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Dev Nagaich commited on
Commit ยท
8794644
1
Parent(s): e0ee47c
Fix Error 403 in new config
Browse files- .streamlit/config.toml +10 -0
- Dockerfile +11 -7
- app.py +121 -141
- requirements_deploy.txt +15 -27
.streamlit/config.toml
ADDED
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@@ -0,0 +1,10 @@
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[server]
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maxUploadSize = 500
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headless = true
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port = 7860
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address = "0.0.0.0"
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[browser]
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gatherUsageStats = false
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serverAddress = "0.0.0.0"
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serverPort = 7860
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Dockerfile
CHANGED
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@@ -17,7 +17,7 @@ RUN apt-get update && apt-get install -y \
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# Copy requirements first for better caching
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COPY requirements_deploy.txt .
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# Install Python dependencies
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RUN pip install --no-cache-dir --upgrade pip && \
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pip install --no-cache-dir -r requirements_deploy.txt
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@@ -35,7 +35,7 @@ RUN wget --no-check-certificate \
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https://dl.fbaipublicfiles.com/segment_anything_2/072824/sam2_hiera_small.pt \
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-O segment-anything-2/checkpoints/sam2_hiera_small.pt
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# Download VREyeSAM
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RUN pip install --no-cache-dir huggingface-hub && \
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python -c "from huggingface_hub import hf_hub_download; \
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hf_hub_download(repo_id='devnagaich/VREyeSAM', \
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@@ -44,10 +44,13 @@ RUN pip install --no-cache-dir huggingface-hub && \
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local_dir_use_symlinks=False)"
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# Verify files were downloaded
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RUN ls -lh segment-anything-2/checkpoints/
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# Copy application files
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COPY app.py .
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@@ -60,9 +63,10 @@ ENV STREAMLIT_SERVER_PORT=7860
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ENV STREAMLIT_SERVER_ADDRESS=0.0.0.0
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ENV STREAMLIT_SERVER_HEADLESS=true
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ENV STREAMLIT_BROWSER_GATHER_USAGE_STATS=false
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# Health check
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HEALTHCHECK CMD curl --fail http://localhost:7860/_stcore/health || exit 1
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# Run the application
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CMD ["streamlit", "run", "app.py", "--server.port=7860", "--server.address=0.0.0.0"]
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# Copy requirements first for better caching
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COPY requirements_deploy.txt .
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# Install Python dependencies
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RUN pip install --no-cache-dir --upgrade pip && \
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pip install --no-cache-dir -r requirements_deploy.txt
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https://dl.fbaipublicfiles.com/segment_anything_2/072824/sam2_hiera_small.pt \
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-O segment-anything-2/checkpoints/sam2_hiera_small.pt
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# Download VREyeSAM weights using Python
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RUN pip install --no-cache-dir huggingface-hub && \
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python -c "from huggingface_hub import hf_hub_download; \
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hf_hub_download(repo_id='devnagaich/VREyeSAM', \
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local_dir_use_symlinks=False)"
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# Verify files were downloaded
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RUN ls -lh segment-anything-2/checkpoints/
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# Create Streamlit config directory
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RUN mkdir -p /root/.streamlit
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# Copy Streamlit config to increase upload size
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COPY .streamlit/config.toml /root/.streamlit/config.toml
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# Copy application files
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COPY app.py .
