Update app.py
Browse files
app.py
CHANGED
|
@@ -2667,26 +2667,12 @@ def create_interface():
|
|
| 2667 |
)
|
| 2668 |
|
| 2669 |
with gr.Blocks(theme=theme, title="ProFound: Vision Foundation Models for Prostate Multiparametric MR Images") as demo:
|
| 2670 |
-
# Header
|
| 2671 |
-
|
| 2672 |
-
|
| 2673 |
-
|
| 2674 |
-
|
| 2675 |
-
|
| 2676 |
-
ProFound is a suite of vision foundation models, pre-trained on multiparametric 3D magnetic resonance (MR) images from large collections of prostate cancer patients.
|
| 2677 |
-
|
| 2678 |
-
For more details, check out our [GitHub repository](https://github.com/pipiwang/ProFound).
|
| 2679 |
-
""")
|
| 2680 |
-
with gr.Column(scale=1):
|
| 2681 |
-
# Display UCL Hawkes Institute logo
|
| 2682 |
-
gr.Image(
|
| 2683 |
-
value="UCL-Hawkes-Institute-logo.jpg",
|
| 2684 |
-
show_label=False,
|
| 2685 |
-
show_download_button=False,
|
| 2686 |
-
container=False,
|
| 2687 |
-
height=120,
|
| 2688 |
-
interactive=False
|
| 2689 |
-
)
|
| 2690 |
|
| 2691 |
# Create State components to manage data
|
| 2692 |
pretrain_state = gr.State(value=None)
|
|
@@ -2756,15 +2742,7 @@ def create_interface():
|
|
| 2756 |
outputs=[pretrain_plot]
|
| 2757 |
)
|
| 2758 |
|
| 2759 |
-
gr.Markdown("""
|
| 2760 |
-
**Acknowledgement**
|
| 2761 |
-
|
| 2762 |
-
This work is supported by the International Alliance for Cancer Early Detection, an alliance between Cancer Research UK, Canary Center at Stanford University, the University of Cambridge, OHSU Knight Cancer Institute, University College London and the University of Manchester.
|
| 2763 |
|
| 2764 |
-
This work is also supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre.
|
| 2765 |
-
|
| 2766 |
-
The authors acknowledge the use of resources provided by the Isambard-AI National AI Research Resource (AIRR). Isambard-AI is operated by the University of Bristol and is funded by the UK Government's Department for Science, Innovation and Technology (DSIT) via UK Research and Innovation; and the Science and Technology Facilities Council [ST/AIRR/I-A-I/1023].
|
| 2767 |
-
""")
|
| 2768 |
|
| 2769 |
# Classification tab
|
| 2770 |
with gr.TabItem("π― Assessment of Prostate Cancer Patients", id="classification"):
|
|
@@ -2804,15 +2782,7 @@ def create_interface():
|
|
| 2804 |
outputs=[cls_plot, cls_result]
|
| 2805 |
)
|
| 2806 |
|
| 2807 |
-
gr.Markdown("""
|
| 2808 |
-
**Acknowledgement**
|
| 2809 |
-
|
| 2810 |
-
This work is supported by the International Alliance for Cancer Early Detection, an alliance between Cancer Research UK, Canary Center at Stanford University, the University of Cambridge, OHSU Knight Cancer Institute, University College London and the University of Manchester.
|
| 2811 |
|
| 2812 |
-
This work is also supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre.
|
| 2813 |
-
|
| 2814 |
-
The authors acknowledge the use of resources provided by the Isambard-AI National AI Research Resource (AIRR). Isambard-AI is operated by the University of Bristol and is funded by the UK Government's Department for Science, Innovation and Technology (DSIT) via UK Research and Innovation; and the Science and Technology Facilities Council [ST/AIRR/I-A-I/1023].
|
| 2815 |
-
""")
|
| 2816 |
|
| 2817 |
# Segmentation tab
|
| 2818 |
with gr.TabItem("βοΈ Segmentation of Prostate Cancer Lesions", id="segmentation"):
|
|
@@ -2885,15 +2855,7 @@ def create_interface():
|
|
| 2885 |
outputs=[slice_browser_plot]
|
| 2886 |
)
|
| 2887 |
|
| 2888 |
-
gr.Markdown("""
|
| 2889 |
-
**Acknowledgement**
|
| 2890 |
-
|
| 2891 |
-
This work is supported by the International Alliance for Cancer Early Detection, an alliance between Cancer Research UK, Canary Center at Stanford University, the University of Cambridge, OHSU Knight Cancer Institute, University College London and the University of Manchester.
