OpenWormLLM / models /GenericMuscleCell.cell.nml
pgleeson's picture
Initial nml model run
cdb94e2
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd" id="GenericCell">
<notes>
...
</notes>
<include href="cell_C.xml"/>
<fixedFactorConcentrationModel id="CaPool" ion="ca" restingConc="0 mM" decayConstant="20 ms" rho="0.0002 mol_per_m_per_A_per_s"/>
<cell id="GenericMuscleCell">
<morphology id="morphology_GenericMuscleCell">
<segment id="0" name="soma">
<proximal x="0.000000e+00" y="0.000000e+00" z="0.000000e+00" diameter="5.0"/>
<distal x="0.000000e+00" y="2.000000e+01" z="0.000000e+00" diameter="5.0"/>
</segment>
</morphology>
<biophysicalProperties id="biophys_GenericMuscleCell">
<membraneProperties>
<channelDensity id="Leak_all" ionChannel="Leak" condDensity="0.00105 mS_per_cm2" erev="-44 mV" ion="non_specific"/>
<channelDensity id="k_slow_all" ionChannel="k_slow" condDensity="0.3 mS_per_cm2" erev="-80 mV" ion="k"/>
<channelDensity id="ca_simple_all" ionChannel="ca_simple" condDensity="0.25 mS_per_cm2" erev="50 mV" ion="ca"/>
<spikeThresh value="-20 mV"/>
<specificCapacitance value=".6860 uF_per_cm2"/>
<initMembPotential value="-50 mV"/>
</membraneProperties>
<intracellularProperties>
<species id="ca" concentrationModel="CaPool" ion="ca" initialConcentration="0 mM" initialExtConcentration="2E-6 mol_per_cm3"/>
<resistivity value="0.1 kohm_cm"/>
</intracellularProperties>
</biophysicalProperties>
</cell>
</neuroml>