update sample files

dataset/samples/sample1/adc.nrrd

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+size 645959

dataset/samples/sample1/dwi.nrrd

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+size 645975

dataset/samples/sample1/t2.nrrd

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+size 6194000

dataset/samples/sample2/adc.nrrd

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dataset/samples/sample2/dwi.nrrd

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dataset/samples/sample2/t2.nrrd

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dataset/samples/sample3/adc.nrrd

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dataset/samples/sample3/dwi.nrrd

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dataset/samples/sample3/t2.nrrd

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+size 17204063

temp.ipynb

@@ -77,6 +77,87 @@
     "from monai.data import Dataset, load_decathlon_datalist, ITKReader, NumpyReader, PersistentDataset"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "id": "cad4a637",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import os\n",
+    "import shutil\n",
+    "import json\n",
+    "import random"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "id": "bea10ddb",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "[{'image': '10270_1000274.nrrd',\n",
+       "  'mask': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/prostate_seg_mask/10270_1000274.nrrd',\n",
+       "  'dwi': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/DWI_hist_matched/10270_1000274.nrrd',\n",
+       "  'adc': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/ADC_hist_matched/10270_1000274.nrrd',\n",
+       "  'heatmap': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/heatmap/10270_1000274.nrrd',\n",
+       "  'label': 0},\n",
+       " {'image': '11063_1001085.nrrd',\n",
+       "  'mask': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/prostate_seg_mask/11063_1001085.nrrd',\n",
+       "  'dwi': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/DWI_hist_matched/11063_1001085.nrrd',\n",
+       "  'adc': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/ADC_hist_matched/11063_1001085.nrrd',\n",
+       "  'heatmap': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/heatmap/11063_1001085.nrrd',\n",
+       "  'label': 1},\n",
+       " {'image': '11184_1001207.nrrd',\n",
+       "  'mask': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/prostate_seg_mask/11184_1001207.nrrd',\n",
+       "  'dwi': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/DWI_hist_matched/11184_1001207.nrrd',\n",
+       "  'adc': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/ADC_hist_matched/11184_1001207.nrrd',\n",
+       "  'heatmap': '/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/registered/heatmap/11184_1001207.nrrd',\n",
+       "  'label': 0}]"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "with open('/sc-scratch/sc-scratch-cc06-ag-ki-radiologie/prostate_foundation/WSAttention-Prostate/dataset/PICAI_cspca.json', 'r') as f:\n",
+    "    data = json.load(f)\n",
+    "samples = random.sample(data['test'],3)\n",
+    "samples"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "id": "aa932307",
+   "metadata": {},
+   "outputs": [
+    {
+     "ename": "IndexError",
+     "evalue": "list index out of range",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mIndexError\u001b[0m                                Traceback (most recent call last)",
+      "Cell \u001b[0;32mIn[15], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m sam \u001b[38;5;241m=\u001b[39m \u001b[43msamples\u001b[49m\u001b[43m[\u001b[49m\u001b[38;5;241;43m3\u001b[39;49m\u001b[43m]\u001b[49m[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mimage\u001b[39m\u001b[38;5;124m'\u001b[39m]\n\u001b[1;32m      2\u001b[0m \u001b[38;5;124;03m'''\u001b[39;00m\n\u001b[1;32m      3\u001b[0m \u001b[38;5;124;03mshutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/t2_images/'+sam, 'dataset/samples/sample3/t2.nrrd')\u001b[39;00m\n\u001b[1;32m      4\u001b[0m \u001b[38;5;124;03mshutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/DWI_images/'+sam, 'dataset/samples/sample3/dwi.nrrd')\u001b[39;00m\n\u001b[1;32m      5\u001b[0m \u001b[38;5;124;03mshutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/ADC_images/'+sam, 'dataset/samples/sample3/adc.nrrd')\u001b[39;00m\n\u001b[1;32m      6\u001b[0m \u001b[38;5;124;03m'''\u001b[39;00m\n",
+      "\u001b[0;31mIndexError\u001b[0m: list index out of range"
+     ]
+    }
+   ],
+   "source": [
+    "sam = samples[3]['image']\n",
+    "'''\n",
+    "shutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/t2_images/'+sam, 'dataset/samples/sample3/t2.nrrd')\n",
+    "shutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/DWI_images/'+sam, 'dataset/samples/sample3/dwi.nrrd')\n",
+    "shutil.copy('/sc-projects/sc-proj-cc06-ag-ki-radiologie/pirad_model_test_PICAI/ADC_images/'+sam, 'dataset/samples/sample3/adc.nrrd')\n",
+    "'''"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 2,