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ENV STREAMLIT_SERVER_ADDRESS=0.0.0.0
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ENV STREAMLIT_SERVER_HEADLESS=true
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ENV STREAMLIT_BROWSER_GATHER_USAGE_STATS=false
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ENV STREAMLIT_SERVER_MAX_UPLOAD_SIZE=500
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# Health check
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HEALTHCHECK CMD curl --fail http://localhost:7860/_stcore/health || exit 1
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# Run the application
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CMD ["streamlit", "run", "app.py", "--server.port=7860", "--server.address=0.0.0.0", "--server.maxUploadSize=500"]
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app.py
CHANGED
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@@ -6,7 +6,6 @@ from PIL import Image
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import io
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import sys
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import os
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import traceback
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# Add segment-anything-2 to path
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), "segment-anything-2"))
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@@ -18,7 +17,8 @@ from sam2.sam2_image_predictor import SAM2ImagePredictor
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st.set_page_config(
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page_title="VREyeSAM - Non-frontal Iris Segmentation",
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page_icon="๐๏ธ",
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layout="wide"
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)
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# Custom CSS
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def load_model():
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"""Load the VREyeSAM model"""
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try:
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#
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model_cfg = "configs/sam2/sam2_hiera_s.yaml"
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sam2_checkpoint = "segment-anything-2/checkpoints/sam2_hiera_small.pt"
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fine_tuned_weights = "segment-anything-2/checkpoints/VREyeSAM_uncertainity_best.torch"
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# Verify files exist
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if not os.path.exists(sam2_checkpoint):
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st.error(f"โ SAM2 checkpoint not found at: {sam2_checkpoint}")
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st.info("Current directory: " + os.getcwd())
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st.info("Directory contents: " + str(os.listdir(".")))
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return None
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if not os.path.exists(fine_tuned_weights):
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st.error(f"โ VREyeSAM weights not found at: {fine_tuned_weights}")
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return None
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# Check file sizes
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sam2_size = os.path.getsize(sam2_checkpoint) / (1024 * 1024)
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vresam_size = os.path.getsize(fine_tuned_weights) / (1024 * 1024)
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st.info(f"๐ฆ SAM2 checkpoint: {sam2_size:.1f} MB")
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st.info(f"๐ฆ VREyeSAM weights: {vresam_size:.1f} MB")
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# Load model
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device = "cuda" if torch.cuda.is_available() else "cpu"
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st.info(f"๐ฅ๏ธ Loading model on: {device.upper()}")
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sam2_model = build_sam2(model_cfg, sam2_checkpoint, device=device)
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predictor = SAM2ImagePredictor(sam2_model)
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return predictor
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except Exception as e:
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st.error(f"
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st.error("Full traceback:")
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st.code(traceback.format_exc())
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return None
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def read_and_resize_image(image):
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- Inconsistent lighting conditions
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**Model Performance:**
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- Precision: 0.751
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- Recall: 0.870
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- F1-Score: 0.806
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- Mean IoU: 0.647
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""")
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st.header("Settings")
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st.success("โ
