#!/usr/bin/env python3 """ Memory-friendly checkpoint converter: inner -> outer format (v2). Converts the HYV3 checkpoint from inner format (per-expert keys, old naming) to outer format (fused 3D experts, new naming) shard by shard. Handles the case where a single layer's experts may be split across multiple shards (cross-shard experts) by deferring their fusion to a post-processing step. v2 improvements over v1: - Post-processing is shard-centric (each shard read/written only once) instead of prefix-centric (same shard read/written multiple times). This fixes Bus error (core dump) when there are many cross-shard groups. - Explicit memory management with gc.collect() to prevent memory bloat. - Better progress reporting during post-processing. Supports multi-process parallelism for faster conversion. Usage: # Default 8 workers python convert_ckpt_to_outer.py \\ --input_dir pretrain_base/hf \\ --output_dir pretrain_base/hf_outer # Custom worker count python convert_ckpt_to_outer.py \\ --input_dir pretrain_base/hf \\ --output_dir pretrain_base/hf_outer \\ --workers 16 The script will: 1. Pre-scan index.json to detect cross-shard expert groups 2. Convert weights shard-by-shard in parallel (key rename + expert fuse) 3. Post-process cross-shard expert groups (merge from multiple shards) - v2: shard-centric approach, each shard read/written only once 4. Copy config.json as-is (already in outer format) 5. Copy all other files (tokenizer, etc.) 6. Rebuild model.safetensors.index.json """ import argparse import gc import json import os import re import signal import shutil import sys import time import traceback from collections import OrderedDict, defaultdict from multiprocessing import Pool import torch try: from safetensors import safe_open from safetensors.torch import save_file except ImportError: raise ImportError("Please install safetensors: pip install safetensors") # ============================================================================ # Signal handling for Bus error (SIGBUS) and other fatal signals # ============================================================================ def _fatal_signal_handler(signum, frame): """Handle fatal signals (SIGBUS, SIGSEGV) by logging before exit. These signals cannot be caught by try/except. This handler ensures the error message is written to stderr (captured by nohup redirection) before the process terminates. """ sig_name = signal.Signals(signum).name if hasattr(signal, 'Signals') else str(signum) pid = os.getpid() msg = ( f"\n[FATAL] Process {pid} received {sig_name} (signal {signum}).\n" f"This typically indicates an out-of-memory condition during mmap I/O.\n" f"Stack trace at time of signal:\n" ) sys.stderr.write(msg) traceback.print_stack(frame, file=sys.stderr) sys.stderr.flush() # Re-raise with default handler to get proper exit code signal.signal(signum, signal.SIG_DFL) os.kill(pid, signum) def _install_signal_handlers(): """Install handlers for SIGBUS and SIGSEGV in the current process.""" for sig in (signal.SIGBUS, signal.SIGSEGV): try: signal.signal(sig, _fatal_signal_handler) except (OSError, ValueError): # Some signals may not be available on all platforms pass def _pool_worker_init(): """Initializer for multiprocessing pool workers. Installs signal handlers so that Bus errors in worker processes are also logged before the process dies. """ _install_signal_handlers() # ============================================================================ # Key rename mapping (inner -> outer) # ============================================================================ _KEY_RENAMES = [ ("mlp.router.gate.", "mlp.gate."), ("mlp.expert_bias", "mlp.e_score_correction_bias"), ("mlp.shared_mlp.", "mlp.shared_experts."), ] # Regex to match per-expert keys _EXPERT_KEY_RE = re.compile( r"^(.*\.mlp\.experts\.)(\d+)\.