Update TODO.md with Exp 3 full PCA/SVD results
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TODO.md
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# NeuroGolf Solver β Roadmap
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> Current: v5.
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> Philosophy: **Research β Design β Experiment β Analyze β Research** loop until confirmed score increase.
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> Rule: **NEVER claim a feature works without full arc-gen validation on representative tasks.**
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> Updated: 2026-04-26 β
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## Phase 2: Fix Arc-Gen Survival β
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> **Status:**
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> **
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> **Strategy:** Coordinated experiment sequence β each builds on the previous. Do NOT test in isolation.
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### The Problem (with numbers from conv.py)
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Current `_lstsq_conv()` runs
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| Kernel | p (features) | n (patches, 7Γ7 grid, 4 ex) | p/n | Regime |
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| ks=1 | 10 | 196 | 0.05 | β
Safe underparameterized |
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| ks=3 | 90 | 196 | 0.46 | β
Underparameterized |
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| **ks=5** | **250** | **196** | **1.27** | **β INTERPOLATION THRESHOLD** |
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| **ks=7** | **490** | **196** | **2.50** | **β PAST THRESHOLD
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| **ks=9** | **810** | **196** | **4.13** | **β οΈ Near peak** |
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| ks=11 | 1210 | 196 | 6.17 | Overparameterized |
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| ks=29 | 8410 | 196 | 42.9 | Heavily overparameterized |
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The solver accepts ks=5 (which perfectly interpolates training via minimum-norm solution) and **never tries ks=11+** which might actually generalize.
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### Literature Backing
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| Paper | arxiv | Key Finding for Us |
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|-------|-------|--------------------|
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| Nakkiran et al. 2019 (NeurIPS) | `1912.02292` | Test error peaks at pβn
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| Segert 2023 | `2311.11093` |
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| Zhou & Ge 2023 (NeurIPS) | `2302.00257` | L1
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| Ali et al. 2019 | β | GD with early stopping β‘ Ridge with Ξ»=1/(2t). Since Ridge is suboptimal here, GD early stopping is also suboptimal. |
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| Liao & Gu 2024 (CompressARC) | `2512.06104` | ARC solvers that generalize use regularized fitting (MDL/KL), not ridgeless interpolation. Direct evidence regularization is needed. |
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### Coordinated Experiment Sequence
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> **Goal: highest-scoring valid model per task**, not first-valid.
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#### Exp
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- [ ] Identify the ~250 tasks that fail arc-gen β classify by ks and p/n ratio
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- **Exit criteria:** Have baseline numbers to compare against
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---
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#### Exp
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> *1 line change per solver. Eliminates the interpolation threshold peak entirely.*
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**
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**10% doubt:** Some tasks with large grids (21Γ21, 16 examples β nβ7056) have p/n < 1 even at ks=7. For those, ks=7 is safe. But the solver can't distinguish these cases without computing p/n per-task.
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- [ ] Change ks list in all 4 conv solvers: `[1, 3, 5, 7, 9, 11, ...]` β `[1, 3, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29]`
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- Files: `conv.py` β `solve_conv_fixed`, `solve_conv_variable`, `solve_conv_diffshape`, `solve_conv_var_diff`
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- [ ] Run all 400 with arc-gen. Compare survival rate vs Exp 0.
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- **Accept if:** arc-gen survival improves by β₯5 tasks
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- **Expected:** +10-30 tasks
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**15% doubt:** Runtime. Trying all 12 kernel sizes Γ 2 bias options Γ arc-gen validation = up to 24 candidates per task. May blow the 12hr Kaggle time budget. Mitigate: set tighter per-candidate timeout, parallelize validation.
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- [ ] Refactor `solve_conv_*` to return **list of (model, ks, cost)** candidates instead of first-valid
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- [ ] Refactor `solve_task` to collect all candidates (analytical + all conv variants), pick cheapest valid
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- [ ] Add static cost estimation to pick cheapest before saving
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- [ ] Run all 400. Compare total score vs Exp 1.
