Anirudh Balaraman commited on
Commit
b1824d5
·
unverified ·
1 Parent(s): 4f13c99

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +8 -9
README.md CHANGED
@@ -26,15 +26,15 @@ Deep learning methods used in medical AI—particularly for csPCa prediction and
26
 
27
  ## Key Features
28
 
29
- - ⚡**Automatic Attention Heatmaps** - Weak attention heatmaps generated automatically from DWI and ADC sequnces.
30
- - 🧠**Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss, replace the need for voxel-level labels.
31
- - 🧩**3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling.
32
- - 👁️**Two-stage pipeline** — Visualise salient patches highlighting probable tumour regions.
33
- - 🧹**Preprocessing** — Preprocessing to minimize inter-center MRI acquisiton variability.
34
- - 🏥**End-to-end Pipeline** — Open source, clinically viable complete pipeline.
35
 
36
 
37
- ## Quick Start
38
 
39
  ```bash
40
  git clone https://github.com/anirudhbalaraman/WSAttention-Prostate.git
@@ -45,14 +45,13 @@ pytest tests/
45
  ### Model Download
46
 
47
  ```bash
48
- MODELS_DIR="./models"
49
  mkdir -p ./models
50
  curl -L -o models/file1.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/cspca_model.pth
51
  curl -L -o models/file2.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/pirads.pt
52
  curl -L -o models/file3.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/prostate_segmentation_model.pt
53
  ```
54
 
55
- ## Usage
56
 
57
  ### Preprocessing
58
 
 
26
 
27
  ## Key Features
28
 
29
+ - ⚡ **Automatic Attention Heatmaps** - Weak attention heatmaps generated automatically from DWI and ADC sequnces.
30
+ - 🧠 **Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss, replace the need for voxel-level labels.
31
+ - 🧩 **3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling.
32
+ - 👁️ **Two-stage pipeline** — Visualise salient patches highlighting probable tumour regions.
33
+ - 🧹 **Preprocessing** — Preprocessing to minimize inter-center MRI acquisiton variability.
34
+ - 🏥 **End-to-end Pipeline** — Open source, clinically viable complete pipeline.
35
 
36
 
37
+ ## 🚀 Quick Start
38
 
39
  ```bash
40
  git clone https://github.com/anirudhbalaraman/WSAttention-Prostate.git
 
45
  ### Model Download
46
 
47
  ```bash
 
48
  mkdir -p ./models
49
  curl -L -o models/file1.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/cspca_model.pth
50
  curl -L -o models/file2.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/pirads.pt
51
  curl -L -o models/file3.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/prostate_segmentation_model.pt
52
  ```
53
 
54
+ ## 🚀 Usage
55
 
56
  ### Preprocessing
57