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@@ -138,3 +138,39 @@ instruct-pix2pix-BioMedCLIP-concat-newdata/stable_diffusion/data/inpainting_exam
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instruct-pix2pix-BioMedCLIP-concat-newdata-disease/.gitignore

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+__pycache__/
+*.pyc
+*.pyo
+*.swp
+*.log
+*.ckpt
+.env
+.venv/
+data/
+checkpoints/
+outputs/
+logs/

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/CUDA_12.8_UPGRADE_GUIDE.md

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+# Installation Guide for CUDA 12.8 Compatibility
+
+## Main Conflicts Identified:
+
+### 1. **Triton 2.1.0** → **Triton 3.1.0**
+   - **Problem**: Triton 2.1.0 is compiled for CUDA 12.1, incompatible with CUDA 12.8
+   - **Solution**: Upgrade to Triton 3.1.0 which supports CUDA 12.x
+
+### 2. **Missing PyTorch Stack** → **Add PyTorch 2.5.1+cu124**
+   - **Problem**: No torch/torchvision/torchaudio in requirements.txt; environment.yaml has outdated PyTorch 1.11.0 with CUDA 11.3
+   - **Solution**: Use PyTorch 2.5.1 with CUDA 12.4 build (closest stable to 12.8)
+
+### 3. **PyTorch-Lightning 1.4.2** → **PyTorch-Lightning 2.1.0**
+   - **Problem**: Version 1.4.2 (from 2021) doesn't support PyTorch 2.x or CUDA 12.x
+   - **Solution**: Upgrade to 2.1.0 for compatibility with modern PyTorch
+
+### 4. **Transformers 4.29.2** → **Transformers 4.40.0**
+   - **Problem**: Older version may not work well with PyTorch 2.5+
+   - **Solution**: Update to 4.40.0 for better compatibility
+
+### 5. **Tokenizers 0.13.3** → **Tokenizers 0.19.1**
+   - **Problem**: Outdated version
+   - **Solution**: Update to match transformers version
+
+## Installation Steps:
+
+### Option 1: Install with pip (Recommended)
+
+```bash
+# First, install PyTorch with CUDA 12.4 (compatible with CUDA 12.8)
+pip install torch==2.5.1+cu124 torchvision==0.20.1+cu124 torchaudio==2.5.1+cu124 --index-url https://download.pytorch.org/whl/cu124
+
+# Then install other requirements
+pip install -r requirements_cu128.txt --extra-index-url https://download.pytorch.org/whl/cu124
+```
+
+### Option 2: If you need CUDA 13.0 compatibility (your system shows CUDA 13.0)
+
+Since your system shows CUDA 13.0, you might want to use:
+
+```bash
+# For CUDA 13.0+
+pip install torch torchvision torchaudio  # Latest stable with CUDA 12.x support
+pip install triton  # Latest stable
+pip install -r requirements_cu128.txt
+```
+
+### Option 3: Docker (Most Reliable)
+
+Based on your project structure, use a pre-built Docker image:
+
+```bash
+# Use NGC PyTorch container with CUDA 12.x
+docker pull nvcr.io/nvidia/pytorch:25.01-py3
+docker run -it --gpus all --ipc=host -v /home/jifu/med_mnt:/workspace nvcr.io/nvidia/pytorch:25.01-py3
+```
+
+## Code Changes Required:
+
+### 1. Update main.py (if needed)
+The code already uses standard PyTorch APIs, so minimal changes needed:
+- `import torch` - compatible
+- `import torchvision` - compatible
+- `pytorch_lightning` - may need minor API updates
+
+### 2. Check PyTorch Lightning API Changes
+
+Some changes from 1.4.2 to 2.1.0:
+```python
+# Old (1.4.2):
+from pytorch_lightning.plugins import DDPPlugin
+
+# New (2.1.0+):
+from pytorch_lightning.strategies import DDPStrategy
+# And update Trainer:
+# trainer = Trainer(..., strategy='ddp')
+```
+
+## Verification:
+
+After installation, verify:
+
+```bash
+python -c "import torch; print(f'PyTorch: {torch.__version__}'); print(f'CUDA available: {torch.cuda.is_available()}'); print(f'CUDA version: {torch.version.cuda}')"
+python -c "import triton; print(f'Triton: {triton.__version__}')"
+```
+
+## Notes:
+
+1. **CUDA 12.4 vs 12.8**: PyTorch doesn't have official builds for every CUDA minor version. The CUDA 12.4 build is forward-compatible with CUDA 12.8 and 13.0.
+
+2. **Triton**: Triton 3.1.0 is designed to work with PyTorch 2.5+ and CUDA 12.x, resolving the main compilation issues.
+
+3. **MKL packages**: mkl_fft, mkl_random, mkl-service are Intel-specific. On some systems, you might need to install them via conda or skip them.
+
+4. **Project-specific changes**: The stable_diffusion code uses standard PyTorch APIs, so it should work without modification. Test thoroughly after upgrade.

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/LICENSE

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+Copyright 2023 Timothy Brooks, Aleksander Holynski, Alexei A. Efros
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+Portions of code and models (such as pretrained checkpoints, which are fine-tuned starting from released Stable Diffusion checkpoints) are derived from the Stable Diffusion codebase (https://github.com/CompVis/stable-diffusion). Further restrictions may apply. Please consult the Stable Diffusion license `stable_diffusion/LICENSE`. Modified code is denoted as such in comments at the start of each file. 