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- **Accept if:** total score improves by β₯3% on existing solved tasks
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- **Expected:** +5-15 score points on tasks already solved (better model selection)
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---
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#### Exp 3: PCA / Truncated SVD Before lstsq β¬ β Confidence: **75%**
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> *~30 lines in `_lstsq_conv()`. Maps every ks into effective underparameterized regime.*
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**Evidence:** Segert 2023 (`2311.11093`) β PCA regression is provably better than Ridge for low-rank covariance. Our patch covariance has effective rank ~10-40 (few active colors in one-hot encoding). Truncating to top-k components removes the ~(p-40) pure noise dimensions that ridgeless lstsq amplifies into catastrophic overfitting.
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**25% doubt:** The variance threshold (99%) might be wrong for some tasks. Too aggressive truncation (k too small) kills signal. Too little (k too large) doesn't fix the problem. Need per-task adaptive k based on singular value gap.
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**Implementation:**
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```python
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def _lstsq_pcr(P, T_oh, var_threshold=0.99):
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U, s, Vt = np.linalg.svd(P, full_matrices=False)
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cumvar = np.cumsum(s**2) / np.sum(s**2)
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k = np.searchsorted(cumvar, var_threshold) + 1
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k = max(k, 5) # floor: keep at least 5 components
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P_red = U[:, :k] * s[:k] # n Γ k, always k << n
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w_red = np.linalg.lstsq(P_red, T_oh, rcond=None)[0]
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w_full = Vt[:k].T @ w_red # back to p-dim for ONNX weights
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return w_full
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```
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- [ ] Add `_lstsq_pcr()` to `conv.py` alongside existing `_lstsq_conv()`
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- [ ] Use PCA path for all ks where p/n > 0.5 (safe margin below threshold)
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- [ ] Keep raw lstsq for ks=1,3 where p << n (PCA unnecessary, adds cost)
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- [ ] Try var_threshold in {0.95, 0.99, 0.999} β pick best per arc-gen survival
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- [ ] Run all 400. Compare survival rate vs Exp 1.
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- **Accept if:** arc-gen survival improves by β₯10 tasks vs Exp 1
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- **Expected:** +15-40 tasks (the big win β makes previously-impossible ks usable)
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---
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- [ ] Run all 400. Compare vs Exp 3.
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- **Accept if:** arc-gen survival improves by β₯3 tasks vs Exp 3
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- **Expected:** +5-15 tasks (modest but free)
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---
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#### Exp 5: Lasso (L1) for Large Kernels β¬ β Confidence: **55%**
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**Evidence:** Zhou & Ge 2023 (`2302.00257`) β L1 achieves near-minimax O(ΟΒ²Β·sΒ·log(d/s)/n) for sparse Ξ²*, vs Ridge's Ξ©(βΞ²*βΒ²). ARC one-hot patches are sparse (3-5 of 10 channels active). Segert 2023 Section A.10: Lasso competitive with PCA/Nuclear in sparse regime, wins ~40% of cases.
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**45% doubt:** (1) Lasso is slow β coordinate descent vs single SVD. (2) `alpha` tuning via CV with only 4-6 training examples is fragile. (3) Need `MultiTaskLassoCV` for 10-column one-hot target, not scalar `LassoCV`. (4) sklearn adds a dependency (not available on Kaggle by default β need to verify).
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- [ ] Add `_lstsq_lasso()` using `sklearn.linear_model.MultiTaskLassoCV`
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- [ ] Use Lasso only for ksβ₯11 where p > n even after PCA (complement, not replacement)
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- [ ] Verify sklearn available on Kaggle runtime
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- [ ] Run all 400. Compare vs Exp 3+4.