(gate_proj|up_proj|down_proj)\.weight$" ) def rename_key(key: str) -> str: """Rename a single key from inner to outer format.""" for old_sub, new_sub in _KEY_RENAMES: if old_sub in key: key = key.replace(old_sub, new_sub) break return key def scan_cross_shard_experts(index_path: str): """Pre-scan index.json to find expert groups that span multiple shards. Returns: cross_shard_prefixes: set of expert prefixes that span multiple shards e.g. {"model.layers.80.mlp.experts."} """ with open(index_path) as f: index = json.load(f) wm = index["weight_map"] # prefix -> set of shards prefix_shards = defaultdict(set) for key in wm: m = _EXPERT_KEY_RE.match(key) if m: prefix = m.group(1) prefix_shards[prefix].add(wm[key]) cross_shard_prefixes = set() for prefix, shards in prefix_shards.items(): if len(shards) > 1: cross_shard_prefixes.add(prefix) return cross_shard_prefixes def convert_shard(shard_path: str, cross_shard_prefixes: set = None): """Load a single shard, rename keys, and fuse experts. For expert groups in cross_shard_prefixes, the per-expert keys are kept as-is (just renamed) and returned separately as deferred items, to be merged later in a post-processing step. Returns: result: OrderedDict of converted tensors (ready to save) deferred_expert_keys: list of original expert keys that were deferred (these are kept in result with their original per-expert naming but with the outer rename applied, to be post-processed later) """ if cross_shard_prefixes is None: cross_shard_prefixes = set() tensors = OrderedDict() with safe_open(shard_path, framework="pt", device="cpu") as f: for key in f.keys(): tensors[key] = f.get_tensor(key) # Separate expert keys from non-expert keys expert_groups = {} # prefix -> {expert_idx -> {proj_name -> tensor}} deferred_expert_keys = [] # keys that belong to cross-shard experts result = OrderedDict() for key, tensor in tensors.items(): m = _EXPERT_KEY_RE.match(key) if m: prefix = m.group(1) expert_idx = int(m.group(2)) proj_name = m.group(3) if prefix in cross_shard_prefixes: # Defer: keep the key as-is (with rename) for post-processing new_key = rename_key(key) result[new_key] = tensor deferred_expert_keys.append(new_key) else: # Normal: collect for fusion within this shard if prefix not in expert_groups: expert_groups[prefix] = {} if expert_idx not in expert_groups[prefix]: expert_groups[prefix][expert_idx] = {} expert_groups[prefix][expert_idx][proj_name] = tensor else: # Non-expert key: just rename new_key = rename_key(key) result[new_key] = tensor # Fuse expert weights for each non-cross-shard layer prefix for prefix in sorted(expert_groups.keys()): experts = expert_groups[prefix] num_experts = max(experts.keys()) + 1 gate_up_list = [] down_list = [] for i in range(num_experts): if i not in experts: raise ValueError( f"Missing expert {i} in {prefix}. " f"Found: {sorted(experts.keys())}" ) exp = experts[i] gate_up = torch.cat([exp["gate_proj"], exp["up_proj"]], dim=0) gate_up_list.append(gate_up) down_list.append(exp["down_proj"]) fused_gate_up = torch.stack(gate_up_list, dim=0) fused_down = torch.stack(down_list, dim=0) for exp in experts.values(): exp.clear() gate_up_list.clear() down_list.clear() result[f"{prefix}gate_up_proj"] = fused_gate_up result[f"{prefix}down_proj"] = fused_down return result, deferred_expert_keys def _process_one_shard(args_tuple): """Worker function: convert a single shard and save to output dir. Args: args_tuple: (idx, num_shards, shard_file, input_dir, output_dir, cross_shard_prefixes) Returns: (shard_file, key_list, shard_size, elapsed, deferred_keys) """ idx, num_shards, shard_file, input_dir, output_dir, cross_shard_prefixes = args_tuple shard_path = os.path.join(input_dir, shard_file) t0 = time.time() converted, deferred_keys = convert_shard(shard_path, cross_shard_prefixes) shard_size = sum(t.numel() * t.element_size() for t in converted.values()) out_shard_path = os.path.join(output_dir, shard_file) save_file(converted, out_shard_path) elapsed = time.time() - t0 num_keys = len(converted) key_list = list(converted.keys()) del converted deferred_info = "" if deferred_keys: deferred_info = f", Deferred={len(deferred_keys)}" print( f" [{idx + 1}/{num_shards}] {shard_file}: " f"Keys={num_keys}, Size={shard_size / 1e9:.2f} GB, " f"Time={elapsed:.1f}s{deferred_info}", flush=True, ) return shard_file, key_list, shard_size, elapsed, deferred_keys def post_process_cross_shard_experts(output_dir, cross_shard_prefixes, all_deferred): """Merge cross-shard expert groups (v2: shard-centric approach). Instead of iterating per-prefix (which causes the same shard to be loaded/saved multiple times), this v2 approach: 1. Builds a mapping of which prefixes each shard is involved in 2. Collects all expert tensors from all involved shards in ONE pass 3. Fuses all prefixes 4. Writes each shard only ONCE with all its updates applied This avoids the Bus error (core dump) caused by repeated mmap of large files and memory bloat. Args: output_dir: path to output directory cross_shard_prefixes: set of expert prefixes that span multiple shards all_deferred: dict of {shard_file: [deferred_key, ...]} Returns: updated_shards: dict of {shard_file: (key_list, shard_size)} for updated shards """ if not cross_shard_prefixes: return {} print(f"\n Post-processing {len(cross_shard_prefixes)} cross-shard expert group(s)...", flush=True) # ---------------------------------------------------------------- # Step 1: Build mappings # ---------------------------------------------------------------- # prefix -> ordered list of shards that contain its experts prefix_to_shards = defaultdict(set) # shard -> set of prefixes it is involved in shard_to_prefixes = defaultdict(set) for shard_file, deferred_keys in all_deferred.items(): for key in deferred_keys: m = _EXPERT_KEY_RE.match(key) if m: prefix = m.group(1) if prefix in cross_shard_prefixes: prefix_to_shards[prefix].add(shard_file) shard_to_prefixes[shard_file].add(prefix) # For each prefix, decide which shard will hold the fused result # (use the first shard alphabetically) prefix_to_target_shard = {} for prefix in sorted(prefix_to_shards.keys()): target = sorted(prefix_to_shards[prefix])[0] prefix_to_target_shard[prefix] = target # All shards that need to be updated all_involved_shards = set() for shards in prefix_to_shards.values(): all_involved_shards.update(shards) print(f" Involved shards: {len(all_involved_shards)}", flush=True) print(f" Expert groups: {len(prefix_to_shards)}", flush=True) # ---------------------------------------------------------------- # Step 2: Collect all expert tensors from all involved shards # (one pass per shard) # ---------------------------------------------------------------- # prefix -> {expert_idx -> {proj_name -> tensor}} all_expert_data = defaultdict(dict) # shard -> OrderedDict of non-expert keys (to be re-saved) shard_non_expert = {} sorted_involved = sorted(all_involved_shards) for si, shard_file in enumerate(sorted_involved): shard_path = os.path.join(output_dir, shard_file) prefixes_in_shard = shard_to_prefixes[shard_file] print(f" [{si+1}/{len(sorted_involved)}] Reading {shard_file} " f"({len(prefixes_in_shard)} prefix(es))...", flush=True) non_expert = OrderedDict() with safe_open(shard_path, framework="pt", device="cpu") as f: for key in f.keys(): m = _EXPERT_KEY_RE.match(key) if m and m.group(1) in prefixes_in_shard: # This is a deferred expert key prefix = m.group(1) expert_idx = int(m.group(2)) proj_name = m.group(3) if expert_idx not in all_expert_data[prefix]: all_expert_data[prefix][expert_idx] = {} all_expert_data[prefix][expert_idx][proj_name] = f.get_tensor(key) else: # Non-expert key: keep as-is non_expert[key] = f.get_tensor(key) shard_non_expert[shard_file] = non_expert gc.collect() # ---------------------------------------------------------------- # Step 3: Fuse all expert groups # ---------------------------------------------------------------- # prefix -> {"gate_up_proj": tensor, "down_proj": tensor} fused_results = {} for pi, prefix in enumerate(sorted(all_expert_data.keys())): expert_data = all_expert_data[prefix] num_experts = max(expert_data.keys()) + 1 print(f" Fusing {prefix} ({num_experts} experts)...", flush=True) gate_up_list = [] down_list = [] for i in range(num_experts): if i not in expert_data: raise ValueError( f"Missing expert {i} in {prefix} after cross-shard merge. " f"Found: {sorted(expert_data.keys())}" ) exp = expert_data[i] if "gate_proj" not in exp or "up_proj" not in exp: raise ValueError( f"Expert {i} in {prefix} missing gate_proj/up_proj. " f"Has: {sorted(exp.keys())}" ) if "down_proj" not in exp: raise ValueError( f"Expert {i} in {prefix} missing down_proj. " f"Has: {sorted(exp.keys())}" ) gate_up = torch.cat([exp["gate_proj"], exp["up_proj"]], dim=0) gate_up_list.append(gate_up) down_list.append(exp["down_proj"]) fused_gate_up = torch.stack(gate_up_list, dim=0) fused_down = torch.stack(down_list, dim=0) fused_results[prefix] = { "gate_up_proj": fused_gate_up, "down_proj": fused_down, } # Free per-expert data for this prefix del gate_up_list, down_list for exp in expert_data.values(): exp.clear() del all_expert_data[prefix] gc.collect() del all_expert_data gc.collect() # ---------------------------------------------------------------- # Step 4: Write each involved shard ONCE with all updates applied # ---------------------------------------------------------------- updated_shards = {} for si, shard_file in enumerate(sorted_involved): shard_path = os.path.join(output_dir, shard_file) non_expert = shard_non_expert[shard_file] # Add fused tensors for prefixes that target this shard fused_added = [] for prefix, target_shard in prefix_to_target_shard.items(): if target_shard == shard_file and prefix in fused_results: non_expert[f"{prefix}gate_up_proj"] = fused_results[prefix]["gate_up_proj"] non_expert[f"{prefix}down_proj"] = fused_results[prefix]["down_proj"] fused_added.append(prefix) save_file(non_expert, shard_path) shard_size = sum(t.numel() * t.element_size() for t in non_expert.values()) updated_shards[shard_file] = (list(non_expert.keys()), shard_size) fused_info = "" if fused_added: fused_info = f", Fused {len(fused_added)} group(s)" print(f" [{si+1}/{len(sorted_involved)}] Wrote {shard_file}: " f"{len(non_expert)} keys, {shard_size / 1e9:.2f} GB{fused_info}", flush=True) # Free memory for this shard del shard_non_expert[shard_file] for prefix in fused_added: del fused_results[prefix] del non_expert gc.collect() return updated_shards def main(): parser = argparse.ArgumentParser( description="Convert HYV3 checkpoint from inner to outer format (v2, shard-centric post-processing)." ) parser.add_argument( "--input_dir", type=str, required=True, help="Path to the inner-format checkpoint directory.", ) parser.add_argument( "--output_dir", type=str, required=True, help="Path to the output outer-format checkpoint directory.", ) parser.add_argument( "--workers", type=int, default=8, help="Number of parallel worker processes (default: 8).", ) args = parser.parse_args() input_dir = os.path.abspath(args.input_dir) output_dir = os.path.abspath(args.output_dir) num_workers = args.workers if not os.path.isdir(input_dir): raise FileNotFoundError(f"Input directory not found: {input_dir}") os.makedirs(output_dir, exist_ok=True) # Pre-scan for cross-shard expert groups index_path = os.path.join(input_dir, "model.safetensors.index.json") cross_shard_prefixes = set() if os.path.exists(index_path): cross_shard_prefixes = scan_cross_shard_experts(index_path) if cross_shard_prefixes: print(f"Detected {len(cross_shard_prefixes)} cross-shard expert group(s):") for p in sorted(cross_shard_prefixes): print(f" - {p}") print() # Get all safetensors files shard_files = sorted( f for f in os.listdir(input_dir) if f.endswith(".safetensors") ) if not shard_files: raise FileNotFoundError(f"No .safetensors files found in {input_dir}") # Skip already-converted