| SYSTEM: |
| NUM_GPUS: 1 |
| NUM_CPUS: 1 |
| MODEL: |
| ARCHITECTURE: unet_plus_3d |
| BLOCK_TYPE: residual_se |
| INPUT_SIZE: [17, 257, 257] |
| OUTPUT_SIZE: [17, 257, 257] |
| IN_PLANES: 1 |
| OUT_PLANES: 3 |
| TARGET_OPT: ["1"] |
| NORM_MODE: gn |
| FILTERS: [32, 64, 96, 128, 192] |
| DATASET: |
| IMAGE_NAME: |
| - w08_tr5_tc4.h5 |
| LABEL_NAME: |
| - w08_tr5_tc4_label_v3.1_polarity.h5 |
| INPUT_PATH: /data/projects/weilab/dataset/h01/syn/ |
| OUTPUT_PATH: outputs/JWR15_Synapse/syn |
| PAD_SIZE: [4, 48, 48] |
| DISTRIBUTED: True |
| REJECT_SAMPLING: |
| SIZE_THRES: 2000 |
| P: 0.95 |
| DATA_CHUNK_NUM: [20, 7, 8] |
| SOLVER: |
| LR_SCHEDULER_NAME: WarmupCosineLR |
| BASE_LR: 0.04 |
| ITERATION_STEP: 1 |
| ITERATION_SAVE: 5000 |
| ITERATION_TOTAL: 200000 |
| SAMPLES_PER_BATCH: 2 |
| INFERENCE: |
| INPUT_SIZE: [33, 257, 257] |
| OUTPUT_SIZE: [33, 257, 257] |
| OUTPUT_ACT: ["sigmoid"] |
| IS_ABSOLUTE_PATH: False |
| DO_CHUNK_TITLE: 1 |
| INPUT_PATH: /n/boslfs02/LABS/lichtman_lab/donglai/xiaomeng/alzheimer/test/ |
| OUTPUT_PATH: /n/boslfs02/LABS/lichtman_lab/donglai/xiaomeng/alzheimer/result/ |
| PAD_SIZE: [8, 128, 128] |
| AUG_MODE: mean |
| AUG_NUM: None |
| STRIDE: [16, 128, 128] |
| SAMPLES_PER_BATCH: 16 |
|
|