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- **Accept if:** arc-gen survival improves by β₯5 tasks vs Exp 3+4
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- **Expected:** +5-10 tasks (incremental over PCA)
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#### Exp 6 [DEPRIORITIZED]: GD with Early Stopping β¬ β Confidence: **40%**
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> *Moved to backlog. Literature shows GD early stopping β‘ Ridge (Ali et al. 2019), which is suboptimal for our low-rank regime. Only revisit if Exp 1-5 plateau.*
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- [ ] If attempted: use `sklearn.linear_model.SGDRegressor` with `early_stopping=True`
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###
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> *Needs GPU, slow, complex. Only after simpler fixes validated.*
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#### Exp 8 [DEPRIORITIZED]: Generate More ARC-GEN Data β¬ β Confidence: **45%**
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> *Only useful WITH regularization in place (Exp 3+). Without it, more rows can *hurt* (Nakkiran 2019 sample-wise non-monotonicity).*
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- [ ] Only attempt after Exp 4 to see if cap increase helped
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- [ ] If yes: generate 1000+ examples/task using ARC-GEN generator
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---
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### Phase 2 Combined Projection
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| Exp 1 alone (skip ks) | 60-80 | ~800-1000 | 90% |
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| Exp 1+2 (skip + best-of-N) | 60-80 tasks, better scores | ~900-1100 | 85% |
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| Exp 1+2+3 (+ PCA) | 90-130 | ~1200-1700 | 70% |
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| Exp 1+2+3+4 (+ more arc-gen) | 100-140 | ~1400-1900 | 60% |
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| Full stack 1-5 (+ Lasso) | 110-150 | ~1600-2200 | 50% |
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**The big win is the Exp 1+2+3 stack.** Skip bad kernels, pick best model, PCA regularization. If those three work, we roughly double or triple the LB score.
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- [ ] **Validate**: Compare static profiler vs onnx_tool on 50 random models.
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- Accept if divergence >5% and fix profiler.
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> **Note:** Best-of-N model selection moved to Phase 2 Exp 2 β it's part of the core overfitting fix, not just optimization.
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## BLENDING β EXPLICITLY EXCLUDED
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| 2026-04-25 | v5 untested code | 10 | 3/10 FAILED arc-gen | **REVERTED** |
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| 2026-04-26 | v5.0 refactor | 394 | **49 solved, ~603.6 score, budget=5s** | New baseline |
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| 2026-04-26 | Exp 0: Baseline | 25 conv tasks | 24/25 solved, score=253 | Baseline for conv |
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| 2026-04-26 | Exp 1: Skip ks=5,7,9 | 25 conv+30 unsolved | **HURTS 2 solved tasks
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| 2026-04-26 | Exp 2: Best-of-N | 25 conv+30 unsolved | **No new solves
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| 2026-04-26 | Exp 3: Ridge reg | 4
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| 2026-04-26 | Exp 3: PCA/trunc-SVD | Task 129
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### CRITICAL FINDING (2026-04-26)
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The "307β50 arc-gen survival gap" is **NOT
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**Evidence:**
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1. Only
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2. Ridge (L2) on 4 victim tasks Γ 5 alphas: **zero arc-gen passes**.
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3. PCA/truncated-SVD
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4.
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**Root cause
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**Impact
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## Research Queue (Papers Read β
/ To Read)
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1. β
**Nakkiran et al. 2019** (`1912.02292`) β Double descent
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2. β
**Segert 2023** (`2311.11093`) β
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3. β
**Zhou & Ge 2023** (`2302.00257`) β L1 near-minimax for sparse signals
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4. β
**Liu et al. 2023** (`2302.01088`) β More rows help only with regularization
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5. β
**Liao & Gu 2024** (`2512.06104`) β CompressARC
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**Ali et al. 2019** β GD early stopping β‘ Ridge (therefore suboptimal here)
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7. [ ] **ARC Prize 2025 Technical Report** (`2601.10904`) β competition landscape, top approaches
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# NeuroGolf Solver β Roadmap
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> Current: v5.1 Β· 49 arc-gen validated (budget=5s) Β· ~603.6 score Β· Target: 3000+
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> Philosophy: **Research β Design β Experiment β Analyze β Research** loop until confirmed score increase.