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/README.md

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+# InstructPix2Pix: Learning to Follow Image Editing Instructions
+### [Project Page](https://www.timothybrooks.com/instruct-pix2pix/) | [Paper](https://arxiv.org/abs/2211.09800) | [Data](http://instruct-pix2pix.eecs.berkeley.edu/)
+PyTorch implementation of InstructPix2Pix, an instruction-based image editing model, based on the original [CompVis/stable_diffusion](https://github.com/CompVis/stable-diffusion) repo. <br>
+
+[InstructPix2Pix: Learning to Follow Image Editing Instructions](https://www.timothybrooks.com/instruct-pix2pix/)  
+ [Tim Brooks](https://www.timothybrooks.com/)\*,
+ [Aleksander Holynski](https://holynski.org/)\*,
+ [Alexei A. Efros](https://people.eecs.berkeley.edu/~efros/) <br>
+ UC Berkeley <br>
+  \*denotes equal contribution  
+  
+  <img src='https://instruct-pix2pix.timothybrooks.com/teaser.jpg'/>
+
+## TL;DR: quickstart 
+
+Follow the instructions below to download and run InstructPix2Pix on your own images. These instructions have been tested on a GPU with >18GB VRAM. If you don't have a GPU, you may need to change the default configuration, or check out [other ways of using the model](https://github.com/timothybrooks/instruct-pix2pix#other-ways-of-using-instructpix2pix). 
+
+### Set up a conda environment, and download a pretrained model:
+```
+conda env create -f environment.yaml
+conda activate ip2p
+bash scripts/download_checkpoints.sh
+```
+
+### Edit a single image:
+```
+python edit_cli.py --input imgs/example.jpg --output imgs/output.jpg --edit "turn him into a cyborg"
+
+# Optionally, you can specify parameters to tune your result:
+# python edit_cli.py --steps 100 --resolution 512 --seed 1371 --cfg-text 7.5 --cfg-image 1.2 --input imgs/example.jpg --output imgs/output.jpg --edit "turn him into a cyborg"
+```
+
+### Or launch your own interactive editing Gradio app:
+```
+python edit_app.py 
+```
+![Edit app](https://github.com/timothybrooks/instruct-pix2pix/blob/main/imgs/edit_app.jpg?raw=true)
+
+_(For advice on how to get the best results by tuning parameters, see the [Tips](https://github.com/timothybrooks/instruct-pix2pix#tips) section)._
+
+## Setup
+
+Install all dependencies with:
+```
+conda env create -f environment.yaml
+```
+
+Download the pretrained models by running:
+```
+bash scripts/download_checkpoints.sh
+```
+
+## Generated Dataset
+
+Our image editing model is trained on a generated dataset consisting of 454,445 examples. Each example contains (1) an input image, (2) an editing instruction, and (3) an output edited image. We provide two versions of the dataset, one in which each pair of edited images is generated 100 times, and the best examples are chosen based on CLIP metrics (Section 3.1.2 in the paper) (`clip-filtered-dataset`), and one in which examples are randomly chosen (`random-sample-dataset`).
+
+For the released version of this dataset, we've additionally filtered prompts and images for NSFW content. After NSFW filtering, the GPT-3 generated dataset contains 451,990 examples. The final image-pair datasets contain:
+
+|  | # of image editing examples | Dataset size |
+|--|-----------------------|----------------------- |
+| `random-sample-dataset` |451990|727GB|
+|  `clip-filtered-dataset` |313010|436GB|
+
+To download one of these datasets, along with the entire NSFW-filtered text data, run the following command with the appropriate dataset name:
+
+```
+bash scripts/download_data.sh clip-filtered-dataset
+```
+
+
+## Training InstructPix2Pix
+
+InstructPix2Pix is trained by fine-tuning from an initial StableDiffusion checkpoint. The first step is to download a Stable Diffusion checkpoint. For our trained models, we used the v1.5 checkpoint as the starting point. To download the same ones we used, you can run the following script:
+```
+bash scripts/download_pretrained_sd.sh
+```
+If you'd like to use a different checkpoint, point to it in the config file `configs/train.yaml`, on line 8, after `ckpt_path:`. 
+
+Next, we need to change the config to point to our downloaded (or generated) dataset. If you're using the `clip-filtered-dataset` from above, you can skip this. Otherwise, you may need to edit lines 85 and 94 of the config (`data.params.train.params.path`, `data.params.validation.params.path`). 
+
+Finally, start a training job with the following command:
+
+```
+python main.py --name default --base configs/train.yaml --train --gpus 0,1,2,3,4,5,6,7
+```
+
+
+## Creating your own dataset
+
+Our generated dataset of paired images and editing instructions is made in two phases: First, we use GPT-3 to generate text triplets: (a) a caption describing an image, (b) an edit instruction, (c) a caption describing the image after the edit. Then, we turn pairs of captions (before/after the edit) into pairs of images using Stable Diffusion and Prompt-to-Prompt.
+
+### (1) Generate a dataset of captions and instructions
+
+We provide our generated dataset of captions and edit instructions [here](https://instruct-pix2pix.eecs.berkeley.edu/gpt-generated-prompts.jsonl). If you plan to use our captions+instructions, skip to step (2). Otherwise, if you would like to create your own text dataset, please follow steps (1.1-1.3) below. Note that generating very large datasets using GPT-3 can be expensive.
+
+#### (1.1) Manually write a dataset of instructions and captions
+
+The first step of the process is fine-tuning GPT-3. To do this, we made a dataset of 700 examples broadly covering of edits that we might want our model to be able to perform. Our examples are available [here](https://instruct-pix2pix.eecs.berkeley.edu/human-written-prompts.jsonl). These should be diverse and cover a wide range of possible captions and types of edits. Ideally, they should avoid duplication or significant overlap of captions and instructions. It is also important to be mindful of limitations of Stable Diffusion and Prompt-to-Prompt in writing these examples, such as inability to perform large spatial transformations (e.g., moving the camera, zooming in, swapping object locations). 
+
+Input prompts should closely match the distribution of input prompts used to generate the larger dataset. We sampled the 700 input prompts from the _LAION Improved Aesthetics 6.5+_ dataset and also use this dataset for generating examples. We found this dataset is quite noisy (many of the captions are overly long and contain irrelevant text). For this reason, we also considered MSCOCO and LAION-COCO datasets, but ultimately chose _LAION Improved Aesthetics 6.5+_ due to its diversity of content, proper nouns, and artistic mediums. If you choose to use another dataset or combination of datasets as input to GPT-3 when generating examples, we recommend you sample the input prompts from the same distribution when manually writing training examples.
+
+#### (1.2) Finetune GPT-3
+
+The next step is to finetune a large language model on the manually written instructions/outputs to generate edit instructions and edited caption from a new input caption. For this, we finetune GPT-3's Davinci model via the OpenAI API, although other language models could be used.
+
+To prepare training data for GPT-3, one must first create an OpenAI developer account to access the needed APIs, and [set up the API keys on your local device](https://beta.openai.com/docs/api-reference/introduction). Also, run the `prompts/prepare_for_gpt.py` script, which forms the prompts into the correct format by concatenating instructions and captions and adding delimiters and stop sequences.
+
+```bash
+python dataset_creation/prepare_for_gpt.py --input-path data/human-written-prompts.jsonl --output-path data/human-written-prompts-for-gpt.jsonl
+```
+
+Next, finetune GPT-3 via the OpenAI CLI. We provide an example below, although please refer to OpenAI's official documentation for this, as best practices may change. We trained the Davinci model for a single epoch. You can experiment with smaller less expensive GPT-3 variants or with open source language models, although this may negatively affect performance.
+
+```bash
+openai api fine_tunes.create -t data/human-written-prompts-for-gpt.jsonl -m davinci --n_epochs 1 --suffix "instruct-pix2pix"
+```
+
+You can test out the finetuned GPT-3 model by launching the provided Gradio app:
+
+```bash
+python prompt_app.py --openai-api-key OPENAI_KEY --openai-model OPENAI_MODEL_NAME
+```
+
+![Prompt app](https://github.com/timothybrooks/instruct-pix2pix/blob/main/imgs/prompt_app.jpg?raw=true)
+
+#### (1.3) Generate a large dataset of captions and instructions
+
+We now use the finetuned GPT-3 model to generate a large dataset. Our dataset cost thousands of dollars to create. See `prompts/gen_instructions_and_captions.py` for the script which generates these examples. We recommend first generating a small number of examples (by setting a low value of `--num-samples`) and gradually increasing the scale to ensure the results are working as desired before increasing scale.
+
+```bash
+python dataset_creation/generate_txt_dataset.py --openai-api-key OPENAI_KEY --openai-model OPENAI_MODEL_NAME
+```
+
+If you are generating at a very large scale (e.g., 100K+), it will be noteably faster to generate the dataset with multiple processes running in parallel. This can be accomplished by setting `--partitions=N` to a higher number and running multiple processes, setting each `--partition` to the corresponding value.
+
+```bash
+python dataset_creation/generate_txt_dataset.py --openai-api-key OPENAI_KEY --openai-model OPENAI_MODEL_NAME --partitions=10 --partition=0
+```
+
+### (2) Turn paired captions into paired images
+
+The next step is to turn pairs of text captions into pairs of images. For this, we need to copy some pre-trained Stable Diffusion checkpoints to `stable_diffusion/models/ldm/stable-diffusion-v1/`. You may have already done this if you followed the instructions above for training with our provided data, but if not, you can do this by running:
+
+```bash
+bash scripts/download_pretrained_sd.sh
+```
+
+For our model, we used [checkpoint v1.5](https://huggingface.co/runwayml/stable-diffusion-v1-5/blob/main/v1-5-pruned.ckpt), and the [new autoencoder](https://huggingface.co/stabilityai/sd-vae-ft-mse-original/resolve/main/vae-ft-mse-840000-ema-pruned.ckpt), but other models may work as well. If you choose to use other models, make sure to change point to the corresponding checkpoints by passing in the `--ckpt` and `--vae-ckpt` arguments. Once all checkpoints have been downloaded, we can generate the dataset with the following command:
+
+```
+python dataset_creation/generate_img_dataset.py --out_dir data/instruct-pix2pix-dataset-000 --prompts_file path/to/generated_prompts.jsonl
+```
+
+This command operates on a single GPU (typically a V100 or A100). To parallelize over many GPUs/machines, set `--n-partitions` to the total number of parallel jobs and `--partition` to the index of each job.
+
+```
+python dataset_creation/generate_img_dataset.py --out_dir data/instruct-pix2pix-dataset-000 --prompts_file path/to/generated_prompts.jsonl --n-partitions 100 --partition 0
+```
+
+The default parameters match that of our dataset, although in practice you can use a smaller number of steps (e.g., `--steps=25`) to generate high quality data faster. By default, we generate 100 samples per prompt and use CLIP filtering to keep a max of 4 per prompt. You can experiment with fewer samples by setting `--n-samples`. The command below turns off CLIP filtering entirely and is therefore faster:
+
+```
+python dataset_creation/generate_img_dataset.py --out_dir data/instruct-pix2pix-dataset-000 --prompts_file path/to/generated_prompts.jsonl --n-samples 4 --clip-threshold 0 --clip-dir-threshold 0 --clip-img-threshold 0 --n-partitions 100 --partition 0
+```
+
+After generating all of the dataset examples, run the following command below to create a list of the examples. This is needed for the dataset onject to efficiently be able to sample examples without needing to iterate over the entire dataset directory at the start of each training run.
+
+```
+python dataset_creation/prepare_dataset.py data/instruct-pix2pix-dataset-000
+```
+
+## Evaluation
+
+To generate plots like the ones in Figures 8 and 10 in the paper, run the following command:
+
+```
+python metrics/compute_metrics.py --ckpt /path/to/your/model.ckpt
+```
+
+## Tips
+
+If you're not getting the quality result you want, there may be a few reasons:
+1. **Is the image not changing enough?** Your Image CFG weight may be too high. This value dictates how similar the output should be to the input. It's possible your edit requires larger changes from the original image, and your Image CFG weight isn't allowing that. Alternatively, your Text CFG weight may be too low. This value dictates how much to listen to the text instruction. The default Image CFG of 1.5 and Text CFG of 7.5 are a good starting point, but aren't necessarily optimal for each edit. Try:
+    * Decreasing the Image CFG weight, or
+    * Increasing the Text CFG weight, or
+2. Conversely, **is the image changing too much**, such that the details in the original image aren't preserved? Try:
+    * Increasing the Image CFG weight, or
+    * Decreasing the Text CFG weight
+3. Try generating results with different random seeds by setting "Randomize Seed" and running generation multiple times. You can also try setting "Randomize CFG" to sample new Text CFG and Image CFG values each time.
+4. Rephrasing the instruction sometimes improves results (e.g., "turn him into a dog" vs. "make him a dog" vs. "as a dog").
+5. Increasing the number of steps sometimes improves results.
+6. Do faces look weird? The Stable Diffusion autoencoder has a hard time with faces that are small in the image. Try cropping the image so the face takes up a larger portion of the frame.
+
+## Comments
+
+- Our codebase is based on the [Stable Diffusion codebase](https://github.com/CompVis/stable-diffusion).
+
+## BibTeX
+
+```
+@article{brooks2022instructpix2pix,
+  title={InstructPix2Pix: Learning to Follow Image Editing Instructions},
+  author={Brooks, Tim and Holynski, Aleksander and Efros, Alexei A},
+  journal={arXiv preprint arXiv:2211.09800},
+  year={2022}
+}
+```
+## Other ways of using InstructPix2Pix
+
+### InstructPix2Pix on [HuggingFace](https://huggingface.co/spaces/timbrooks/instruct-pix2pix):
+> A browser-based version of the demo is available as a [HuggingFace space](https://huggingface.co/spaces/timbrooks/instruct-pix2pix). For this version, you only need a browser, a picture you want to edit, and an instruction! Note that this is a shared online demo, and processing time may be slower during peak utilization. 
+
+### InstructPix2Pix on [Replicate](https://replicate.com/timothybrooks/instruct-pix2pix):
+> Replicate provides a production-ready cloud API for running the InstructPix2Pix model. You can run the model from any environment using a simple API call with cURL, Python, JavaScript, or your language of choice. Replicate also provides a web interface for running the model and sharing predictions.
+
+### InstructPix2Pix in [Imaginairy](https://github.com/brycedrennan/imaginAIry#-edit-images-with-instructions-alone-by-instructpix2pix):
+> Imaginairy offers another way of easily installing InstructPix2Pix with a single command. It can run on devices without GPUs (like a Macbook!). 
+> ```bash
+> pip install imaginairy --upgrade
+> aimg edit any-image.jpg --gif "turn him into a cyborg" 
+> ```
+> It also offers an easy way to perform a bunch of edits on an image, and can save edits out to an animated GIF:
+> ```
+> aimg edit --gif --surprise-me pearl-earring.jpg 
+> ```
+> <img src="https://raw.githubusercontent.com/brycedrennan/imaginAIry/7c05c3aae2740278978c5e84962b826e58201bac/assets/girl_with_a_pearl_earring_suprise.gif" width="512">
+
+### InstructPix2Pix in [🧨 Diffusers](https://github.com/huggingface/diffusers):
+
+> InstructPix2Pix in Diffusers is a bit more optimized, so it may be faster and more suitable for GPUs with less memory. Below are instructions for installing the library and editing an image: 
+> 1. Install diffusers and relevant dependencies:
+>
+> ```bash
+> pip install transformers accelerate torch
+>
+> pip install git+https://github.com/huggingface/diffusers.git
+> ```
+> 
+> 2. Load the model and edit the image:
+>
+> ```python
+> 
+> import torch
+> from diffusers import StableDiffusionInstructPix2PixPipeline, EulerAncestralDiscreteScheduler
+> 
+> model_id = "timbrooks/instruct-pix2pix"
+> pipe = StableDiffusionInstructPix2PixPipeline.from_pretrained(model_id, torch_dtype=torch.float16, safety_checker=None)
+> pipe.to("cuda")
+> pipe.scheduler = EulerAncestralDiscreteScheduler.from_config(pipe.scheduler.config)
+> # `image` is an RGB PIL.Image
+> images = pipe("turn him into cyborg", image=image).images
+> images[0]
+> ```
+> 
+> For more information, check the docs [here](https://huggingface.co/docs/diffusers/main/en/api/pipelines/stable_diffusion/pix2pix).
+# CT_Mask_Edit
+# CT_Mask_Edit
+# CT_Mask_Edit
+# CT_Mask_Edit
+# CT_Mask_Edit

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/checkpoints/instruct-pix2pix-00-22000.ckpt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ffd280ddcfc8234e4d28b93641cb83169cebcb4d70998df9ee2eabb4d705374a
+size 7703927910

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/config.sh

@@ -0,0 +1,6 @@
+
+
+
+python main.py --name debug --base configs/train.yaml --train --gpus 0,
+
+python main.py --name debug --base configs/train_3d.yaml --train --gpus 0,

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/generate.yaml

@@ -0,0 +1,99 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit.LatentDiffusion
+  params:
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    # image_size: 64
+    # image_size: 32
+    image_size: 16
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: true
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 128
+    num_workers: 1
+    wrap: false
+    validation:
+      target: edit_dataset.EditDataset
+      params:
+        path: data/clip-filtered-dataset
+        cache_dir:  data/
+        cache_name: data_10k
+        split: val
+        min_text_sim: 0.2
+        min_image_sim: 0.75
+        min_direction_sim: 0.2
+        max_samples_per_prompt: 1
+        min_resize_res: 512
+        max_resize_res: 512
+        crop_res: 512
+        output_as_edit: False
+        real_input: True

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/infer.yaml

@@ -0,0 +1,108 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit.LatentDiffusion
+  params:
+    ckpt_path: stable_diffusion/models/ldm/stable-diffusion-v1/v1-5-pruned-emaonly.ckpt
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 64
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 16
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train.CTReportDataset
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference.CTReportDatasetinfer
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+        labels: '/sd/shuhan/CT-RATE/multi_abnormality_labels/valid_predicted_labels.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 10000

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/infer3d.yaml

@@ -0,0 +1,110 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit_3d.LatentDiffusion
+  params:
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 32
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+    ckpt_path: /sd/qichen/full_ct_gen/instruct-pix2pix-BioMedCLIP-concat-newdata/logs/train_instructpix2pix_2d_random/checkpoints/epoch=000091.ckpt
+    load_only_unet: True
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel_pseudo3D.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 16
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train.CTReportDataset
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference.CTReportDatasetinfer
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+        labels: '/sd/shuhan/CT-RATE/multi_abnormality_labels/valid_predicted_labels.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 10000

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/train.yaml

@@ -0,0 +1,107 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit.LatentDiffusion
+  params:
+    ckpt_path: stable_diffusion/models/ldm/stable-diffusion-v1/v1-5-pruned-emaonly.ckpt
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 64
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 16
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train.CTReportDataset
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference.CTReportDatasetinfer
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 10000

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/train_3d.yaml

@@ -0,0 +1,115 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit_3d.LatentDiffusion
+  params:
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 32
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+    ckpt_path: ./logs/train_train_instructpix2pix/checkpoints/epoch=001999.ckpt
+    load_only_unet: True
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel_pseudo3D.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 1
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train_3d.CTReportDataset
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+        # data_folder: '/data/pike/jifu/data/dataset/train_fixed'
+        # csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference_3d.CTReportDatasetinfer
+      params:
+        data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+        labels: '/sd/shuhan/CT-RATE/multi_abnormality_labels/valid_predicted_labels.csv'
+        # data_folder: '/data/pike/jifu/data/dataset/valid_fixed'
+        # csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/valid_reports.csv'
+        # labels: '/data/pike/jifu/data/data_json/multi_abnormality_labels/valid_predicted_labels.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 4
+    precision: 16-mixed  # Enable mixed precision training (fp16)

