fix: SSL patch for PubMed, install deps, extract-table working

app.py

@@ -269,6 +269,8 @@ def extract_table():
         table = run_table_extractor(question, synthesis, papers)
         return jsonify({"table": table})
     except Exception as e:
+        import traceback
+        traceback.print_exc()
         return jsonify({"error": str(e)}), 500
 
 if __name__ == "__main__":

retrieval/pubmed.py

@@ -1,7 +1,8 @@
 import re
+import ssl
 from Bio import Entrez
-
 Entrez.email = "azlaanmohammad66@gmail.com"
+ssl._create_default_https_context = ssl._create_unverified_context
 
 
 def parse_abstract_block(pmid, block):