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> Rule: **NEVER claim a feature works without full arc-gen validation on representative tasks.**
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> Updated: 2026-04-26 β Exp 3 (PCA/SVD) fully tested on 400 tasks. 0 PCR solves. Architecture mismatch confirmed.
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## Phase 2: Fix Arc-Gen Survival β EXPERIMENTS COMPLETED
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> **Status:** Exps 0-3 tested. Root cause is architecture mismatch, not regularization.
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> **Action:** Move to Phase 3 (new solver types). Keep PCR code for future Lasso/Ridge experiments.
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### The Problem (with numbers from conv.py)
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Current `_lstsq_conv()` runs `np.linalg.lstsq(P, T_oh, rcond=None)` β zero regularization.
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v5.1 refactored to composable primitives: `_build_patch_matrix` + `_solve_weights` + `_extract_weights`.
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PCR (`_solve_weights_pcr`) added as deferred 2nd-pass fallback.
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| Kernel | p (features) | n (patches, 7Γ7 grid, 4 ex) | p/n | Regime |
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|--------|-------------|------------------------------|-----|--------|
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| ks=1 | 10 | 196 | 0.05 | β
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| ks=3 | 90 | 196 | 0.46 | β
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| **ks=5** | **250** | **196** | **1.27** | **β INTERPOLATION THRESHOLD** |
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| **ks=7** | **490** | **196** | **2.50** | **β PAST THRESHOLD** |
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| ks=11 | 1210 | 196 | 6.17 | Overparameterized |
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| ks=29 | 8410 | 196 | 42.9 | Heavily overparameterized |
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### Literature Backing
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| Paper | arxiv | Key Finding for Us |
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|-------|-------|--------------------|
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| Nakkiran et al. 2019 (NeurIPS) | `1912.02292` | Test error peaks at pβn. Correct theory but inapplicable β tasks fail for architecture mismatch, not regularization. |
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| Segert 2023 | `2311.11093` | PCA > Ridge for low-rank covariance. Tested: 0/400 PCR solves. Signal is in the noise dimensions PCA removes. |
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| Zhou & Ge 2023 (NeurIPS) | `2302.00257` | L1 near-minimax for sparse signals. **Untested** β may still help for Exp 5. |
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| Liao & Gu 2024 (CompressARC) | `2512.06104` | Regularization enables ARC generalization. True in their framework (MDL/KL) but conv lstsq is a different beast. |
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### Experiment Results
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#### Exp 0: Baseline Measurement [-] DONE
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- v5.0 on 400 tasks with budget=5s: **49 solved, 603.6 score**
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- Conv breakdown: 16 conv_var + 8 conv_fixed + 1 conv_diff = 25 conv tasks
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#### Exp 1: Skip ks=5,7,9 [-] REJECTED
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- HURTS 2 solved tasks (322@ks5, 299@ks9), helps 0 new
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#### Exp 2: Best-of-N [~] NEUTRAL
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- No new solves on unsolved tasks. Score optimization only.