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/train_3d_effusion.yaml

@@ -0,0 +1,115 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit_3d.LatentDiffusion
+  params:
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 32
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+    ckpt_path: ./logs/disease_checkpoints/effusion/epoch=001999.ckpt
+    load_only_unet: True
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel_pseudo3D.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 1
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train_3d.CTReportDataset
+      params:
+        # data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        # csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+        data_folder: '/data/pike/jifu/data/dataset/train_fixed'
+        csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference_3d.CTReportDatasetinfer
+      params:
+        # data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        # csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+        # labels: '/sd/shuhan/CT-RATE/multi_abnormality_labels/valid_predicted_labels.csv'
+        data_folder: '/data/pike/jifu/data/dataset/valid_fixed'
+        csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/valid_reports.csv'
+        labels: '/data/pike/jifu/data/data_json/multi_abnormality_labels/valid_predicted_labels.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 4
+    precision: 16-mixed  # Enable mixed precision training (fp16)

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/configs/train_3d_opacity.yaml

@@ -0,0 +1,115 @@
+# File modified by authors of InstructPix2Pix from original (https://github.com/CompVis/stable-diffusion).
+# See more details in LICENSE.
+
+model:
+  base_learning_rate: 1.0e-04
+  target: ldm.models.diffusion.ddpm_edit_3d.LatentDiffusion
+  params:
+    linear_start: 0.00085
+    linear_end: 0.0120
+    num_timesteps_cond: 1
+    log_every_t: 200
+    timesteps: 1000
+    first_stage_key: edited
+    cond_stage_key: edit
+    image_size: 32
+    channels: 4
+    cond_stage_trainable: false   # Note: different from the one we trained before
+    conditioning_key: hybrid
+    monitor: val/loss_simple_ema
+    scale_factor: 0.18215
+    use_ema: true
+    load_ema: false
+    ckpt_path: ./logs/disease_checkpoints/opacity/epoch=001959.ckpt
+    load_only_unet: True
+
+    scheduler_config: # 10000 warmup steps
+      target: ldm.lr_scheduler.LambdaLinearScheduler
+      params:
+        warm_up_steps: [ 0 ]
+        cycle_lengths: [ 10000000000000 ] # incredibly large number to prevent corner cases
+        f_start: [ 1.e-6 ]
+        f_max: [ 1. ]
+        f_min: [ 1. ]
+
+    unet_config:
+      target: ldm.modules.diffusionmodules.openaimodel_pseudo3D.UNetModel
+      params:
+        image_size: 32 # unused
+        in_channels: 8
+        out_channels: 4
+        model_channels: 320
+        attention_resolutions: [ 4, 2, 1 ]
+        num_res_blocks: 2
+        channel_mult: [ 1, 2, 4, 4 ]
+        num_heads: 8
+        use_spatial_transformer: True
+        transformer_depth: 1
+        context_dim: 768
+        use_checkpoint: True
+        legacy: False
+
+    first_stage_config:
+      target: ldm.models.autoencoder.AutoencoderKL
+      params:
+        embed_dim: 4
+        monitor: val/rec_loss
+        ddconfig:
+          double_z: true
+          z_channels: 4
+          resolution: 256
+          in_channels: 3
+          out_ch: 3
+          ch: 128
+          ch_mult:
+          - 1
+          - 2
+          - 4
+          - 4
+          num_res_blocks: 2
+          attn_resolutions: []
+          dropout: 0.0
+        lossconfig:
+          target: torch.nn.Identity
+
+    cond_stage_config:
+      target: ldm.modules.encoders.modules.FrozenBioMedCLIPEmbedder
+
+data:
+  target: main.DataModuleFromConfig
+  params:
+    batch_size: 1
+    num_workers: 8
+    train:
+      target: ldm.data.ct_clip_data_train_3d.CTReportDataset
+      params:
+        # data_folder: '/sd/shuhan/CT-RATE/dataset/train_fixed'
+        # csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/train_reports.csv'
+        data_folder: '/data/pike/jifu/data/dataset/train_fixed'
+        csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/train_reports.csv'
+
+    validation:
+      target: ldm.data.ct_clip_data_inference_3d.CTReportDatasetinfer
+      params:
+        # data_folder: '/sd/shuhan/CT-RATE/dataset/valid_fixed'
+        # csv_file: '/sd/shuhan/CT-RATE/radiology_text_reports/valid_reports.csv'
+        # labels: '/sd/shuhan/CT-RATE/multi_abnormality_labels/valid_predicted_labels.csv'
+        data_folder: '/data/pike/jifu/data/dataset/valid_fixed'
+        csv_file: '/data/pike/jifu/data/data_json/radiology_text_reports/valid_reports.csv'
+        labels: '/data/pike/jifu/data/data_json/multi_abnormality_labels/valid_predicted_labels.csv'
+
+lightning:
+  callbacks:
+    image_logger:
+      target: main.ImageLogger
+      params:
+        batch_frequency: 200000000000
+        max_images: 2
+        increase_log_steps: False
+
+  trainer:
+    max_epochs: 2000
+    benchmark: True
+    accumulate_grad_batches: 4
+    check_val_every_n_epoch: 4
+    precision: 16-mixed  # Enable mixed precision training (fp16)

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_train_single_prompt_effusion.json

