guohanghui commited on
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5a7242d
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1 Parent(s): cc7c680

Update Dockerfile

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  1. Dockerfile +4 -0
Dockerfile CHANGED
@@ -1,5 +1,9 @@
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  FROM python:3.10
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  RUN useradd -m -u 1000 user && python -m pip install --upgrade pip
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  USER user
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  ENV PATH="/home/user/.local/bin:$PATH"
 
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  FROM python:3.10
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+ # Install bedtools system dependency (required by pybedtools)
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+ USER root
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+ RUN apt-get update && apt-get install -y bedtools && rm -rf /var/lib/apt/lists/*
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+
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  RUN useradd -m -u 1000 user && python -m pip install --upgrade pip
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  USER user
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  ENV PATH="/home/user/.local/bin:$PATH"