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#### Exp 3: PCA / Truncated SVD [-] REJECTED β Confidence: ~~75%~~ β **0%**
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**Full test results (2026-04-26):**
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**Diagnostic on 25 solved conv tasks:**
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| p/n regime | Tasks | PCR at 0.99 | Arc-gen impact |
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| p/n < 0.5 (safe) | 17 | Mostly fits train | Already 100% ag β no improvement possible |
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| p/n > 1.0 (danger) | 8 | 4 fail to fit train at ANY threshold | PCR removes dimensions that carry signal |
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| 89 |
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| 90 |
+
**Diagnostic on 345 unsolved tasks (same-shape only, ksβ€9):**
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| 91 |
+
- Only **10 tasks** have any ks where lstsq fits training
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| 92 |
+
- PCR improves arc-gen accuracy on **4 tasks** (by 3-9%) but **none reach 100%** required for validation
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| 93 |
+
- Task 32: lstsq 87.5% β PCR 94.9% (still fails)
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| 94 |
+
- Task 389: lstsq 87.2% β PCR 95.7% (still fails)
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| 95 |
+
- Task 129: lstsq 59.6% β PCR 63.0% (still fails)
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| 96 |
+
- Task 229: lstsq 57.0% β PCR 60.0% (still fails)
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| 97 |
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| 98 |
+
**Full 400-task run with PCR-enhanced solver:**
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| 99 |
+
- 50 solved (vs 49 baseline) β the +1 is Task 61, a **timing artifact** (took 11.8s, not a PCR solve)
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| 100 |
+
- **0 tasks solved via PCR path**
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| 101 |
+
- **0 regressions** on existing 25 conv tasks
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| 102 |
+
- Code kept: composable primitives useful for future Lasso/Ridge experiments
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| 103 |
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| 104 |
+
**Why PCR failed:**
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| 105 |
+
1. For tasks with p/n < 0.5: lstsq already generalizes perfectly. PCR is unnecessary.
|
| 106 |
+
2. For tasks with p/n > 1.0: the training signal requires ALL patch dimensions to interpolate. PCA truncation removes exactly the dimensions that encode the (noisy) signal, causing train_fail.
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| 107 |
+
3. For unsolved tasks: most (~335/345) can't be fit by ANY ks β architecture mismatch (conv can't represent the required operation). The 10 that fit have wrong arc-gen behavior because the task requires global reasoning, not local patches.
|
| 108 |
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| 109 |
+
#### Exp 4: Increase Arc-Gen Fitting Cap [DEPRIORITIZED]
|
| 110 |
+
> Only works with regularization. Since regularization (Exp 3) didn't help, this is moot.
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| 111 |
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| 112 |
#### Exp 5: Lasso (L1) for Large Kernels β¬ β Confidence: **55%**
|
| 113 |
+
> Still potentially useful β L1 selects sparse features differently from PCA. Untested.
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| 114 |
+
> But given that only 10/345 unsolved tasks even have lstsq fits, the ceiling is very low.
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| 115 |
|
| 116 |
+
#### Exp 6-8: [DEPRIORITIZED]
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|
| 117 |
|
| 118 |
---
|
| 119 |
|
| 120 |
+
### Phase 2 Post-Mortem
|
|
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|
| 121 |
|
| 122 |
+
**Original projection was wildly optimistic:**
|
| 123 |
+
| Scenario | Projected | Actual |
|
| 124 |
+
|----------|-----------|--------|
|
| 125 |
+
| Exp 1 alone | 60-80 tasks | **HURT** 2 tasks |
|
| 126 |
+
| Exp 1+2+3 | 90-130 tasks | **49 tasks** (no change) |
|
| 127 |
|
| 128 |
+
**Root cause confirmed:** Architecture mismatch, not regularization. The ~300 unsolved tasks require operations (mode counting, flood fill, outline detection, pattern matching) that NO local convolution can represent, regardless of regularization.
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| 129 |
|
| 130 |
+
**Next steps:** Phase 3 (new solver types) or new architectures. The conv solver has reached its ceiling at ~25 tasks.
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|
| 131 |
|
| 132 |
---
|
| 133 |
|
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|
| 168 |
- [ ] **Validate**: Compare static profiler vs onnx_tool on 50 random models.
|
| 169 |
- Accept if divergence >5% and fix profiler.