@@ -0,0 +1,209 @@
+{"volume_path": "dataset/train_fixed/train_1438/train_1438_d/train_1438_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1438_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1438_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developed effusion measuring up to 13 mm in the deepest part of the right pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1753/train_1753_e/train_1753_e_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1753_e_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1753_e_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal effusion measuring approximately 8 mm at its deepest point in the right pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Thickening of the pleura adjacent to the effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1246/train_1246_c/train_1246_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1246_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1246_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Increase in the amount of pleural effusion in the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1246/train_1246_c/train_1246_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1246_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1246_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Decrease in the amount of pleural effusion in the left lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1405/train_1405_a/train_1405_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1405_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1405_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion up to 13 mm in the deepest part of the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1263/train_1263_b/train_1263_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1263_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1263_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1298/train_1298_a/train_1298_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1298_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1298_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2037/train_2037_b/train_2037_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2037_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2037_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2037/train_2037_b/train_2037_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2037_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2037_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 19 mm at its deepest point on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2037/train_2037_b/train_2037_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2037_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2037_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 9 mm at its deepest point on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2037/train_2037_b/train_2037_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2037_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2037_b_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion transitioned from a plastering appearance to an increased volume compared to the previous examination", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2333/train_2333_a/train_2333_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2333_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2333_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1593/train_1593_b/train_1593_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1593_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1593_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion persists without significant change", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2410/train_2410_b/train_2410_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2410_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2410_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developed minimal pleural effusion measuring approximately 15 mm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2410/train_2410_b/train_2410_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2410_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2410_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developed minimal pleural effusion measuring approximately 13 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1542/train_1542_a/train_1542_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1542_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1542_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending towards the fissure and locally loculated", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1542/train_1542_a/train_1542_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1542_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1542_a_1.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right, measuring 1.8 cm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1540/train_1540_a/train_1540_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1540_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1540_a_1.nii.gz", "disease_mask_channel": "9", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion in the right lung with adjacent passive atelectasis", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1933/train_1933_a/train_1933_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1933_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1933_a_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural thickening areas in the region of pleural extensions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2330/train_2330_a/train_2330_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2330_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2330_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Widespread calcified pleural plaques with a tendency to coalesce in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1897/train_1897_f/train_1897_f_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1897_f_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1897_f_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1717/train_1717_a/train_1717_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1717_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1717_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions measuring 13 mm on the right and 10 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1586/train_1586_a/train_1586_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1586_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1586_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the right hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1486/train_1486_b/train_1486_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1486_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1486_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion, more prominent on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1742/train_1742_a/train_1742_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1742_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1742_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1742/train_1742_b/train_1742_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1742_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1742_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Total resorption in the pleural effusion previously noted in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1511/train_1511_a/train_1511_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1511_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1511_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3675/train_3675_a/train_3675_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_3675_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_3675_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the deepest part of the right pleural area measuring up to 30 mm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3675/train_3675_a/train_3675_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_3675_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_3675_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the deepest part of the left pleural area measuring up to 60 mm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2899/train_2899_a/train_2899_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2899_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2899_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 28 mm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2899/train_2899_a/train_2899_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2899_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2899_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 17 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2719/train_2719_b/train_2719_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2719_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2719_b_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion, more prominent on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2965/train_2965_b/train_2965_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2965_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2965_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Right pleural effusion measuring 1.5 cm at its deepest part", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2965/train_2965_b/train_2965_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2965_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2965_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Left pleural effusion measuring 1.0 cm at its deepest part", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3666/train_3666_a/train_3666_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_3666_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_3666_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2986/train_2986_c/train_2986_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2986_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2986_c_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion in the posterobasal segment of the left lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3729/train_3729_a/train_3729_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_3729_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_3729_a_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3357/train_3357_b/train_3357_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_3357_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_3357_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3713/train_3713_d/train_3713_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_3713_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_3713_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the left hemithorax measuring up to 1.1 cm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3073/train_3073_b/train_3073_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_3073_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_3073_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Slightly increased free pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3073/train_3073_b/train_3073_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_3073_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_3073_b_1.nii.gz", "disease_mask_channel": "6", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly observed minimal pleural effusion in the fissure plane on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2719/train_2719_d/train_2719_d_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2719_d_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2719_d_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2886/train_2886_a/train_2886_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2886_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2886_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal free pleural effusion measuring 6 mm in thickness on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2719/train_2719_c/train_2719_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2719_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2719_c_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 10 mm in thickness on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2719/train_2719_c/train_2719_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2719_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2719_c_1.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 12 mm in thickness on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2942/train_2942_a/train_2942_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2942_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2942_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Right pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2769/train_2769_a/train_2769_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2769_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2769_a_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2718/train_2718_a/train_2718_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2718_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2718_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2860/train_2860_a/train_2860_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2860_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2860_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Moderate amount of effusion in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3610/train_3610_a/train_3610_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_3610_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_3610_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Widespread free pleural effusion measuring 6.8 cm in thickness on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_3610/train_3610_a/train_3610_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_3610_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_3610_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion partially extends into the fissure", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_2858/train_2858_a/train_2858_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2858_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2858_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Coarse plaque-like pleural thickening in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7259/train_7259_c/train_7259_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7259_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7259_c_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Large effusion measuring up to 10 cm in the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6455/train_6455_a/train_6455_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6455_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6455_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural thickening and fibrotic bands with coarse calcification in the right lower lobe, measuring approximately 1.8x1.6 cm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7552/train_7552_c/train_7552_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7552_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7552_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions measuring up to 18 mm on the right and 25 mm on the left at their deepest points", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7998/train_7998_a/train_7998_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7998_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7998_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion in both pleural spaces measuring up to 4.5 cm on the left at its deepest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5269/train_5269_b/train_5269_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5269_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5269_b_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developed minimal bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5444/train_5444_a/train_5444_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5444_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5444_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Subpleural calcified plaque in the left hemithorax measuring 33x13 mm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6279/train_6279_a/train_6279_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6279_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6279_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion reaching 10 mm in thickness in the thickest part of the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5546/train_5546_b/train_5546_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5546_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5546_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Mild pleural thickening in the right middle lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5571/train_5571_b/train_5571_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5571_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5571_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion, more prominent on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7903/train_7903_a/train_7903_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7903_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7903_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural calcifications with minimal associated soft tissue densities in the bilateral upper hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7901/train_7901_b/train_7901_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7901_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7901_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Calcified pleural thickenings up to 1 cm in the diaphragmatic pleura of the left lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5912/train_5912_a/train_5912_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5912_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5912_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Calcified pleural plaques in the right upper lobe apicoposterior segment", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5912/train_5912_a/train_5912_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5912_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5912_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Calcified pleural plaques in the right lower lobe superior segment", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6779/train_6779_f/train_6779_f_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6779_f_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6779_f_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions measuring 26 mm on the right and 29 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5915/train_5915_c/train_5915_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5915_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5915_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Moderate pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5915/train_5915_c/train_5915_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5915_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5915_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Small to moderate pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7978/train_7978_a/train_7978_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7978_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7978_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion on the right, measuring 3.0 cm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7978/train_7978_a/train_7978_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7978_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7978_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6345/train_6345_b/train_6345_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6345_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6345_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6488/train_6488_b/train_6488_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6488_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6488_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion measuring 4.4 cm at its widest part in the major fissure and adjacent to the superior segment of the right lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6488/train_6488_b/train_6488_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6488_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6488_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free effusion measuring 2.8 cm in the thickest part of the left hemithorax between the pleural leaves", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5428/train_5428_d/train_5428_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5428_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5428_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral free pleural effusion, 16 mm on the right, 30 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6583/train_6583_a/train_6583_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6583_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6583_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Mild pleural thickening at the basal level of the lower lobe of the left lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6165/train_6165_c/train_6165_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6165_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6165_c_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Increased pleural effusion measuring 32 mm in diameter on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6165/train_6165_c/train_6165_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6165_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6165_c_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Pleural effusion or thickening", "disease_findings": "Slightly increased pleural effusion measuring 11 mm in diameter on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6439/train_6439_c/train_6439_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6439_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6439_c_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the left lung, measuring up to 5 cm in diameter at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5529/train_5529_b/train_5529_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5529_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5529_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Stable pleural effusion in left lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6525/train_6525_a/train_6525_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6525_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6525_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Smear-like effusion in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7280/train_7280_c/train_7280_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7280_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7280_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7280/train_7280_c/train_7280_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7280_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7280_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending to the right lung apex in the supine position", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7563/train_7563_a/train_7563_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7563_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7563_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7491/train_7491_a/train_7491_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7491_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7491_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Mild bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8198/train_8198_b/train_8198_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8198_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8198_b_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal right pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7206/train_7206_b/train_7206_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7206_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7206_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural thickening at the lung bases bilaterally", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8216/train_8216_a/train_8216_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8216_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8216_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5822/train_5822_a/train_5822_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5822_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5822_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free pleural effusion in both pleural spaces measuring up to 1.3 cm at its deepest point on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8188/train_8188_a/train_8188_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8188_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8188_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7737/train_7737_a/train_7737_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7737_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7737_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5867/train_5867_a/train_5867_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5867_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5867_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring approximately 2.7 cm at the thickest part of the right hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5867/train_5867_a/train_5867_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5867_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5867_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring approximately 1 cm at the thickest part of the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6748/train_6748_a/train_6748_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6748_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6748_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion, more prominent on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6748/train_6748_a/train_6748_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6748_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6748_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 3.0 cm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5357/train_5357_b/train_5357_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5357_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5357_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal free effusion up to 15 mm in the deepest part of the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6902/train_6902_b/train_6902_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6902_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6902_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion, more prominent on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5759/train_5759_a/train_5759_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5759_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5759_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Calcified pleural plaques in both hemithoraces measuring up to 9 mm at the thickest point in the right costal pleura", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8103/train_8103_a/train_8103_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8103_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8103_a_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral mild pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5612/train_5612_a/train_5612_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5612_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5612_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "23 mm effusion in the deepest part of the right pleural area", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6799/train_6799_b/train_6799_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6799_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6799_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 15 mm on the right in the bilateral hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6786/train_6786_a/train_6786_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6786_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6786_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7543/train_7543_a/train_7543_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7543_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7543_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Nonspecific pleural thickening in the upper lobe of the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5985/train_5985_a/train_5985_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5985_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5985_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Focal increase in thickness at the level of the major fissure in the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5632/train_5632_b/train_5632_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5632_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5632_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developed bilateral pleural effusion, measuring 25 mm on the right at its deepest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8078/train_8078_a/train_8078_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8078_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8078_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion measuring 1.0 cm at its deepest point on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7142/train_7142_b/train_7142_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7142_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7142_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Focal thickening in the adjacent pleura", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8060/train_8060_a/train_8060_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8060_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8060_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free pleural effusion between bilateral pleural leaves measuring 19 mm on the right and 26 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5915/train_5915_a/train_5915_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5915_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5915_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free effusion up to 8 cm in the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5915/train_5915_a/train_5915_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5915_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5915_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free effusion up to 3 cm in the right pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5472/train_5472_a/train_5472_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5472_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5472_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 2.7 cm at its thickest part in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5472/train_5472_a/train_5472_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5472_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5472_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending into the fissure on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5668/train_5668_a/train_5668_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5668_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5668_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Small amount of bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5630/train_5630_a/train_5630_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5630_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5630_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Right pleural effusion measuring 54 mm at its thickest part", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7012/train_7012_a/train_7012_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7012_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7012_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "7 cm pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7012/train_7012_a/train_7012_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7012_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7012_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "9 mm pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7306/train_7306_a/train_7306_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7306_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7306_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Focal area of increased thickness in the major fissure of the left lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7107/train_7107_c/train_7107_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7107_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7107_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending to the apex of the left lung with the patient in the supine position", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7107/train_7107_c/train_7107_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7107_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7107_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7107/train_7107_c/train_7107_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7107_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7107_c_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Hyperdense appearances within the effusion in the right hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7402/train_7402_a/train_7402_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7402_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7402_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6240/train_6240_a/train_6240_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6240_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6240_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Subcentimeter pleural effusion in the posterobasal segment of the lower lobe of the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8070/train_8070_b/train_8070_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8070_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8070_b_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Stable right pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7118/train_7118_a/train_7118_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7118_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7118_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal bilateral pleural effusion measuring up to 10 mm at its deepest point on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring 1.5 cm on the right at its deepest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8125/train_8125_e/train_8125_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8125_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8125_e_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Marked regression of bilateral pleural effusion observed in the previous examination", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8125/train_8125_e/train_8125_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8125_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8125_e_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Small amount of effusion persists in the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7461/train_7461_c/train_7461_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7461_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7461_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions have regressed", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5818/train_5818_a/train_5818_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5818_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5818_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 7.0 cm at its thickest point on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7804/train_7804_a/train_7804_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7804_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7804_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free effusion in the right pleural space up to 35 mm in the deepest part", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7804/train_7804_a/train_7804_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7804_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7804_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free effusion in the left pleural space up to 26 mm in the deepest part", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7737/train_7737_b/train_7737_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7737_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7737_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7280/train_7280_b/train_7280_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7280_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7280_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7280/train_7280_b/train_7280_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7280_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7280_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending to the apex of the lung in the supine position", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7280/train_7280_b/train_7280_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7280_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7280_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion measuring 50 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8003/train_8003_a/train_8003_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8003_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8003_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Moderate pleural effusion in both hemithoraces", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8003/train_8003_a/train_8003_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8003_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8003_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8056/train_8056_b/train_8056_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_8056_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_8056_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion up to a depth of approximately 36 mm in the right pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_5548/train_5548_b/train_5548_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5548_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5548_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Associated pleural thickening at the apices of both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8193/train_8193_a/train_8193_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8193_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8193_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 3.1 cm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_8193/train_8193_a/train_8193_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_8193_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_8193_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 1.5 cm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_6039/train_6039_b/train_6039_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6039_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6039_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal effusion measuring 8 mm in diameter in the deepest part of the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7349/train_7349_a/train_7349_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7349_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7349_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Calcified plaque-like thickening in both pleura", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7139/train_7139_a/train_7139_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7139_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7139_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Small amount of effusion in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11408/train_11408_a/train_11408_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11408_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11408_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural thickening", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12005/train_12005_a/train_12005_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12005_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12005_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Right-sided pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12005/train_12005_a/train_12005_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12005_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12005_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal thickening of the pleura adjacent to the right-sided effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12005/train_12005_a/train_12005_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12005_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12005_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Loculated appearance of the pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12005/train_12005_a/train_12005_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12005_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12005_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 11.0 cm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10043/train_10043_b/train_10043_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10043_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10043_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10013/train_10013_a/train_10013_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10013_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10013_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal effusion in the pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12699/train_12699_c/train_12699_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12699_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12699_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion diameter near the left ventricle measures 1.5 cm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10492/train_10492_a/train_10492_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10492_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10492_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring approximately 2.2 cm in thickness in the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10657/train_10657_b/train_10657_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10657_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10657_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "New smear-like pleural effusion in both hemithoraces", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11844/train_11844_a/train_11844_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11844_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11844_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Slight increase in pleural thickness and irregularities in the apical segments of the upper lobes", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12780/train_12780_a/train_12780_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12780_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12780_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions entering the major fissure on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12780/train_12780_a/train_12780_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12780_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12780_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 4.4 cm in the thickest part of the right hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12780/train_12780_a/train_12780_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12780_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12780_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 1.8 cm in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12149/train_12149_a/train_12149_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12149_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12149_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring approximately 45 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10253/train_10253_b/train_10253_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10253_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10253_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring 3.3 cm at its thickest point on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11831/train_11831_a/train_11831_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11831_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11831_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11831/train_11831_a/train_11831_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11831_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11831_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion extending to the level of the upper lobes of the lungs in the supine position", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11831/train_11831_a/train_11831_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11831_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11831_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion measuring approximately 4.5 cm on the right at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11831/train_11831_a/train_11831_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11831_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11831_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Effusion extending into the right fissure", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11539/train_11539_a/train_11539_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11539_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11539_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Increased pleural effusion bilaterally, measuring up to 108 mm on the right and 60 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12588/train_12588_b/train_12588_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12588_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12588_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in both hemithoraces", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12588/train_12588_b/train_12588_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12588_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12588_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion thickness approximately 4.5 cm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12588/train_12588_b/train_12588_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12588_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12588_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion thickness approximately 1.5 cm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11395/train_11395_a/train_11395_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11395_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11395_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion approximately 2 cm in the left lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11995/train_11995_a/train_11995_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11995_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11995_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Increase in pleural thickness, including calcification, adjacent to the consolidation area", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11536/train_11536_a/train_11536_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11536_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11536_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion with a thickness of 3 cm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11536/train_11536_a/train_11536_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11536_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11536_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion with a thickness of 2 cm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10924/train_10924_a/train_10924_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10924_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10924_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion measuring 5 mm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12769/train_12769_a/train_12769_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12769_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12769_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Areas of pleural thickening with peripheral calcifications in both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12769/train_12769_a/train_12769_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12769_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12769_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural thickening most prominent in the anterior and lateral upper lobe of the right lung, largest measuring 60x10 mm", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11948/train_11948_b/train_11948_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11948_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11948_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral minimal pleural effusion, more prominent on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10003/train_10003_a/train_10003_a_3.nii.gz", "organ_mask": "organ_mask_whole/train/train_10003_a_3.nii.gz", "disease_mask": "seg_rxg_smooth/train_10003_a_3.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Newly developing pleural effusion in the posterobasal sections of both lungs", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10003/train_10003_a/train_10003_a_3.nii.gz", "organ_mask": "organ_mask_whole/train/train_10003_a_3.nii.gz", "disease_mask": "seg_rxg_smooth/train_10003_a_3.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion thickness reaches 1.5 cm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10691/train_10691_a/train_10691_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10691_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10691_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Large pleural effusion on the left with an attenuation of 15 HU", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10926/train_10926_a/train_10926_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10926_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10926_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion with a depth of 15 mm on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_10926/train_10926_a/train_10926_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10926_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10926_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion with a depth of 10 mm on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12699/train_12699_b/train_12699_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12699_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12699_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11480/train_11480_c/train_11480_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11480_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11480_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12964/train_12964_b/train_12964_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12964_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12964_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions persist without significant change in volume", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11184/train_11184_c/train_11184_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11184_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11184_c_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Free pleural effusion observed in both pleural spaces, with the deepest part on the right measuring 25 mm, extending to the apex and fissure in the patient's lying position", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12957/train_12957_a/train_12957_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12957_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12957_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11438/train_11438_a/train_11438_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11438_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11438_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion in the right hemithorax, 1.5 cm thick", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13790/train_13790_a/train_13790_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13790_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13790_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13660/train_13660_b/train_13660_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13660_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13660_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion measuring 30 mm in depth in the right pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_317/train_317_d/train_317_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_317_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_317_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Stable amount of bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_263/train_263_h/train_263_h_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_263_h_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_263_h_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion bilaterally", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_341/train_341_a/train_341_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_341_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_341_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_186/train_186_a/train_186_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_186_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_186_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Loculated pleural effusions with Hounsfield Unit measurements approximately 4 to 12", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_186/train_186_a/train_186_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_186_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_186_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Pleural effusion or thickening", "disease_findings": "Localized pleural effusion in the left hemithorax", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_84/train_84_a/train_84_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_84_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_84_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Massive pleural effusion on the right side", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_317/train_317_b/train_317_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_317_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_317_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral mild pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_389/train_389_a/train_389_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_389_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_389_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Small right pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_484/train_484_a/train_484_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_484_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_484_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_484/train_484_a/train_484_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_484_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_484_a_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Pleural effusion or thickening", "disease_findings": "Right pleural effusion measuring 10 mm in depth", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_484/train_484_a/train_484_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_484_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_484_a_2.nii.gz", "disease_mask_channel": "7", "disease_label": "Pleural effusion or thickening", "disease_findings": "Left pleural effusion measuring 15 mm in depth", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_527/train_527_b/train_527_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_527_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_527_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Thin layer of pleural effusion in the right lung", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_412/train_412_a/train_412_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_412_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_412_a_2.nii.gz", "disease_mask_channel": "11", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal pleural effusion on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_506/train_506_a/train_506_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_506_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_506_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Associated focal pleural thickening in the right upper lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_877/train_877_a/train_877_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_877_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_877_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Thickening of the pleura with calcified foci", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_877/train_877_a/train_877_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_877_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_877_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Nodular thickening at the major fissure, measuring 2.5 cm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1023/train_1023_a/train_1023_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1023_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1023_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Subcentimeter effusion in the left pleural space", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_972/train_972_a/train_972_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_972_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_972_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Nodular pleural thickening in the apical segment of the upper lobe of the right lung posteriorly", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_valid_single_prompt_atelectasis+opacity.json

