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Anirudh Balaraman commited on
Commit ·
5fa0689
1
Parent(s): 1927437
update mem requirement
Browse files- run_inference.py +32 -2
run_inference.py
CHANGED
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@@ -16,6 +16,32 @@ from src.preprocessing.histogram_match import histmatch
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from src.preprocessing.prostate_mask import get_segmask
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from src.preprocessing.register_and_crop import register_files
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from src.utils import get_parent_image, get_patch_coordinate, setup_logging
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def parse_args():
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@@ -70,20 +96,24 @@ if __name__ == "__main__":
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args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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logging.info("Loading PIRADS model")
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pirads_model =
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pirads_checkpoint = torch.load(
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os.path.join(args.project_dir, "models", "pirads.pt"), map_location="cpu"
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)
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pirads_model.load_state_dict(pirads_checkpoint["state_dict"])
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pirads_model.to(args.device)
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logging.info("Loading csPCa model")
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cspca_model = CSPCAModel(backbone=pirads_model).to(args.device)
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checkpt = torch.load(
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os.path.join(args.project_dir, "models", "cspca_model.pth"), map_location="cpu"
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)
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cspca_model.load_state_dict(checkpt["state_dict"])
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cspca_model = cspca_model.to(args.device)
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transform = data_transform(args)
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files = os.listdir(args.t2_dir)
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args.data_list = []
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from src.preprocessing.prostate_mask import get_segmask
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from src.preprocessing.register_and_crop import register_files
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from src.utils import get_parent_image, get_patch_coordinate, setup_logging
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import streamlit as st
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@st.cache_resource # <--- This decorator is the magic!
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def load_pirads_model(num_classes, mil_mode, project_dir, device):
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# Move the model initialization inside here
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model = MILModel3D(num_classes=num_classes, mil_mode=mil_mode)
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checkpoint = torch.load(
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os.path.join(project_dir, "models", "pirads.pt"), map_location="cpu"
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)
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model.load_state_dict(checkpoint["state_dict"])
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model.to(device)
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model.eval() # Set to evaluation mode
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return model
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@st.cache_resource
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def load_cspca_model(pirads_model, project_dir, device):
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# Move the model initialization inside here
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model = CSPCAModel(backbone=pirads_model).to(device)
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checkpt = torch.load(
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os.path.join(project_dir, "models", "cspca_model.pth"), map_location="cpu"
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)
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model.load_state_dict(checkpt["state_dict"])
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model = model.to(device)
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model.eval() # Set to evaluation mode
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return model
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def parse_args():
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args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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logging.info("Loading PIRADS model")
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pirads_model = load_pirads_model(args.num_classes, args.mil_mode, args.project_dir, args.device)
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'''
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pirads_checkpoint = torch.load(
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os.path.join(args.project_dir, "models", "pirads.pt"), map_location="cpu"
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)
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pirads_model.load_state_dict(pirads_checkpoint["state_dict"])
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pirads_model.to(args.device)
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'''
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logging.info("Loading csPCa model")
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cspca_model = load_cspca_model(pirads_model, args.project_dir, args.device)
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'''
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cspca_model = CSPCAModel(backbone=pirads_model).to(args.device)
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checkpt = torch.load(
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os.path.join(args.project_dir, "models", "cspca_model.pth"), map_location="cpu"
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)
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cspca_model.load_state_dict(checkpt["state_dict"])
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cspca_model = cspca_model.to(args.device)
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'''
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transform = data_transform(args)
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files = os.listdir(args.t2_dir)
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args.data_list = []
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