Model loaded successfully!")
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# File uploader
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uploaded_file = st.file_uploader(
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"Upload an iris image (JPG, PNG, JPEG)",
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type=["jpg", "png", "jpeg"],
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@@ -222,132 +200,134 @@ def main():
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)
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if uploaded_file is not None:
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binary_pil.save(buf, format="PNG")
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st.download_button(
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label="Download Binary Mask",
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data=buf.getvalue(),
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file_name="binary_mask.png",
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mime="image/png"
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)
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with download_cols[1]:
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if show_overlay:
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# Overlay download
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overlay_pil = Image.fromarray(cv2.cvtColor(overlay, cv2.COLOR_BGR2RGB))
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buf = io.BytesIO()
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st.download_button(
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label="Download
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data=buf.getvalue(),
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file_name="
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mime="image/png"
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)
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st.download_button(
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label="Download Iris Strip",
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data=buf.getvalue(),
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file_name="iris_strip.png",
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mime="image/png"
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)
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# Statistics
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st.markdown("---")
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st.subheader("๐ Segmentation Statistics")
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stats_cols = st.columns(4)
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mask_area = np.sum(binary_mask > 0)
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total_area = binary_mask.shape[0] * binary_mask.shape[1]
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coverage = (mask_area / total_area) * 100
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with stats_cols[0]:
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st.metric("Mask Coverage", f"{coverage:.2f}%")
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with stats_cols[1]:
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st.metric("Image Size", f"{img_array.shape[1]}x{img_array.shape[0]}")
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with stats_cols[2]:
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st.metric("Mask Area (pixels)", f"{mask_area:,}")
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with stats_cols[3]:
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if iris_strip is not None:
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st.metric("Strip Size", f"{iris_strip.shape[1]}x{iris_strip.shape[0]}")
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except Exception as e:
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st.error(f"โ Error during segmentation: {str(e)}")
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st.error("Full traceback:")
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st.code(traceback.format_exc())
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# Footer
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st.markdown("---")
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st.markdown("""
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<div style='text-align: center'>
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<p><strong>VREyeSAM</strong> - Virtual Reality Non-Frontal Iris Segmentation</p>
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-
<p>Sharma et al., IJCB 2025</p>
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<p>๐ <a href='https://github.com/GeetanjaliGTZ/VREyeSAM'>GitHub</a> |
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๐ง <a href='mailto:geetanjalisharma546@gmail.com'>Contact</a></p>
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</div>
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import io
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import sys
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import os
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# Add segment-anything-2 to path
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), "segment-anything-2"))
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st.set_page_config(
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page_title="VREyeSAM - Non-frontal Iris Segmentation",
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page_icon="๐๏ธ",
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layout="wide",