@@ -0,0 +1,137 @@
+{"volume_path": "dataset/train_fixed/train_13082/train_13082_a/train_13082_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13082_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13082_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Focal consolidative density at the paramediastinal level of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13591/train_13591_a/train_13591_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13591_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13591_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes in the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13035/train_13035_a/train_13035_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13035_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13035_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectasis in the bilateral lower lobe posterobasal segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13035/train_13035_a/train_13035_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13035_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13035_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Dependent density increases in the bilateral lower lobe posterobasal segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13177/train_13177_a/train_13177_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13177_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13177_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes causing mild structural distortion in the left lung inferior lingular segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Extensive consolidation areas in all segments of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation areas showing more confluence", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13256/train_13256_b/train_13256_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13256_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13256_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of consolidation in all segments of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13119/train_13119_c/train_13119_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13119_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13119_c_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13492/train_13492_b/train_13492_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13492_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13492_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of consolidation in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13075/train_13075_a/train_13075_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13075_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13075_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes at the basal levels of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Focal consolidations in the peripheral subpleural areas of the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Nodular consolidations in the basal segments of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13292/train_13292_a/train_13292_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13292_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13292_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in both lungs adjacent to the pleural effusion", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Newly emerged consolidation area in the mediobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of pneumonic consolidation with air bronchograms in the middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of pneumonic consolidation with air bronchograms in the lower lobes of both lungs, more prominently on the right", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the lung adjacent to the pleural effusion in the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Atelectasis, consolidation", "disease_findings": "Locally consolidated lung segments in both lungs, most prominently in the upper lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Cystic areas within the consolidated lung segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_240/valid_240_a/valid_240_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_240_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_240_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Large area of consolidation with irregular margins in the left lung hilum", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6510/train_6510_a/train_6510_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6510_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6510_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Patchy consolidations in the basal segments of the lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6510/train_6510_a/train_6510_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6510_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6510_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Patchy consolidations in the peripheral lung parenchyma", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10983/train_10983_a/train_10983_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10983_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10983_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes at the apical levels of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_a/train_2163_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7569/train_7569_d/train_7569_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7569_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7569_d_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Central and peripheral consolidations, particularly in the upper lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7569/train_7569_d/train_7569_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7569_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7569_d_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_682/train_682_a/train_682_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_682_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_682_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation with air bronchograms in the superior-posterior basal segments of the lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5231/train_5231_a/train_5231_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5231_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5231_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Peripheral and central consolidations in the upper and lower lobes of both lungs and the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_982/train_982_a/train_982_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_982_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_982_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Bilateral subpleural consolidations", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Multilobar consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Peripheral consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subpleural consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Predominantly dorsal consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7250/train_7250_i/train_7250_i_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7250_i_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7250_i_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Localized atelectasis in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the superior segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the posterobasal segment of the left lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Recent consolidations in the superior segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Atelectasis, consolidation", "disease_findings": "Recent consolidations in the posterobasal segment of the left lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis adjacent to the effusion in both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5211/train_5211_a/train_5211_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5211_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5211_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild dependent atelectasis in the posterior lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5483/train_5483_a/train_5483_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5483_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5483_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional areas of atelectasis in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring in the left upper lobe inferior lingular segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring more prominently in the basal segments of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_177/valid_177_a/valid_177_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_177_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_177_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional consolidations in the lower lobes and peripheral regions of the lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Nodular consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of increased density in air bronchograms", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11150/train_11150_b/train_11150_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11150_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11150_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of subsegmental atelectasis in the right lung middle lobe medial segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11150/train_11150_b/train_11150_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11150_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11150_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of subsegmental atelectasis in the left lung upper lobe lingular segment inferior subsegment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_2977/train_2977_a/train_2977_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2977_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2977_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1441/train_1441_a/train_1441_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1441_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1441_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectasis in the inferior segment of the left lung lingula", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11480/train_11480_c/train_11480_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11480_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11480_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Right lung completely atelectatic", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6551/train_6551_a/train_6551_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6551_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6551_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Passive atelectatic changes in the medial segment of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6551/train_6551_a/train_6551_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6551_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6551_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectatic changes in the inferior lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11967/train_11967_a/train_11967_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11967_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11967_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectatic changes in the paracardiac areas of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11967/train_11967_a/train_11967_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11967_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11967_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectatic changes in the inferior lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation with air bronchogram in the laterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_449/valid_449_b/valid_449_b_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_449_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_449_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Bilateral peripheral lung focal consolidations with round morphology", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the lower lobe and upper lobe of both lungs and the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Findings more prominent in the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10174/train_10174_a/train_10174_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10174_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10174_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations with air bronchograms in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1119/train_1119_b/train_1119_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1119_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1119_b_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1119/train_1119_b/train_1119_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1119_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1119_b_2.nii.gz", "disease_mask_channel": "7", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1731/train_1731_a/train_1731_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1731_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1731_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Extensive, predominantly subpleural areas of consolidation in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_991/valid_991_a/valid_991_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_991_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_991/valid_991_a/valid_991_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_991_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes in the left upper lobe's inferior lingula", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10670/train_10670_a/train_10670_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10670_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10670_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of atypical pneumonic infiltration in both lungs, more prominent towards the bases", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5460/train_5460_b/train_5460_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5460_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5460_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional consolidations accompanying ground glass opacities", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_930_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_930_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Increased density in the dependent portions of both upper lung lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_764/valid_764_a/valid_764_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_764_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_764_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterior segment of the left lower lobe with visible air bronchograms", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13591/train_13591_a/train_13591_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13591_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13591_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground glass densities in the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13256/train_13256_b/train_13256_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13256_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13256_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13492/train_13492_b/train_13492_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13492_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13492_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacity in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13141/train_13141_a/train_13141_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13141_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13141_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse patchy ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_j/train_13479_j_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_j_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_j_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground-glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the peripheral subpleural areas of the lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground-glass opacities in the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the basal segments of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13577/train_13577_a/train_13577_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13577_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13577_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13431/train_13431_a/train_13431_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13431_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13431_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacity in the apicoposterior segment of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13278/train_13278_b/train_13278_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13278_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13278_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the laterobasal segment of the right middle and lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13098/train_13098_a/train_13098_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13098_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13098_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the paraspinal area of the right lower lobe superior segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities observed", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground glass density in the mediobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Areas of ground-glass opacity in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13189/train_13189_a/train_13189_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13189_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13189_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nonspecific ground glass opacities anterior to the sequestration in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground-glass opacity with septal thickening in the peripheral subpleural area of the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Crazy paving appearances in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7331/train_7331_a/train_7331_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7331_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7331_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities surrounding centriacinar nodular infiltrates in the right lower lobe basal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and central ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_a/train_2163_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral, subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_682/train_682_a/train_682_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_682_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_682_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities with indistinct borders in the lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1601/train_1601_a/train_1601_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1601_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1601_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground-glass opacities with faint borders in the laterobasal-posterobasal segments of both lower lobes of the lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5231/train_5231_a/train_5231_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5231_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5231_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the upper and lower lobes of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6803/train_6803_a/train_6803_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6803_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6803_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacity in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6139/train_6139_a/train_6139_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6139_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6139_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density in the superior segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_982/train_982_a/train_982_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_982_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_982_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Pneumonic infiltrates with ground glass opacities in all lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5254/train_5254_b/train_5254_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5254_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5254_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacities in the subpleural area of the right lower lobe basal segments", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1653/train_1653_a/train_1653_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1653_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1653_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral localized ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5211/train_5211_a/train_5211_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5211_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5211_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density at the level of the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5483/train_5483_a/train_5483_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5483_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5483_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass appearance in the peripheral area of the anterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally arranged and round-appearing ground-glass opacities in nearly all areas of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Decreased volume of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Fainter appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "More amorphous appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_177/valid_177_a/valid_177_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_177_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_177_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral lungs with ground glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7294/train_7294_a/train_7294_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7294_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7294_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Central-peripheral localized nodular ground glass opacities with faint borders in the basal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10888/train_10888_b/train_10888_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10888_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10888_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Subcentimeter ground glass nodule in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and lower lobes of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and middle lobes of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities are more prominent in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_595/train_595_a/train_595_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_595_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_595_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral basal segments of the lower lobes with patchy ground-glass opacities and interstitial expansion", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5679/train_5679_a/train_5679_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5679_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5679_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripherally located ground glass densities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "7 mm ground-glass opacity with a surrounding halo in the basal segment of the lower lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight ground-glass opacities at the apicoposterior level of the upper lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_342/valid_342_a/valid_342_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_342_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_342_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground glass density in a subpleural distribution in the posterior aspect of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12470/train_12470_a/train_12470_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12470_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12470_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacities in both lungs, predominantly in the periphery", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2254/train_2254_a/train_2254_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2254_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2254_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Atypical infiltrative areas in the form of ground glass nodules in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2977/train_2977_a/train_2977_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2977_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2977_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Widespread subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11074/train_11074_a/train_11074_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11074_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11074_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral-subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Surrounding ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the superior segment of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the posterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5730/train_5730_a/train_5730_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5730_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5730_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities around some of the nodules", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6954/train_6954_a/train_6954_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6954_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6954_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "10 mm nodular ground glass opacity in the posterobasal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_449/valid_449_b/valid_449_b_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_449_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_449_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Mild ground-glass opacities in the bilateral peripheral lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the lower lobe and upper lobe of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_757/train_757_a/train_757_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_757_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_757_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Faint patchy ground glass opacities in bilateral lungs with peripheral and peribronchovascular distribution", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10174/train_10174_a/train_10174_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10174_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10174_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5460/train_5460_b/train_5460_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5460_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5460_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and centrally located ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_930_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_930_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Focal area of ground-glass opacity in the right middle lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_valid_single_prompt_atelectasis, consolidation.json

