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README.md
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@@ -26,15 +26,15 @@ Deep learning methods used in medical AI—particularly for csPCa prediction and
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## Key Features
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- ⚡**Automatic Attention Heatmaps** - Weak attention heatmaps generated automatically from DWI and ADC sequnces.
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- 🧠**Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss, replace the need for voxel-level labels.
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- 🧩**3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling.
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- 👁️**Two-stage pipeline** — Visualise salient patches highlighting probable tumour regions.
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- 🧹**Preprocessing** — Preprocessing to minimize inter-center MRI acquisiton variability.
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- 🏥**End-to-end Pipeline** — Open source, clinically viable complete pipeline.
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## Quick Start
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```bash
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git clone https://github.com/anirudhbalaraman/WSAttention-Prostate.git
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### Model Download
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```bash
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MODELS_DIR="./models"
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mkdir -p ./models
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curl -L -o models/file1.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/cspca_model.pth
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curl -L -o models/file2.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/pirads.pt
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curl -L -o models/file3.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/prostate_segmentation_model.pt
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```
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## Usage
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### Preprocessing
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## Key Features
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+
- ⚡ **Automatic Attention Heatmaps** - Weak attention heatmaps generated automatically from DWI and ADC sequnces.
|
| 30 |
+
- 🧠 **Weakly-Supervised Attention** — Heatmap-guided patch sampling and cosine-similarity attention loss, replace the need for voxel-level labels.
|
| 31 |
+
- 🧩 **3D Multiple Instance Learning** — Extracts volumetric patches from bpMRI scans and aggregates them via transformer + attention pooling.
|
| 32 |
+
- 👁️ **Two-stage pipeline** — Visualise salient patches highlighting probable tumour regions.
|
| 33 |
+
- 🧹 **Preprocessing** — Preprocessing to minimize inter-center MRI acquisiton variability.
|
| 34 |
+
- 🏥 **End-to-end Pipeline** — Open source, clinically viable complete pipeline.
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## 🚀 Quick Start
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```bash
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git clone https://github.com/anirudhbalaraman/WSAttention-Prostate.git
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### Model Download
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```bash
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mkdir -p ./models
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curl -L -o models/file1.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/cspca_model.pth
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curl -L -o models/file2.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/pirads.pt
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curl -L -o models/file3.pth https://huggingface.co/anirudh0410/WSAttention-Prostate/resolve/main/prostate_segmentation_model.pt
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```
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## 🚀 Usage
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### Preprocessing
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