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initial_sidebar_state="expanded"
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)
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# Custom CSS
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def load_model():
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"""Load the VREyeSAM model"""
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try:
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# Correct paths as specified
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model_cfg = "configs/sam2/sam2_hiera_s.yaml"
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sam2_checkpoint = "segment-anything-2/checkpoints/sam2_hiera_small.pt"
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fine_tuned_weights = "segment-anything-2/checkpoints/VREyeSAM_uncertainity_best.torch"
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# Load model
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device = "cuda" if torch.cuda.is_available() else "cpu"
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sam2_model = build_sam2(model_cfg, sam2_checkpoint, device=device)
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predictor = SAM2ImagePredictor(sam2_model)
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return predictor
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except Exception as e:
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st.error(f"Error loading model: {str(e)}")
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return None
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def read_and_resize_image(image):
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- Inconsistent lighting conditions
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**Model Performance:**
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- Recall: 0.870
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- F1-Score: 0.806
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""")
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st.header("Settings")
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st.success("โ
Model loaded successfully!")
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# File uploader with increased size limit
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uploaded_file = st.file_uploader(
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"Upload an iris image (JPG, PNG, JPEG)",
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type=["jpg", "png", "jpeg"],
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)
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if uploaded_file is not None:
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try:
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# Display original image
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image = Image.open(uploaded_file)
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col1, col2 = st.columns(2)
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with col1:
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st.subheader("๐ท Original Image")
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st.image(image, use_container_width=True)
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# Process button
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if st.button("๐ Segment Iris", type="primary"):
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with st.spinner("Segmenting iris..."):
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try:
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# Prepare image
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img_array = read_and_resize_image(image)
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# Perform segmentation
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binary_mask, prob_mask = segment_iris(predictor, img_array)
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# Extract iris strip
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iris_strip = extract_iris_strip(img_array, binary_mask) if show_iris_strip else None
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with col2:
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st.subheader("๐ฏ Binary Mask")
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binary_mask_img = (binary_mask * 255).astype(np.uint8)
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st.image(binary_mask_img, use_container_width=True)
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# Additional results
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st.markdown("---")
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st.subheader("๐ Segmentation Results")
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result_cols = st.columns(3)
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with result_cols[0]:
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if show_overlay:
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st.markdown("**Overlay View**")
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overlay = overlay_mask_on_image(img_array, binary_mask)
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st.image(overlay, use_container_width=True)
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with result_cols[1]:
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if show_probabilistic:
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| 245 |
+
st.markdown("**Probabilistic Mask**")
|
| 246 |
+
prob_mask_img = (prob_mask * 255).astype(np.uint8)
|
| 247 |
+
st.image(prob_mask_img, use_container_width=True)
|
| 248 |
+
|
| 249 |
+
with result_cols[2]:
|
| 250 |
+
if show_iris_strip and iris_strip is not None:
|
| 251 |
+
st.markdown("**Extracted Iris Strip**")
|
| 252 |
+
st.image(iris_strip, use_container_width=True)
|
| 253 |
+
elif show_iris_strip:
|
| 254 |
+
st.warning("No iris region detected")
|
| 255 |
+
|
| 256 |
+
# Download options
|
| 257 |
+
st.markdown("---")
|
| 258 |
+
st.subheader("๐พ Download Results")
|
| 259 |
+
|
| 260 |
+
download_cols = st.columns(3)
|
| 261 |
+
|
| 262 |
+
with download_cols[0]:
|
| 263 |
+
# Binary mask download
|
| 264 |
+
binary_pil = Image.fromarray(binary_mask_img)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 265 |
buf = io.BytesIO()
|
| 266 |
+
binary_pil.save(buf, format="PNG")
|
| 267 |
st.download_button(
|
| 268 |
+
label="Download Binary Mask",
|
| 269 |
data=buf.getvalue(),
|
| 270 |
+
file_name="binary_mask.png",
|
| 271 |
mime="image/png"
|
| 272 |
)
|
| 273 |
+
|
| 274 |
+
with download_cols[1]:
|
| 275 |
+
if show_overlay:
|
| 276 |
+
# Overlay download
|
| 277 |
+
overlay_pil = Image.fromarray(cv2.cvtColor(overlay, cv2.COLOR_BGR2RGB))
|
| 278 |
+
buf = io.BytesIO()
|
| 279 |
+
overlay_pil.save(buf, format="PNG")
|
| 280 |
+
st.download_button(
|
| 281 |
+
label="Download Overlay",
|
| 282 |
+
data=buf.getvalue(),
|
| 283 |
+
file_name="overlay.png",
|
| 284 |
+
mime="image/png"
|
| 285 |
+
)
|
| 286 |
+
|
| 287 |
+
with download_cols[2]:
|
| 288 |
+
if iris_strip is not None:
|
| 289 |
+
# Iris strip download
|
| 290 |
+
strip_pil = Image.fromarray(cv2.cvtColor(iris_strip, cv2.COLOR_BGR2RGB))
|
| 291 |
+
buf = io.BytesIO()
|
| 292 |
+
strip_pil.save(buf, format="PNG")
|
| 293 |
+
st.download_button(
|
| 294 |
+
label="Download Iris Strip",
|
| 295 |
+
data=buf.getvalue(),
|
| 296 |
+
file_name="iris_strip.png",
|
| 297 |
+
mime="image/png"
|
| 298 |
+
)
|
| 299 |
+
|
| 300 |
+
# Statistics
|
| 301 |
+
st.markdown("---")
|
| 302 |
+
st.subheader("๐ Segmentation Statistics")
|
| 303 |
+
stats_cols = st.columns(4)
|
| 304 |
+
|
| 305 |
+
mask_area = np.sum(binary_mask > 0)
|
| 306 |
+
total_area = binary_mask.shape[0] * binary_mask.shape[1]
|
| 307 |
+
coverage = (mask_area / total_area) * 100
|
| 308 |
+
|
| 309 |
+
with stats_cols[0]:
|
| 310 |
+
st.metric("Mask Coverage", f"{coverage:.2f}%")
|
| 311 |
+
with stats_cols[1]:
|
| 312 |
+
st.metric("Image Size", f"{img_array.shape[1]}x{img_array.shape[0]}")
|
| 313 |
+
with stats_cols[2]:
|
| 314 |
+
st.metric("Mask Area (pixels)", f"{mask_area:,}")
|
| 315 |
+
with stats_cols[3]:
|
| 316 |
+
if iris_strip is not None:
|
| 317 |
+
st.metric("Strip Size", f"{iris_strip.shape[1]}x{iris_strip.shape[0]}")
|
| 318 |
|
| 319 |
+
except Exception as e:
|
| 320 |
+
st.error(f"โ Error during segmentation: {str(e)}")
|
| 321 |
+
|
| 322 |
+
except Exception as e:
|
| 323 |
+
st.error(f"โ Error loading image: {str(e)}")
|
| 324 |
+
st.info("Please try uploading a different image or reducing the file size.")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 325 |
|
| 326 |
# Footer
|
| 327 |
st.markdown("---")
|
| 328 |
st.markdown("""
|
| 329 |
<div style='text-align: center'>
|
| 330 |
<p><strong>VREyeSAM</strong> - Virtual Reality Non-Frontal Iris Segmentation</p>
|
|
|
|
| 331 |
<p>๐ <a href='https://github.com/GeetanjaliGTZ/VREyeSAM'>GitHub</a> |
|
| 332 |
๐ง <a href='mailto:geetanjalisharma546@gmail.com'>Contact</a></p>
|
| 333 |
</div>
|
requirements_deploy.txt
CHANGED
|
@@ -1,39 +1,27 @@
|
|
| 1 |
-
#
|
| 2 |
-
|
| 3 |
-
# This version resolves NumPy conflicts with gensim and numba
|
| 4 |
|
| 5 |
-
#
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
# Core ML and Deep Learning - COMPATIBLE VERSIONS
|
| 9 |
-
torch==2.3.0
|
| 10 |
-
torchvision==0.18.0
|
| 11 |
numpy>=1.22.0,<2.0.0
|
| 12 |
|
| 13 |
# Computer Vision
|
| 14 |
-
opencv-python-headless>=4.5.0
|
| 15 |
-
Pillow>=8.0.0
|
| 16 |
|
| 17 |
-
# Data Processing
|
| 18 |
-
pandas>=1.3.0
|
| 19 |
-
scikit-learn>=1.0.0
|
| 20 |
|
| 21 |
# Visualization
|
| 22 |
-
matplotlib>=3.5.0
|
| 23 |
|
| 24 |
# Utility
|
| 25 |
-
tqdm>=4.62.0
|
| 26 |
-
hydra-core>=1.1.0
|
| 27 |
-
omegaconf>=2.1.0,<3.0.0
|
| 28 |
|
| 29 |
# For downloading model weights
|
| 30 |
-
huggingface-hub>=0.19.0
|
| 31 |
-
|
| 32 |
-
# Note: Install PyTorch with CUDA support separately if needed:
|
| 33 |
-
# For CUDA 11.8: pip install torch==2.3.0 torchvision==0.18.0 --index-url https://download.pytorch.org/whl/cu118
|
| 34 |
-
# For CUDA 12.1: pip install torch==2.3.0 torchvision==0.18.0 --index-url https://download.pytorch.org/whl/cu121
|
| 35 |
-
# For CPU only: pip install torch==2.3.0 torchvision==0.18.0 --index-url https://download.pytorch.org/whl/cpu
|
| 36 |
|
| 37 |
-
# SAM2 will be installed
|
| 38 |
-
# git clone https://github.com/facebookresearch/segment-anything-2
|
| 39 |
-
# cd segment-anything-2 && pip install -e . && cd ..
|
|
|
|
| 1 |
+
# Streamlit for web interface
|
| 2 |
+
streamlit>=1.28.0
|
|
|
|
| 3 |
|
| 4 |
+
# Core ML and Deep Learning
|
| 5 |
+
torch>=2.0.0,<2.5.0
|
| 6 |
+
torchvision>=0.15.0,<0.20.0
|
|
|
|
|
|
|
|
|
|
| 7 |
numpy>=1.22.0,<2.0.0
|
| 8 |
|
| 9 |
# Computer Vision
|
| 10 |
+
opencv-python-headless>=4.5.0
|
| 11 |
+
Pillow>=8.0.0
|
| 12 |
|
| 13 |
+
# Data Processing
|
| 14 |
+
pandas>=1.3.0
|
| 15 |
+
scikit-learn>=1.0.0
|
| 16 |
|
| 17 |
# Visualization
|
| 18 |
+
matplotlib>=3.5.0
|
| 19 |
|
| 20 |
# Utility
|
| 21 |
+
tqdm>=4.62.0
|
| 22 |
+
hydra-core>=1.1.0
|
|
|
|
| 23 |
|
| 24 |
# For downloading model weights
|
| 25 |
+
huggingface-hub>=0.19.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
|
| 27 |
+
# Note: SAM2 will be installed from git in Dockerfile
|
|
|
|
|
|