@@ -0,0 +1,72 @@
+{"volume_path": "dataset/train_fixed/train_13082/train_13082_a/train_13082_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13082_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13082_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Focal consolidative density at the paramediastinal level of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13591/train_13591_a/train_13591_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13591_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13591_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes in the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13035/train_13035_a/train_13035_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13035_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13035_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectasis in the bilateral lower lobe posterobasal segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13035/train_13035_a/train_13035_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13035_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13035_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Dependent density increases in the bilateral lower lobe posterobasal segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13177/train_13177_a/train_13177_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13177_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13177_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes causing mild structural distortion in the left lung inferior lingular segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Extensive consolidation areas in all segments of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation areas showing more confluence", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13256/train_13256_b/train_13256_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13256_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13256_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of consolidation in all segments of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13119/train_13119_c/train_13119_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13119_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13119_c_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13492/train_13492_b/train_13492_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13492_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13492_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of consolidation in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13075/train_13075_a/train_13075_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13075_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13075_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectatic changes at the basal levels of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Focal consolidations in the peripheral subpleural areas of the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Nodular consolidations in the basal segments of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13292/train_13292_a/train_13292_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13292_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13292_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in both lungs adjacent to the pleural effusion", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Newly emerged consolidation area in the mediobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of pneumonic consolidation with air bronchograms in the middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of pneumonic consolidation with air bronchograms in the lower lobes of both lungs, more prominently on the right", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the lung adjacent to the pleural effusion in the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Atelectasis, consolidation", "disease_findings": "Locally consolidated lung segments in both lungs, most prominently in the upper lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Cystic areas within the consolidated lung segments", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_240/valid_240_a/valid_240_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_240_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_240_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Large area of consolidation with irregular margins in the left lung hilum", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6510/train_6510_a/train_6510_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6510_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6510_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Patchy consolidations in the basal segments of the lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6510/train_6510_a/train_6510_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6510_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6510_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Patchy consolidations in the peripheral lung parenchyma", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10983/train_10983_a/train_10983_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10983_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10983_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes at the apical levels of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_a/train_2163_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7569/train_7569_d/train_7569_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7569_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7569_d_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Central and peripheral consolidations, particularly in the upper lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7569/train_7569_d/train_7569_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7569_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7569_d_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_682/train_682_a/train_682_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_682_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_682_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation with air bronchograms in the superior-posterior basal segments of the lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5231/train_5231_a/train_5231_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5231_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5231_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Peripheral and central consolidations in the upper and lower lobes of both lungs and the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_982/train_982_a/train_982_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_982_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_982_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Bilateral subpleural consolidations", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Multilobar consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Peripheral consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subpleural consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Predominantly dorsal consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7250/train_7250_i/train_7250_i_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7250_i_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7250_i_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Localized atelectasis in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the superior segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the posterobasal segment of the left lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Atelectasis, consolidation", "disease_findings": "Recent consolidations in the superior segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Atelectasis, consolidation", "disease_findings": "Recent consolidations in the posterobasal segment of the left lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis adjacent to the effusion in both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5211/train_5211_a/train_5211_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5211_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5211_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild dependent atelectasis in the posterior lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5483/train_5483_a/train_5483_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5483_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5483_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional areas of atelectasis in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring in the left upper lobe inferior lingular segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7282/train_7282_a/train_7282_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7282_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7282_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectasis and scarring more prominently in the basal segments of both lower lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_177/valid_177_a/valid_177_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_177_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_177_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional consolidations in the lower lobes and peripheral regions of the lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Nodular consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of increased density in air bronchograms", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11150/train_11150_b/train_11150_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11150_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11150_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of subsegmental atelectasis in the right lung middle lobe medial segment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11150/train_11150_b/train_11150_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11150_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11150_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of subsegmental atelectasis in the left lung upper lobe lingular segment inferior subsegment", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_2977/train_2977_a/train_2977_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2977_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2977_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1441/train_1441_a/train_1441_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1441_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1441_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectasis in the inferior segment of the left lung lingula", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11480/train_11480_c/train_11480_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11480_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11480_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Right lung completely atelectatic", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6551/train_6551_a/train_6551_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6551_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6551_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Passive atelectatic changes in the medial segment of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_6551/train_6551_a/train_6551_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6551_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6551_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Pleuroparenchymal fibroatelectatic changes in the inferior lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11967/train_11967_a/train_11967_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11967_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11967_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectatic changes in the paracardiac areas of the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11967/train_11967_a/train_11967_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11967_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11967_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Subsegmental atelectatic changes in the inferior lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation with air bronchogram in the laterobasal segment of the right lower lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_449/valid_449_b/valid_449_b_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_449_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_449_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Bilateral peripheral lung focal consolidations with round morphology", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations in the lower lobe and upper lobe of both lungs and the middle lobe of the right lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Findings more prominent in the lower lobes of both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10174/train_10174_a/train_10174_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10174_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10174_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidations with air bronchograms in the lower lobe of the left lung", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1119/train_1119_b/train_1119_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1119_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1119_b_2.nii.gz", "disease_mask_channel": "6", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1119/train_1119_b/train_1119_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1119_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1119_b_2.nii.gz", "disease_mask_channel": "7", "disease_label": "Atelectasis, consolidation", "disease_findings": "Atelectasis in the lingular segment of the left upper lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_1731/train_1731_a/train_1731_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1731_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1731_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Extensive, predominantly subpleural areas of consolidation in both lungs", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_991/valid_991_a/valid_991_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_991_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes in the right middle lobe", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_991/valid_991_a/valid_991_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_991_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Atelectasis, consolidation", "disease_findings": "Mild atelectatic changes in the left upper lobe's inferior lingula", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_10670/train_10670_a/train_10670_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10670_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10670_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Areas of atypical pneumonic infiltration in both lungs, more prominent towards the bases", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/train_fixed/train_5460/train_5460_b/train_5460_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5460_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5460_b_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Atelectasis, consolidation", "disease_findings": "Occasional consolidations accompanying ground glass opacities", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_930_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_930_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Atelectasis, consolidation", "disease_findings": "Increased density in the dependent portions of both upper lung lobes", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}
+{"volume_path": "dataset/valid_fixed/valid_764/valid_764_a/valid_764_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_764_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_764_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Atelectasis, consolidation", "disease_findings": "Consolidation in the posterior segment of the left lower lobe with visible air bronchograms", "disease_class": 150, "disease_label_text": "Atelectasis, consolidation"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_valid_single_prompt_effusion+opacity.json

@@ -0,0 +1,77 @@
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Progressive pleural effusion reaching a diameter of 3 cm between the leaves of the right pleura", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13119/train_13119_c/train_13119_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13119_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13119_c_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13013/train_13013_a/train_13013_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13013_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13013_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion more prominent on the right, measuring 60 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13292/train_13292_a/train_13292_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13292_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13292_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion, more prominent on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring approximately 45 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_240/valid_240_a/valid_240_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_240_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_240_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural thickening, more pronounced on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Thickening of the pleura adjacent to the effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring 1.5 cm on the right at its deepest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_851/valid_851_a/valid_851_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_851_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_851_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Nodular pleural thickening in the superior segment of the right lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11480/train_11480_c/train_11480_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11480_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11480_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_764/valid_764_a/valid_764_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_764_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_764_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Air-fluid levels in the superior perihilar region of the left lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13591/train_13591_a/train_13591_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13591_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13591_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground glass densities in the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13256/train_13256_b/train_13256_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13256_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13256_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13492/train_13492_b/train_13492_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13492_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13492_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacity in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13141/train_13141_a/train_13141_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13141_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13141_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse patchy ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_j/train_13479_j_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_j_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_j_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground-glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the peripheral subpleural areas of the lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground-glass opacities in the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the basal segments of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13577/train_13577_a/train_13577_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13577_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13577_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13431/train_13431_a/train_13431_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13431_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13431_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacity in the apicoposterior segment of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13278/train_13278_b/train_13278_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13278_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13278_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the laterobasal segment of the right middle and lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13098/train_13098_a/train_13098_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13098_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13098_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the paraspinal area of the right lower lobe superior segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities observed", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground glass density in the mediobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Areas of ground-glass opacity in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13189/train_13189_a/train_13189_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13189_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13189_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nonspecific ground glass opacities anterior to the sequestration in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground-glass opacity with septal thickening in the peripheral subpleural area of the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Crazy paving appearances in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7331/train_7331_a/train_7331_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7331_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7331_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities surrounding centriacinar nodular infiltrates in the right lower lobe basal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and central ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_a/train_2163_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral, subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_682/train_682_a/train_682_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_682_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_682_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities with indistinct borders in the lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1601/train_1601_a/train_1601_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1601_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1601_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground-glass opacities with faint borders in the laterobasal-posterobasal segments of both lower lobes of the lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5231/train_5231_a/train_5231_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5231_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5231_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the upper and lower lobes of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6803/train_6803_a/train_6803_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6803_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6803_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacity in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6139/train_6139_a/train_6139_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6139_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6139_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density in the superior segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_982/train_982_a/train_982_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_982_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_982_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Pneumonic infiltrates with ground glass opacities in all lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5254/train_5254_b/train_5254_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5254_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5254_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacities in the subpleural area of the right lower lobe basal segments", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1653/train_1653_a/train_1653_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1653_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1653_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral localized ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5211/train_5211_a/train_5211_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5211_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5211_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density at the level of the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5483/train_5483_a/train_5483_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5483_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5483_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass appearance in the peripheral area of the anterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally arranged and round-appearing ground-glass opacities in nearly all areas of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Decreased volume of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Fainter appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "More amorphous appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_177/valid_177_a/valid_177_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_177_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_177_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral lungs with ground glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7294/train_7294_a/train_7294_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7294_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7294_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Central-peripheral localized nodular ground glass opacities with faint borders in the basal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10888/train_10888_b/train_10888_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10888_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10888_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Subcentimeter ground glass nodule in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and lower lobes of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and middle lobes of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities are more prominent in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_595/train_595_a/train_595_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_595_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_595_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral basal segments of the lower lobes with patchy ground-glass opacities and interstitial expansion", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5679/train_5679_a/train_5679_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5679_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5679_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripherally located ground glass densities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "7 mm ground-glass opacity with a surrounding halo in the basal segment of the lower lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight ground-glass opacities at the apicoposterior level of the upper lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_342/valid_342_a/valid_342_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_342_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_342_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground glass density in a subpleural distribution in the posterior aspect of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12470/train_12470_a/train_12470_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12470_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12470_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacities in both lungs, predominantly in the periphery", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2254/train_2254_a/train_2254_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2254_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2254_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Atypical infiltrative areas in the form of ground glass nodules in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2977/train_2977_a/train_2977_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2977_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2977_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Widespread subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11074/train_11074_a/train_11074_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11074_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11074_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral-subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Surrounding ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the superior segment of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the posterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5730/train_5730_a/train_5730_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5730_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5730_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities around some of the nodules", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6954/train_6954_a/train_6954_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6954_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6954_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "10 mm nodular ground glass opacity in the posterobasal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_449/valid_449_b/valid_449_b_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_449_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_449_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Mild ground-glass opacities in the bilateral peripheral lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the lower lobe and upper lobe of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_757/train_757_a/train_757_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_757_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_757_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Faint patchy ground glass opacities in bilateral lungs with peripheral and peribronchovascular distribution", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10174/train_10174_a/train_10174_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10174_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10174_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5460/train_5460_b/train_5460_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5460_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5460_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and centrally located ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_930_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_930_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Focal area of ground-glass opacity in the right middle lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_valid_single_prompt_effusion.json

@@ -0,0 +1,12 @@
+{"volume_path": "dataset/train_fixed/train_13583/train_13583_d/train_13583_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13583_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13583_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Progressive pleural effusion reaching a diameter of 3 cm between the leaves of the right pleura", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13119/train_13119_c/train_13119_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13119_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13119_c_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Pleural effusion or thickening", "disease_findings": "Minimal bilateral pleural effusion", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13013/train_13013_a/train_13013_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13013_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13013_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion more prominent on the right, measuring 60 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_13292/train_13292_a/train_13292_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13292_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13292_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion, more prominent on the left", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring approximately 45 mm at its thickest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusions", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_240/valid_240_a/valid_240_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_240_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_240_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural thickening, more pronounced on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_1261/train_1261_d/train_1261_d_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1261_d_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1261_d_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Thickening of the pleura adjacent to the effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_7209/train_7209_a/train_7209_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_7209_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_7209_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Bilateral pleural effusion measuring 1.5 cm on the right at its deepest point", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_851/valid_851_a/valid_851_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_851_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_851_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Pleural effusion or thickening", "disease_findings": "Nodular pleural thickening in the superior segment of the right lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/train_fixed/train_11480/train_11480_c/train_11480_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11480_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11480_c_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Pleural effusion or thickening", "disease_findings": "Pleural effusion on the right", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}
+{"volume_path": "dataset/valid_fixed/valid_764/valid_764_a/valid_764_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_764_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_764_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Pleural effusion or thickening", "disease_findings": "Air-fluid levels in the superior perihilar region of the left lower lobe", "disease_class": 159, "disease_label_text": "Pleural effusion or thickening"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/disease_valid_single_prompt_opacity.json