shards (for resumability) # NOTE: if there are cross-shard experts, we cannot skip shards that # contain deferred keys (they need post-processing). For simplicity, # when cross-shard experts exist, we re-process all shards. remaining = [] skipped = [] if cross_shard_prefixes: # Re-process all shards when cross-shard experts exist remaining = list(shard_files) else: for sf in shard_files: out_path = os.path.join(output_dir, sf) if os.path.exists(out_path) and os.path.getsize(out_path) > 0: skipped.append(sf) else: remaining.append(sf) num_shards = len(shard_files) num_workers = min(num_workers, len(remaining)) if remaining else 1 print(f"=" * 60) print(f"HYV3 Checkpoint Converter (inner -> outer, v2)") print(f" Input : {input_dir}") print(f" Output : {output_dir}") print(f" Shards : {num_shards} total, {len(skipped)} already done, {len(remaining)} to process") print(f" Workers: {num_workers}") if cross_shard_prefixes: print(f" Cross-shard experts: {len(cross_shard_prefixes)} group(s) (will post-process)") print(f"=" * 60) t_start = time.time() # Build task list for remaining shards tasks = [ (i, len(remaining), sf, input_dir, output_dir, cross_shard_prefixes) for i, sf in enumerate(remaining) ] # Process in parallel results = [] if tasks: with Pool(processes=num_workers, initializer=_pool_worker_init) as pool: results = pool.map(_process_one_shard, tasks) # Collect deferred keys info all_deferred = {} # shard_file -> [deferred_keys] for shard_file, key_list, shard_size, elapsed, deferred_keys in results: if deferred_keys: all_deferred[shard_file] = deferred_keys # Post-process cross-shard expert groups (v2: shard-centric) updated_shards = {} if cross_shard_prefixes and all_deferred: updated_shards = post_process_cross_shard_experts( output_dir, cross_shard_prefixes, all_deferred ) # Build weight_map and total_size weight_map = OrderedDict() total_size = 0 # For skipped shards, read their keys from the output files for sf in skipped: out_path = os.path.join(output_dir, sf) with safe_open(out_path, framework="pt", device="cpu") as f: keys = list(f.keys()) for key in keys: weight_map[key] = sf t = f.get_tensor(key) total_size += t.numel() * t.element_size() # Collect results from newly converted shards for shard_file, key_list, shard_size, elapsed, deferred_keys in results: if shard_file in updated_shards: # This shard was updated by post-processing updated_key_list, updated_size = updated_shards[shard_file] for key in updated_key_list: weight_map[key] = shard_file total_size += updated_size else: for key in key_list: weight_map[key] = shard_file total_size += shard_size # Build and save index sorted_weight_map = OrderedDict(sorted(weight_map.items())) index = { "metadata": {"total_size": total_size}, "weight_map": sorted_weight_map, } index_path_out = os.path.join(output_dir, "model.safetensors.index.json") with open(index_path_out, "w") as f: json.dump(index, f, indent=2) f.write("\n") print(f"\nSaved {index_path_out}") # Copy non-safetensors files (config, tokenizer, etc.) skip_suffixes = {".safetensors"} skip_names = {"model.safetensors.index.json"} copied = [] for fname in os.listdir(input_dir): if fname in skip_names: continue if any(fname.endswith(s) for s in skip_suffixes): continue src = os.path.join(input_dir, fname) dst = os.path.join(output_dir, fname) if os.path.isfile(src): shutil.copy2(src, dst) copied.append(fname) elif os.path.isdir(src): if os.path.exists(dst): shutil.rmtree(dst) shutil.copytree(src, dst) copied.append(fname + "/") if copied: print(f"\nCopied files: {', '.join(copied)}") t_total = time.time() - t_start print(f"\n{'=' * 60}") print(f"Conversion complete!") print(f" Total keys : {len(weight_map)}") print(f" Total size : {total_size / 1e9:.2f} GB") print(f" Total time : {t_total:.1f}s ({t_total / 60:.1f} min)") print(f" Output dir : {output_dir}") print(f"{'=' * 60}") if __name__ == "__main__": _install_signal_handlers() main()