feat(deployment): update huggingface

Dockerfile

@@ -17,14 +17,14 @@ RUN uv venv /app/nml-ai-venv
 ENV VIRTUAL_ENV=/app/nml-ai-venv
 ENV PATH="/app/nml-ai-venv/bin:$PATH"
 
-RUN uv pip install .
+RUN uv pip install -r requirements.txt
 
 # in huggingface folder
-COPY --chown=user scripts/* /app/scripts/
+COPY --chown=user deployments/huggingface/scripts/* /app/scripts/
 RUN chmod +x scripts/docker-deploy.sh
 
 ENV NML_AI_CHAT_MODEL="huggingface:Qwen/Qwen3-30B-A3B-Instruct-2507:cheapest"
-ENV NML_AI_EMBEDDING_MODEL="huggingface:BAAI/bge-m3:cheapest"
+ENV NML_AI_VS_CONFIG="/app/scripts/vector-stores.json"
 ENV RUNNING_IN_DOCKER=1
 
 CMD ["./scripts/docker-deploy.sh"]

README.md

@@ -14,6 +14,7 @@ tags: ["computational-neuroscience", "computational-modelling", "neuroscience",
 
 Sources for this space live here on GitHub: https://github.com/NeuroML/neuroml-ai/
 
-![Langchain schematic](https://github.com/NeuroML/neuroml-ai/raw/main/neuroml_ai/nml-ai-lang-graph.png "Langchain schematic")
+![Langchain schematic](https://github.com/NeuroML/neuroml-ai/raw/main/neuroml_ai/nml-ai-assistant-lang-graph.png "Langchain schematic")
+![RAG schematic](https://github.com/NeuroML/neuroml-ai/raw/main/rag_pkg/lang-graph.png "RAG schematic")
 
 

scripts/docker-deploy.sh

@@ -1,17 +1,18 @@
 #!/bin/bash
 
-# Copyright 2025 Ankur Sinha
+# Copyright 2026 Ankur Sinha
 # Author: Ankur Sinha <sanjay DOT ankur AT gmail DOT com> 
 # File:  docker/deploy.sh
 #
 # Script for docker deployments
 
 
-echo "Re-starting MCP server"
-nml-mcp &
+# currently unused
+#echo "Re-starting MCP server"
+#nml-mcp &
 
 echo "Starting fastapi"
-fastapi dev neuroml_ai/api/main.py --port 8005 &
+fastapi dev neuroml_ai/neuroml_ai/api/main.py --port 8005 &
 
 echo "Starting streamlit frontend"
-streamlit run neuroml_ai/streamlit_ui.py --server.port=7860 --server.address=0.0.0.0
+streamlit run neuroml_ai/neuroml_ai/ui/streamlit_ui.py --server.port=7860 --server.address=0.0.0.0

scripts/vector-stores.json

@@ -0,0 +1,22 @@
+{
+    "embedding_model": "huggingface:BAAI/bge-m3:cheapest",
+    "domains": {
+        "NeuroML": {
+            "description": "The NeuroML standard for computational modelling in neuroscience and the associated software ecosystem",
+            "vector_stores": [
+                {
+                    "name": "nml-docs",
+                    "path": "/app/neuroml-ai/rag_pkg/gen_rag/data/vector-stores/nml-docs_bge-m3.db"
+                },
+                {
+                    "name": "nml-elife",
+                    "path": "/app/neuroml-ai/rag_pkg/gen_rag/data/vector-stores/nml-elife_bge-m3.db"
+                },
+                {
+                    "name": "nml-schema-docs",
+                    "path": "/app/neuroml-ai/rag_pkg/gen_rag/data/vector-stores/nml-schema-docs_bge-m3.db"
+                }
+            ]
+        }
+    }
+}