@@ -0,0 +1,65 @@
+{"volume_path": "dataset/train_fixed/train_13591/train_13591_a/train_13591_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13591_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13591_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground glass densities in the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13256/train_13256_b/train_13256_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13256_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13256_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13492/train_13492_b/train_13492_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13492_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13492_b_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacity in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13141/train_13141_a/train_13141_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13141_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13141_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Diffuse patchy ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_j/train_13479_j_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_j_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_j_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground-glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the peripheral subpleural areas of the lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground-glass opacities in the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12991/train_12991_a/train_12991_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12991_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12991_a_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the basal segments of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13577/train_13577_a/train_13577_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13577_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13577_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13431/train_13431_a/train_13431_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13431_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13431_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacity in the apicoposterior segment of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13278/train_13278_b/train_13278_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13278_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13278_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the laterobasal segment of the right middle and lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13098/train_13098_a/train_13098_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13098_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13098_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in all segments of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the paraspinal area of the right lower lobe superior segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13572/train_13572_a/train_13572_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13572_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13572_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the right lower lobe posterobasal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities observed", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13479/train_13479_e/train_13479_e_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13479_e_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13479_e_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground glass density in the mediobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13481/train_13481_a/train_13481_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13481_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13481_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Areas of ground-glass opacity in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13189/train_13189_a/train_13189_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_13189_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_13189_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Nonspecific ground glass opacities anterior to the sequestration in the lung parenchyma", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Increase in ground-glass opacity with septal thickening in the peripheral subpleural area of the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_13284/train_13284_a/train_13284_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_13284_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_13284_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Crazy paving appearances in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12579/train_12579_c/train_12579_c_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_12579_c_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_12579_c_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7331/train_7331_a/train_7331_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7331_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7331_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities surrounding centriacinar nodular infiltrates in the right lower lobe basal segment", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_344/train_344_c/train_344_c_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_344_c_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_344_c_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and central ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_a/train_2163_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral, subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_682/train_682_a/train_682_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_682_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_682_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities with indistinct borders in the lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1601/train_1601_a/train_1601_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1601_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1601_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground-glass opacities with faint borders in the laterobasal-posterobasal segments of both lower lobes of the lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5231/train_5231_a/train_5231_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5231_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5231_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the upper and lower lobes of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6803/train_6803_a/train_6803_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6803_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6803_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacity in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6139/train_6139_a/train_6139_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_6139_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_6139_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density in the superior segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_982/train_982_a/train_982_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_982_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_982_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Pneumonic infiltrates with ground glass opacities in all lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5599/train_5599_a/train_5599_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5599_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5599_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5254/train_5254_b/train_5254_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5254_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5254_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Focal ground glass opacities in the subpleural area of the right lower lobe basal segments", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1653/train_1653_a/train_1653_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1653_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1653_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral localized ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5211/train_5211_a/train_5211_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5211_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5211_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight patchy ground-glass density at the level of the inferior lingula of the left upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5483/train_5483_a/train_5483_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5483_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5483_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass appearance in the peripheral area of the anterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally arranged and round-appearing ground-glass opacities in nearly all areas of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Decreased volume of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Fainter appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2163/train_2163_b/train_2163_b_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_2163_b_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_2163_b_1.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "More amorphous appearance of ground-glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_177/valid_177_a/valid_177_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_177_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_177_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral lungs with ground glass opacities", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_7294/train_7294_a/train_7294_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_7294_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_7294_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Central-peripheral localized nodular ground glass opacities with faint borders in the basal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10888/train_10888_b/train_10888_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_10888_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_10888_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Subcentimeter ground glass nodule in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and lower lobes of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Peripherally located ground glass opacities in the upper and middle lobes of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1431/train_1431_a/train_1431_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_1431_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_1431_a_2.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities are more prominent in the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_595/train_595_a/train_595_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_595_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_595_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Bilateral basal segments of the lower lobes with patchy ground-glass opacities and interstitial expansion", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5679/train_5679_a/train_5679_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5679_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5679_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripherally located ground glass densities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "7 mm ground-glass opacity with a surrounding halo in the basal segment of the lower lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6983/train_6983_a/train_6983_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6983_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6983_a_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Slight ground-glass opacities at the apicoposterior level of the upper lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_342/valid_342_a/valid_342_a_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_342_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_342_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Minimal ground glass density in a subpleural distribution in the posterior aspect of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_12470/train_12470_a/train_12470_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_12470_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_12470_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy ground-glass opacities in both lungs, predominantly in the periphery", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2254/train_2254_a/train_2254_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2254_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2254_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Atypical infiltrative areas in the form of ground glass nodules in the upper and lower lobes of both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_2977/train_2977_a/train_2977_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_2977_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_2977_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Widespread subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11074/train_11074_a/train_11074_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_11074_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_11074_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Patchy, peripheral-subpleural ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "3", "disease_label": "Groundglass opacity", "disease_findings": "Surrounding ground glass opacity in the laterobasal segment of the right lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "4", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the superior segment of both lower lobes", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_11195/train_11195_a/train_11195_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_11195_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_11195_a_2.nii.gz", "disease_mask_channel": "5", "disease_label": "Groundglass opacity", "disease_findings": "Nodular ground glass opacities in the posterior segment of the right upper lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5730/train_5730_a/train_5730_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_5730_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_5730_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities around some of the nodules", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_6954/train_6954_a/train_6954_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_6954_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_6954_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "10 mm nodular ground glass opacity in the posterobasal segment of the left lower lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_449/valid_449_b/valid_449_b_2.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_449_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/valid_449_b_2.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Mild ground-glass opacities in the bilateral peripheral lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_1765/train_1765_a/train_1765_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_1765_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_1765_a_1.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Ground-glass opacities in the lower lobe and upper lobe of both lungs and the middle lobe of the right lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_757/train_757_a/train_757_a_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_757_a_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_757_a_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Faint patchy ground glass opacities in bilateral lungs with peripheral and peribronchovascular distribution", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_10174/train_10174_a/train_10174_a_1.nii.gz", "organ_mask": "organ_mask_whole/train/train_10174_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/train_10174_a_1.nii.gz", "disease_mask_channel": "1", "disease_label": "Groundglass opacity", "disease_findings": "Ground glass opacities in the lower lobe of the left lung", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/train_fixed/train_5460/train_5460_b/train_5460_b_2.nii.gz", "organ_mask": "organ_mask_whole/train/train_5460_b_2.nii.gz", "disease_mask": "seg_rxg_smooth/train_5460_b_2.nii.gz", "disease_mask_channel": "0", "disease_label": "Groundglass opacity", "disease_findings": "Peripheral and centrally located ground glass opacities in both lungs", "disease_class": 154, "disease_label_text": "Groundglass opacity"}
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid/valid_930_a_1.nii.gz", "disease_mask": "seg_rxg_smooth/valid_930_a_1.nii.gz", "disease_mask_channel": "2", "disease_label": "Groundglass opacity", "disease_findings": "Focal area of ground-glass opacity in the right middle lobe", "disease_class": 154, "disease_label_text": "Groundglass opacity"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/match.ipynb

