Upload 5 fold checkpoints for TCGA-BLCA (from pp_BLCA_20260216_135917)

cohorts/TCGA-BLCA/checkpoints/best_fold_0.pt

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+size 5808682

cohorts/TCGA-BLCA/checkpoints/best_fold_1.pt

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cohorts/TCGA-BLCA/checkpoints/best_fold_2.pt

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cohorts/TCGA-BLCA/checkpoints/best_fold_3.pt

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+size 5808746

cohorts/TCGA-BLCA/checkpoints/best_fold_4.pt

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cohorts/TCGA-BLCA/checkpoints/config.yaml

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+dataset: TCGA-BLCA
+paths:
+  output_dir: C:/Users/Amaya/Documents/PhD/ProtoPathway_results
+  processed_dir: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA
+  code_dir: C:/Users/Amaya/Documents/PhD/ProtoPathway
+input:
+  gene_expression: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA/gene_expression.csv
+  bipartite_graph: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA/bipartite_graph.pt
+  wsi_features_dir: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA/wsi_features_per_patient
+  labels: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA/labels.csv
+  splits: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/processed/TCGA-BLCA/data_splits.pkl
+output:
+  experiments_dir: C:/Users/Amaya/Documents/PhD/ProtoPathway_results/experiments/TCGA-BLCA
+task: survival
+survival:
+  num_bins: 4
+  time_col: survival_time
+  event_col: censorship
+classification:
+  num_classes: 2
+patient_id_col: case_id
+model:
+  name: protopath
+  wsi_input_dim: 1536
+  branches:
+    gene: true
+    wsi: true
+  gene_encoder:
+    hidden_dim: 128
+    hidden_dims:
+    - 128
+    - 128
+    num_layers: 3
+    dropout: 0.5
+    num_heads: 4
+    lr_gene: 0.0001
+  wsi_encoder:
+    hidden_dim: 128
+    num_prototypes: 16
+    tau: 0.1
+    dropout: 0.1
+    num_layers: 2
+    num_heads: 1
+    use_precomputed_centroids: true
+    lr_wsi: 0.0001
+  fusion:
+    type: cross_attention
+    hidden_dim: 128
+    num_heads: 4
+    dropout: 0.5
+  pibd:
+    gamma: 1
+    sigma: 0.1
+    num_patches: 4096
+training:
+  debug_survival: false
+  learning_rate: 1.0e-05
+  weight_decay: 1.0e-05
+  l1_lambda: 0.0
+  batch_size: 1
+  num_workers: 0
+  max_epochs: 100
+  patience: 100
+  scheduler:
+    type: null
+    step_size: 10
+    gamma: 0.5
+    factor: 0.5
+    plateau_patience: 5
+  grad_clip: 0
+  nll_alpha: 0.0
+  monitor_metric: c_index
+  monitor_mode: max
+cv:
+  enabled: true
+experiment:
+  name: null
+  seed: 42
+  deterministic: true
+logging:
+  log_every_n_steps: 10
+  save_predictions: true
+checkpointing:
+  save_best_only: true
+  save_last: true
+visualization:
+  enabled: false
+  save_attention_weights: false
+  save_prototype_assignments: false
+device: cuda