# Requires Python 3.10–3.12 (rdkit / numpy / pandas / pyarrow / scipy / scikit-learn / statsmodels pins ship cp310–cp312 wheels only).
# See AGENTS.md §3 for the full coding-standards contract.

# --- Web / API layer ---
fastapi==0.115.0
uvicorn[standard]==0.30.6
pydantic==2.9.2

# --- Core data stack ---
numpy==1.26.4
pandas==2.2.2
pyarrow==17.0.0
scipy==1.13.1
scikit-learn==1.5.1

# --- Modality: tabular / molecules (BBB pipeline) ---
rdkit==2024.3.5

# --- Modality: signal (EEG pipeline) ---
mne==1.7.1

# --- Modality: image (MRI pipeline) ---
nibabel==5.2.1
neuroharmonize==2.4.5  # ComBat harmonization wrapper
neuroCombat==0.2.12  # transitive dep of neuroharmonize; pinned for reproducibility
statsmodels==0.14.6  # transitive dep of neuroharmonize; pinned for reproducibility

# --- Experiment tracking ---
mlflow==2.16.0

# --- Downstream ML / XAI (Day 5 decision layer) ---
shap==0.46.0
joblib==1.4.2
onnxruntime==1.19.2  # MRI volumetric ONNX inference (external DL artifact)
torch==2.4.1                  # MRI 2D resnet18 inference (Plan: external-assets-integration)
torchvision==0.19.1           # resnet18 + image transforms
pillow==10.4.0                # image loading for 2D MRI inputs

# --- Tooling / tests ---
pytest==8.3.3
pytest-cov==5.0.0
httpx==0.27.2  # FastAPI test client

# --- RAG (knowledge retrieval for agent feedback loop) ---
fastembed==0.4.2          # ONNX-based embeddings, no torch dep
faiss-cpu==1.8.0          # vector store
pypdf==5.0.1              # PDF text extraction

# --- Frontend (B2B dashboard) ---
streamlit==1.39.0

# --- LLM provider (Day 7 explainer) ---
openai==1.51.0  # OpenRouter SDK (Day-7 LLM explainer; deterministic-template fallback always available)
python-dotenv==1.0.1  # Load OPENROUTER_API_KEY from local .env for API/agent demos