|
| 2892 |
|
| 2893 |
-
This work is also supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre.
|
| 2894 |
-
|
| 2895 |
-
The authors acknowledge the use of resources provided by the Isambard-AI National AI Research Resource (AIRR). Isambard-AI is operated by the University of Bristol and is funded by the UK Government's Department for Science, Innovation and Technology (DSIT) via UK Research and Innovation; and the Science and Technology Facilities Council [ST/AIRR/I-A-I/1023].
|
| 2896 |
-
""")
|
| 2897 |
|
| 2898 |
# Anatomy Segmentation tab - NEW
|
| 2899 |
with gr.TabItem("π« Segmentation of Prostate Anatomy", id="anatomy_segmentation"):
|
|
@@ -2992,15 +2954,7 @@ def create_interface():
|
|
| 2992 |
outputs=[anat_volume_3d_plot]
|
| 2993 |
)
|
| 2994 |
|
| 2995 |
-
gr.Markdown("""
|
| 2996 |
-
**Acknowledgement**
|
| 2997 |
-
|
| 2998 |
-
This work is supported by the International Alliance for Cancer Early Detection, an alliance between Cancer Research UK, Canary Center at Stanford University, the University of Cambridge, OHSU Knight Cancer Institute, University College London and the University of Manchester.
|
| 2999 |
|
| 3000 |
-
This work is also supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre.
|
| 3001 |
-
|
| 3002 |
-
The authors acknowledge the use of resources provided by the Isambard-AI National AI Research Resource (AIRR). Isambard-AI is operated by the University of Bristol and is funded by the UK Government's Department for Science, Innovation and Technology (DSIT) via UK Research and Innovation; and the Science and Technology Facilities Council [ST/AIRR/I-A-I/1023].
|
| 3003 |
-
""")
|
| 3004 |
|
| 3005 |
return demo
|
| 3006 |
|
|
|
|
| 2667 |
)
|
| 2668 |
|
| 2669 |
with gr.Blocks(theme=theme, title="ProFound: Vision Foundation Models for Prostate Multiparametric MR Images") as demo:
|
| 2670 |
+
# Header
|
| 2671 |
+
gr.Markdown("""
|
| 2672 |
+
# ProFound: Vision Foundation Models for Prostate Multiparametric MR Images π₯π¬
|
| 2673 |
+
|
| 2674 |
+
ProFound is a suite of vision foundation models, pre-trained on multiparametric 3D magnetic resonance (MR) images from large collections of prostate cancer patients.
|
| 2675 |
+
""")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2676 |
|
| 2677 |
# Create State components to manage data
|
| 2678 |
pretrain_state = gr.State(value=None)
|
|
|
|
| 2742 |
outputs=[pretrain_plot]
|
| 2743 |
)
|
| 2744 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2745 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2746 |
|
| 2747 |
# Classification tab
|
| 2748 |
with gr.TabItem("π― Assessment of Prostate Cancer Patients", id="classification"):
|
|
|
|
| 2782 |
outputs=[cls_plot, cls_result]
|
| 2783 |
)
|
| 2784 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2785 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2786 |
|
| 2787 |
# Segmentation tab
|
| 2788 |
with gr.TabItem("βοΈ Segmentation of Prostate Cancer Lesions", id="segmentation"):
|
|
|
|
| 2855 |
outputs=[slice_browser_plot]
|
| 2856 |
)
|
| 2857 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2858 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2859 |
|
| 2860 |
# Anatomy Segmentation tab - NEW
|
| 2861 |
with gr.TabItem("π« Segmentation of Prostate Anatomy", id="anatomy_segmentation"):
|
|
|
|
| 2954 |
outputs=[anat_volume_3d_plot]
|
| 2955 |
)
|
| 2956 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2957 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2958 |
|
| 2959 |
return demo
|
| 2960 |
|