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ba54ea9 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | #!/usr/bin/env bash
# Generate a Synthea synthetic patient FHIR bundle for a showcase case.
#
# Usage:
# ./scripts/generate_synthea_case.sh <case_name> [seed]
#
# Examples:
# ./scripts/generate_synthea_case.sh sarah 3923
# ./scripts/generate_synthea_case.sh marcus 7711
#
# Requires: java 11+, internet access for the first run.
set -euo pipefail
CASE_NAME="${1:?Usage: $0 <case_name> [seed]}"
SEED="${2:-3923}"
REPO_ROOT="$(cd "$(dirname "$0")/.." && pwd)"
OUT_DIR="${REPO_ROOT}/data/cases/${CASE_NAME}"
WORK_DIR="${OUT_DIR}/synthea-output"
JAR_URL="https://github.com/synthetichealth/synthea/releases/download/v3.3.0/synthea-with-dependencies.jar"
mkdir -p "${WORK_DIR}"
cd "${WORK_DIR}"
if [ ! -f synthea-with-dependencies.jar ]; then
echo "Downloading Synthea jar..."
curl -fL -o synthea-with-dependencies.jar "${JAR_URL}"
fi
echo "Generating patient with seed ${SEED}..."
java -jar synthea-with-dependencies.jar \
-p 1 -s "${SEED}" \
--exporter.fhir.export=true \
--exporter.csv.export=false \
--generate.only_alive_patients=true \
--exporter.years_of_history=10 \
Massachusetts \
-a 60-75 -g F
# The first FHIR bundle file is the patient bundle (others are hospital/practitioner).
PATIENT_BUNDLE="$(ls output/fhir/*.json | grep -v 'hospitalInformation\|practitionerInformation' | head -1)"
if [ -z "${PATIENT_BUNDLE}" ]; then
echo "ERROR: no patient bundle produced. Check Synthea output above." >&2
exit 1
fi
cp "${PATIENT_BUNDLE}" "${OUT_DIR}/fhir.json"
echo "Wrote ${OUT_DIR}/fhir.json"
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