|
| 170 |
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|
| 171 |
---
|
| 172 |
|
| 173 |
## BLENDING β EXPLICITLY EXCLUDED
|
|
|
|
| 190 |
| 2026-04-25 | v5 untested code | 10 | 3/10 FAILED arc-gen | **REVERTED** |
|
| 191 |
| 2026-04-26 | v5.0 refactor | 394 | **49 solved, ~603.6 score, budget=5s** | New baseline |
|
| 192 |
| 2026-04-26 | Exp 0: Baseline | 25 conv tasks | 24/25 solved, score=253 | Baseline for conv |
|
| 193 |
+
| 2026-04-26 | Exp 1: Skip ks=5,7,9 | 25 conv+30 unsolved | **HURTS 2 solved tasks** | **[-] REJECTED** |
|
| 194 |
+
| 2026-04-26 | Exp 2: Best-of-N | 25 conv+30 unsolved | **No new solves** | **[~] NEUTRAL** |
|
| 195 |
+
| 2026-04-26 | Exp 3: Ridge reg | 4 victims Γ 5 alphas | **0/4 pass arc-gen** | **[-] REJECTED** |
|
| 196 |
+
| 2026-04-26 | Exp 3: PCA/trunc-SVD (partial) | Task 129 | **0 pass** | **[-] REJECTED for lstsq** |
|
| 197 |
+
| 2026-04-26 | **Exp 3: Full PCA/SVD** | **400 tasks** | **0 PCR solves, 0 regressions, code refactored** | **[-] REJECTED (code kept)** |
|
| 198 |
|
| 199 |
+
### CRITICAL FINDING (2026-04-26) β STRENGTHENED
|
| 200 |
|
| 201 |
+
The "307β50 arc-gen survival gap" is **NOT caused by lstsq overfitting**. Period.
|
| 202 |
|
| 203 |
+
**Evidence (strengthened with full Exp 3 data):**
|
| 204 |
+
1. Only **10 of 345** unsolved same-shape tasks pass train-fit at any ksβ€9.
|
| 205 |
2. Ridge (L2) on 4 victim tasks Γ 5 alphas: **zero arc-gen passes**.
|
| 206 |
+
3. PCA/truncated-SVD on 400 tasks with thresholds {0.999, 0.99, 0.95}: **zero arc-gen validates**.
|
| 207 |
+
4. PCR improves arc-gen accuracy by 3-9% on 4 unsolved tasks β but 95.7% is the ceiling. 100% is required.
|
| 208 |
+
5. For tasks where conv IS the right solver (25 tasks), lstsq already generalizes perfectly (100% arc-gen at p/n < 0.5).
|
| 209 |
|
| 210 |
+
**Root cause:** Architecture mismatch. Tasks that fail arc-gen require operations (mode counting, flood fill, outline detection, conditional logic) that no local convolution can represent.
|
| 211 |
|
| 212 |
+
**Impact:** Phase 2 regularization experiments are exhausted. Score improvement must come from:
|
| 213 |
+
- Phase 1a: Opset 17 conversions (reduce cost on existing solved tasks)
|
| 214 |
+
- Phase 3: New solver types (hash matchers, pattern detectors, LLM rescue)
|
| 215 |
+
- Phase 4: ONNX optimization + scoring alignment
|
| 216 |
|
| 217 |
---
|
| 218 |
|
|
|
|
| 228 |
|
| 229 |
## Research Queue (Papers Read β
/ To Read)
|
| 230 |
|
| 231 |
+
1. β
**Nakkiran et al. 2019** (`1912.02292`) β Double descent. Correct theory, inapplicable to our regime.
|
| 232 |
+
2. β
**Segert 2023** (`2311.11093`) β PCA > Ridge. Tested: **0/400 PCR solves**.
|
| 233 |
+
3. β
**Zhou & Ge 2023** (`2302.00257`) β L1 near-minimax for sparse signals. Untested.
|
| 234 |
+
4. β
**Liu et al. 2023** (`2302.01088`) β More rows help only with regularization. Moot since regularization doesn't help.
|
| 235 |
+
5. β
**Liao & Gu 2024** (`2512.06104`) β CompressARC. Different regime (MDL/KL vs conv lstsq).
|
| 236 |
6. β
**Ali et al. 2019** β GD early stopping β‘ Ridge (therefore suboptimal here)
|
| 237 |
7. [ ] **ARC Prize 2025 Technical Report** (`2601.10904`) β competition landscape, top approaches
|
| 238 |
|