| #!/bin/sh |
| set -eu |
|
|
| mkdir -p data/raw data/processed data/knowledge_base/seed |
|
|
| if [ -f tests/fixtures/bbbp_sample.csv ] && [ ! -f data/raw/bbbp.csv ]; then |
| cp tests/fixtures/bbbp_sample.csv data/raw/bbbp.csv |
| fi |
|
|
| if [ -f tests/fixtures/eeg_sample.fif ] && [ ! -f data/raw/eeg.fif ]; then |
| cp tests/fixtures/eeg_sample.fif data/raw/eeg.fif |
| fi |
|
|
| if [ -d tests/fixtures/kb_sample ] && [ ! -f data/knowledge_base/seed/lipinski_rule_of_five.md ]; then |
| cp tests/fixtures/kb_sample/* data/knowledge_base/seed/ |
| fi |
|
|
| if [ ! -f data/processed/bbbp_features.parquet ]; then |
| NEUROBRIDGE_DISABLE_MLFLOW=1 python -m src.pipelines.bbb_pipeline |
| fi |
|
|
| if [ ! -f data/processed/bbb_model.joblib ]; then |
| python -m src.models.bbb_model |
| fi |
|
|
| if [ ! -f data/processed/faiss_index/index.bin ]; then |
| python -m src.rag.ingest data/knowledge_base data/processed/faiss_index |
| fi |
|
|
| exec "$@" |
|
|