@@ -0,0 +1,304 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "id": "83d855d7",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Saved: train_effusion_findings.json\n",
+      "Input1: 551, Kept(matched): 85, Dropped: 466\n"
+     ]
+    }
+   ],
+   "source": [
+    "import json, re\n",
+    "from pathlib import Path\n",
+    "from collections import OrderedDict\n",
+    "\n",
+    "# ====== paths (modify) ======\n",
+    "jsonl_1 = \"/home/shuhan/blobdata_sd/CT-RATE/train_4k_effusion.json\"\n",
+    "jsonl_2 = \"/home/shuhan/blobdata_sd/CT-RATE/disease_mask_json/disease_train_single_prompt_checked_label.json\"\n",
+    "out_jsonl = \"train_effusion_findings.json\"\n",
+    "\n",
+    "# jsonl_1 = \"/home/shuhan/blobdata_sd/CT-RATE/valid_effusion.json\"\n",
+    "# jsonl_2 = \"/home/shuhan/blobdata_sd/CT-RATE/disease_mask_json/disease_valid_single_prompt_checked_label.json\"\n",
+    "# out_jsonl = \"valid_effusion_findings.json\"\n",
+    "\n",
+    "\n",
+    "def iter_jsonl(path):\n",
+    "    with open(path, \"r\", encoding=\"utf-8\") as f:\n",
+    "        for line in f:\n",
+    "            line = line.strip()\n",
+    "            if line:\n",
+    "                yield json.loads(line)\n",
+    "\n",
+    "def volume_key(volume_path: str) -> str:\n",
+    "    \"\"\"match rule: ignore trailing _1/_2 before extension\"\"\"\n",
+    "    name = Path(volume_path).name\n",
+    "    if name.endswith(\".nii.gz\"):\n",
+    "        core = name[:-7]\n",
+    "    elif name.endswith(\".mha\"):\n",
+    "        core = name[:-4]\n",
+    "    else:\n",
+    "        core = Path(name).stem\n",
+    "    core = re.sub(r\"_(?:1|2)$\", \"\", core)\n",
+    "    return core\n",
+    "\n",
+    "# Build key -> merged disease_findings (dedup)\n",
+    "key2findings = OrderedDict()\n",
+    "for obj in iter_jsonl(jsonl_2):\n",
+    "    k = volume_key(obj.get(\"volume_path\", \"\"))\n",
+    "    df = (obj.get(\"disease_findings\") or \"\").strip()\n",
+    "    if not k:\n",
+    "        continue\n",
+    "    key2findings.setdefault(k, [])\n",
+    "    if df and df not in key2findings[k]:\n",
+    "        key2findings[k].append(df)\n",
+    "\n",
+    "kept = 0\n",
+    "seen = 0\n",
+    "with open(out_jsonl, \"w\", encoding=\"utf-8\") as w:\n",
+    "    for obj in iter_jsonl(jsonl_1):\n",
+    "        seen += 1\n",
+    "        k = volume_key(obj.get(\"volume_path\", \"\"))\n",
+    "        if k not in key2findings or not key2findings[k]:\n",
+    "            continue  # only keep matched\n",
+    "        obj[\"disease_findings\"] = \" | \".join(key2findings[k])\n",
+    "        w.write(json.dumps(obj, ensure_ascii=False) + \"\\n\")\n",
+    "        kept += 1\n",
+    "\n",
+    "print(f\"Saved: {out_jsonl}\")\n",
+    "print(f\"Input1: {seen}, Kept(matched): {kept}, Dropped: {seen - kept}\")\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "id": "008a1daa",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "==== Effusion compare (ignore _1/_2) ====\n",
+      "Common volumes (exist in both): 2566\n",
+      "1) JSONL has effusion AND CSV has effusion: 153\n",
+      "2) JSONL has effusion BUT CSV no effusion:  23\n",
+      "3) JSONL no effusion  BUT CSV has effusion:108\n",
+      "4) JSONL no effusion  AND CSV no effusion: 2282\n",
+      "\n",
+      "[Coverage]\n",
+      "Only in JSONL: 0\n",
+      "Only in CSV:   22427\n"
+     ]
+    }
+   ],
+   "source": [
+    "import json, re\n",
+    "from pathlib import Path\n",
+    "import pandas as pd\n",
+    "\n",
+    "# ====== paths (modify) ======\n",
+    "jsonl_2_path = \"/home/shuhan/blobdata_sd/CT-RATE/disease_mask_json/disease_train_single_prompt_checked_label.json\"\n",
+    "csv_path     = \"/home/shuhan/blobdata_sd/CT-RATE/multi_abnormality_labels/train_predicted_labels.csv\"\n",
+    "\n",
+    "def volume_key(p: str) -> str:\n",
+    "    \"\"\"Ignore trailing _1/_2 before extension (nii.gz/mha).\"\"\"\n",
+    "    name = Path(str(p).strip().strip('\"').strip(\"'\")).name\n",
+    "    if name.endswith(\".nii.gz\"):\n",
+    "        core = name[:-7]\n",
+    "    elif name.endswith(\".mha\"):\n",
+    "        core = name[:-4]\n",
+    "    else:\n",
+    "        core = Path(name).stem\n",
+    "    core = re.sub(r\"_(?:1|2)$\", \"\", core)  # drop trailing _1/_2\n",
+    "    return core\n",
+    "\n",
+    "def json_has_effusion(obj: dict) -> bool:\n",
+    "    s = \" \".join([\n",
+    "        str(obj.get(\"disease_label\", \"\") or \"\"),\n",
+    "        str(obj.get(\"disease_label_text\", \"\") or \"\"),\n",
+    "        str(obj.get(\"disease_findings\", \"\") or \"\"),\n",
+    "    ]).lower()\n",
+    "    return \"effusion\" in s\n",
+    "\n",
+    "# -----------------------------\n",
+    "# 1) JSONL: key -> effusion?\n",
+    "# -----------------------------\n",
+    "eff_json = {}\n",
+    "with open(jsonl_2_path, \"r\", encoding=\"utf-8\") as f:\n",
+    "    for line in f:\n",
+    "        line = line.strip()\n",
+    "        if not line:\n",
+    "            continue\n",
+    "        obj = json.loads(line)\n",
+    "        k = volume_key(obj.get(\"volume_path\", \"\"))\n",
+    "        if not k:\n",
+    "            continue\n",
+    "        eff_json[k] = eff_json.get(k, False) or json_has_effusion(obj)\n",
+    "\n",
+    "# -----------------------------\n",
+    "# 2) CSV: key -> effusion?\n",
+    "#    Any column containing \"effusion\" == 1 -> effusion\n",
+    "# -----------------------------\n",
+    "df = pd.read_csv(csv_path)\n",
+    "if \"VolumeName\" not in df.columns:\n",
+    "    raise ValueError(\"CSV must contain column: VolumeName\")\n",
+    "\n",
+    "eff_cols = [c for c in df.columns if \"effusion\" in c.lower()]\n",
+    "if not eff_cols:\n",
+    "    raise ValueError(\"No effusion-related columns found in CSV (col name contains 'effusion').\")\n",
+    "\n",
+    "eff_csv = {}\n",
+    "for _, row in df.iterrows():\n",
+    "    k = volume_key(row[\"VolumeName\"])\n",
+    "    vals = []\n",
+    "    for c in eff_cols:\n",
+    "        v = row.get(c, 0)\n",
+    "        try:\n",
+    "            vals.append(int(v))\n",
+    "        except:\n",
+    "            vals.append(0)\n",
+    "    is_eff = (max(vals) == 1)\n",
+    "    eff_csv[k] = eff_csv.get(k, False) or is_eff  # aggregate _1/_2\n",
+    "\n",
+    "# -----------------------------\n",
+    "# 3) Compare on common keys\n",
+    "# -----------------------------\n",
+    "common = set(eff_json) & set(eff_csv)\n",
+    "\n",
+    "both_yes = sum(1 for k in common if eff_json[k] and eff_csv[k])\n",
+    "json_yes_csv_no = sum(1 for k in common if eff_json[k] and (not eff_csv[k]))\n",
+    "json_no_csv_yes = sum(1 for k in common if (not eff_json[k]) and eff_csv[k])\n",
+    "both_no = sum(1 for k in common if (not eff_json[k]) and (not eff_csv[k]))\n",
+    "\n",
+    "print(\"==== Effusion compare (ignore _1/_2) ====\")\n",
+    "print(f\"Common volumes (exist in both): {len(common)}\")\n",
+    "print(f\"1) JSONL has effusion AND CSV has effusion: {both_yes}\")\n",
+    "print(f\"2) JSONL has effusion BUT CSV no effusion:  {json_yes_csv_no}\")\n",
+    "print(f\"3) JSONL no effusion  BUT CSV has effusion:{json_no_csv_yes}\")\n",
+    "print(f\"4) JSONL no effusion  AND CSV no effusion: {both_no}\")\n",
+    "\n",
+    "# (optional) if you also want to know unmatched coverage:\n",
+    "print(\"\\n[Coverage]\")\n",
+    "print(f\"Only in JSONL: {len(set(eff_json) - set(eff_csv))}\")\n",
+    "print(f\"Only in CSV:   {len(set(eff_csv) - set(eff_json))}\")\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "id": "35ba659d",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "total=370, effusion_records=72\n",
+      "effusion label types:\n",
+      "- Atelectasis\n"
+     ]
+    }
+   ],
+   "source": [
+    "import json\n",
+    "from pathlib import Path\n",
+    "\n",
+    "in_jsonl  = \"/home/shuhan/blobdata_sd/CT-RATE/disease_mask_json/disease_valid_single_prompt_checked_label.json\"\n",
+    "out_jsonl = \"disease_valid_single_prompt_atelectasis, consolidation.json\"   # 不想保存就改成 None\n",
+    "\n",
+    "def split_labels(s: str):\n",
+    "    return [x.strip() for x in str(s or \"\").split(\",\") if x.strip()]\n",
+    "\n",
+    "def is_effusion_label(label: str) -> bool:\n",
+    "    return \"atelectasis\" in label.lower()\n",
+    "\n",
+    "n_total = 0\n",
+    "n_hit = 0\n",
+    "effusion_types = set()\n",
+    "\n",
+    "out_f = open(out_jsonl, \"w\", encoding=\"utf-8\") if out_jsonl else None\n",
+    "\n",
+    "with open(in_jsonl, \"r\", encoding=\"utf-8\") as f:\n",
+    "    for line in f:\n",
+    "        line = line.strip()\n",
+    "        if not line:\n",
+    "            continue\n",
+    "        n_total += 1\n",
+    "        rec = json.loads(line)\n",
+    "\n",
+    "        labels = split_labels(rec.get(\"disease_label\", \"\"))  # 只从 disease_label 中提取\n",
+    "        hit = [lb for lb in labels if is_effusion_label(lb)]\n",
+    "\n",
+    "        if hit:\n",
+    "            n_hit += 1\n",
+    "            for h in hit:\n",
+    "                effusion_types.add(h)\n",
+    "            if out_f:\n",
+    "                out_f.write(json.dumps(rec, ensure_ascii=False) + \"\\n\")\n",
+    "\n",
+    "if out_f:\n",
+    "    out_f.close()\n",
+    "\n",
+    "print(f\"total={n_total}, effusion_records={n_hit}\")\n",
+    "print(\"effusion label types:\")\n",
+    "for x in sorted(effusion_types):\n",
+    "    print(\"-\", x)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "41db104f",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import json\n",
+    "\n",
+    "src_path = \"/home/shuhan/blobdata_sd/CT-RATE/disease_mask_json/disease_train_single_prompt_checked_label.json\"\n",
+    "target_label = \"Pleural effusion or thickening\"\n",
+    "\n",
+    "filtered = []\n",
+    "with open(src_path, \"r\", encoding=\"utf-8\") as f:\n",
+    "    for line in f:\n",
+    "        line = line.strip()\n",
+    "        if not line:\n",
+    "            continue\n",
+    "        obj = json.loads(line)\n",
+    "        if obj.get(\"disease_label\") == target_label:\n",
+    "            filtered.append(obj)\n",
+    "\n",
+    "filtered[:3]  # preview\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "genct",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.0"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/effusion_mask_json/valid_effusion_findings.json

@@ -0,0 +1 @@
+{"volume_path": "dataset/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "organ_mask": "organ_mask_whole/valid_fixed/valid_930/valid_930_a/valid_930_a_1.nii.gz", "effusion_mask": "effusion_mask/valid_fixed/valid_930_a_1.nii.gz", "findings": "Trachea and main bronchi are open. Right upper, bilateral lower paratracheal millimetric lymph nodes are observed. No pathological LAP was detected in the mediastinum. Millimetric calcific plaques are observed in the aortic arch, ascending and descending aorta. Millimetric calcific lymph nodes are observed in the left hilar localization. There are also calcific plaques in the coronary arteries. The heart and mediastinal vascular structures have a natural appearance. A smear-like effusion is observed in both hemithorax. In the evaluation of both lung parenchyma; Dependent density increases are observed in the posterior sections of both upper lobes of the lungs. In addition, there are central acinar and paraseptal emphysematous areas in the upper lobes of both lungs. In the middle lobe of the right lung, a focal ground-glass area with fissure-based nonspecific appearance is observed. In addition, mild peribronchial thickening is observed in the lower lobes of both lungs. In the sections passing through the upper part of the abdomen, the bilateral adrenal glands appear natural. In the non-contrast examination, no obvious pathology was detected in the abdominal sections.", "impression": " More pronounced dependency increases posteriorly in the upper lobes of both lungs  More prominent central acinar emphysematous areas in the upper lobes  More pronounced bilateral effusion in the left bilateral effusion", "disease_findings": "Increased density in the dependent portions of both upper lung lobes | Central acinar and paraseptal emphysematous changes in the upper lobes of both lungs | Focal area of ground-glass opacity in the right middle lobe | Mild peribronchial thickening in the lower lobes of both lungs"}

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/metadata/all_metadata.csv

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+version https://git-lfs.github.com/spec/v1
+oid sha256:900be913106c93dc1e62dd7826af2a013f1b16a5e77a604592915ec5a6fd1213
+size 15872544

instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/metadata/clip_-1000_1000.py

@@ -0,0 +1,73 @@
+import os
+import nibabel as nib
+import pandas as pd
+import numpy as np
+from tqdm import tqdm
+from concurrent.futures import ProcessPoolExecutor, as_completed
+
+
+# ===== 路径 =====
+DATA_ROOT = "/home/shuhan/blobdata/CT-RATE/dataset/"
+TRAIN_META = "/home/shuhan/blobdata/CT-RATE/metadata/train_metadata.csv"
+VALID_META = "/home/shuhan/blobdata/CT-RATE/metadata/validation_metadata.csv"
+
+CLIP_RANGE = (-1000, 1000)
+NUM_WORKERS = max(1, (os.cpu_count() or 8) - 1)
+
+def build_full_path(basename):
+    """根据basename构造完整路径"""
+    # e.g. train_1661_b_1.nii.gz
+    stem = basename.replace(".nii.gz", "")
+    parts = stem.split("_")  # ['train','1661','b','1']
+    if len(parts) < 3:
+        raise ValueError(f"basename格式异常: {basename}")
+    # train_fixed
+    folder0 = f"{parts[0]}_fixed"
+    # train_1661
+    folder1 = f"{parts[0]}_{parts[1]}"
+    # train_1661_b
+    folder2 = f"{parts[0]}_{parts[1]}_{parts[2]}"
+    return os.path.join(DATA_ROOT, folder0, folder1, folder2, basename)
+
+
+def process_one(row):
+    """处理单个volume"""
+    basename = row["VolumeName"]
+    nii_path = build_full_path(basename)
+    if not os.path.exists(nii_path):
+        return f"[WARN] 文件不存在: {nii_path}"
+
+    try:
+        nii = nib.load(nii_path)
+        arr = nii.get_fdata().astype(np.float32)
+        vmin, vmax = float(arr.min()), float(arr.max())
+
+        # 如果已经在范围内，跳过
+        if vmin >= CLIP_RANGE[0] and vmax <= CLIP_RANGE[1]:
+            return f"[SKIP] {basename} 已在范围内 ({vmin:.1f},{vmax:.1f})"
+
+        # Clip 并保存覆盖
+        hu = np.clip(arr, CLIP_RANGE[0], CLIP_RANGE[1])
+        new_img = nib.Nifti1Image(hu, nii.affine, nii.header)
+        nib.save(new_img, nii_path)
+        return f"[OK] {basename} -> ({vmin:.1f},{vmax:.1f}) clipped"
+    except Exception as e:
+        return f"[ERROR] {nii_path}: {e}"
+
+def process_meta(meta_csv):
+    df = pd.read_csv(meta_csv)
+    results = []
+    with ProcessPoolExecutor(max_workers=NUM_WORKERS) as ex:
+        futures = {ex.submit(process_one, row): row for _, row in df.iterrows()}
+        for fut in tqdm(as_completed(futures), total=len(futures), desc=f"Processing {os.path.basename(meta_csv)}"):
+            results.append(fut.result())
+    return results
+
+if __name__ == "__main__":
+    # res_train = process_meta(TRAIN_META)
+    res_valid = process_meta(VALID_META)
+
+    # # 保存日志
+    # with open("clip_log.txt", "w") as f:
+    #     f.write("\n".join(res_train + res_valid))
+    # print("完成。日志已保存 clip_log.txt")

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instruct-pix2pix-BioMedCLIP-concat-newdata-disease/data_json/multi_abnormality_labels/valid_predicted_labels_100.csv

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