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fa51dd9 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 | #!/usr/bin/env python3
"""Submission inference script for Polypharmacy OpenEnv environment.
Required environment variables:
API_BASE_URL OpenAI-compatible base URL
MODEL_NAME Model identifier
HF_TOKEN API key/token
Optional:
POLYPHARMACY_ENV_URL Environment API base (default: http://localhost:7860)
"""
from __future__ import annotations
import json
import os
import re
from typing import Any, Dict, List
import requests
from openai import OpenAI
API_BASE_URL = os.getenv("API_BASE_URL", "https://router.huggingface.co/v1")
MODEL_NAME = os.getenv("MODEL_NAME", "Qwen/Qwen2.5-72B-Instruct")
HF_TOKEN = os.getenv("HF_TOKEN", "")
ENV_URL = os.getenv("POLYPHARMACY_ENV_URL", "http://localhost:7860").rstrip("/")
BENCHMARK = "polypharmacy_env"
TASKS = ["easy_screening", "budgeted_screening", "complex_tradeoff"]
MAX_STEPS = 16
TEMPERATURE = 0.0
MAX_TOKENS = 220
SYSTEM_PROMPT = (
"You are a clinical-pharmacist agent. "
"Return one JSON action only with keys matching this schema: "
'{"action_type":"query_ddi|propose_intervention|finish_review",'
'"drug_id_1":"", "drug_id_2":"", "target_drug_id":"",'
'"intervention_type":"stop|dose_reduce|substitute|add_monitoring",'
'"proposed_new_drug_id":"", "rationale":""}. '
"Prefer safe, high-impact actions and finish when useful actions are exhausted."
)
def _b(v: bool) -> str:
return str(bool(v)).lower()
def _fmt_reward(v: float) -> str:
return f"{float(v):.2f}"
def _clamp01(v: float) -> float:
return max(0.0, min(1.0, float(v)))
def log_start(task: str) -> None:
print(f"[START] task={task} env={BENCHMARK} model={MODEL_NAME}", flush=True)
def log_step(step: int, action_str: str, reward: float, done: bool, error: str | None) -> None:
err = error if error else "null"
print(
f"[STEP] step={step} action={action_str} reward={_fmt_reward(reward)} "
f"done={_b(done)} error={err}",
flush=True,
)
def log_end(success: bool, steps: int, score: float, rewards: List[float]) -> None:
rewards_str = ",".join(_fmt_reward(r) for r in rewards)
print(
f"[END] success={_b(success)} steps={steps} score={_clamp01(score):.3f} rewards={rewards_str}",
flush=True,
)
def _safe_json(text: str) -> Dict[str, Any]:
text = text.strip()
if text.startswith("```"):
text = re.sub(r"^```[a-zA-Z]*\n?", "", text)
text = text.replace("```", "").strip()
try:
data = json.loads(text)
if isinstance(data, dict):
return data
except Exception:
pass
return {"action_type": "finish_review"}
def _llm_action(client: OpenAI, obs: Dict[str, Any]) -> Dict[str, Any]:
meds = obs.get("current_medications", [])
summary = {
"step_index": obs.get("step_index", 0),
"remaining_query_budget": obs.get("remaining_query_budget", 0),
"remaining_intervention_budget": obs.get("remaining_intervention_budget", 0),
"conditions": obs.get("conditions", []),
"current_medications": [
{
"drug_id": m.get("drug_id"),
"generic_name": m.get("generic_name"),
"dose_mg": m.get("dose_mg"),
"beers_flags": m.get("beers_flags", []),
}
for m in meds
],
"interaction_queries": obs.get("interaction_queries", []),
"interventions": obs.get("interventions", []),
}
resp = client.chat.completions.create(
model=MODEL_NAME,
temperature=TEMPERATURE,
max_tokens=MAX_TOKENS,
messages=[
{"role": "system", "content": SYSTEM_PROMPT},
{"role": "user", "content": json.dumps(summary, separators=(",", ":"))},
],
)
content = (resp.choices[0].message.content or "").strip()
return _safe_json(content)
def _reset(task_id: str) -> Dict[str, Any]:
r = requests.post(f"{ENV_URL}/reset", json={"task_id": task_id}, timeout=45)
r.raise_for_status()
return r.json()
def _step(action: Dict[str, Any]) -> Dict[str, Any]:
r = requests.post(f"{ENV_URL}/step", json={"action": action}, timeout=45)
r.raise_for_status()
return r.json()
def run_task(client: OpenAI, task_id: str) -> None:
rewards: List[float] = []
steps = 0
success = False
score = 0.0
log_start(task_id)
try:
reset_payload = _reset(task_id)
obs = reset_payload.get("observation", {})
done = bool(reset_payload.get("done", False))
for i in range(1, MAX_STEPS + 1):
if done:
break
action = _llm_action(client, obs)
action_str = json.dumps(action, separators=(",", ":"))
step_payload = _step(action)
obs = step_payload.get("observation", {})
reward = float(step_payload.get("reward") or 0.0)
done = bool(step_payload.get("done", False))
metadata = (obs or {}).get("metadata", {}) or {}
last_error = metadata.get("error")
rewards.append(reward)
steps = i
log_step(i, action_str, reward, done, str(last_error) if last_error else None)
if done:
raw_score = metadata.get("grader_score", None)
if raw_score is not None:
score = _clamp01(float(raw_score))
else:
score = _clamp01(sum(max(0.0, r) for r in rewards) / max(len(rewards), 1))
success = score > 0.0
break
except Exception:
# Still emit END to keep evaluator parser stable.
success = False
finally:
log_end(success=success, steps=steps, score=score, rewards=rewards)
def main() -> int:
if not HF_TOKEN:
print("HF_TOKEN is required", flush=True)
return 1
client = OpenAI(base_url=API_BASE_URL, api_key=HF_TOKEN)
for task in TASKS:
run_task(client, task)
return 0
if __name__ == "__main__":
raise SystemExit(main())
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