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Apr 13

OSS-Bench: Benchmark Generator for Coding LLMs

In light of the rapid adoption of AI coding assistants, LLM-assisted development has become increasingly prevalent, creating an urgent need for robust evaluation of generated code quality. Existing benchmarks often require extensive manual effort to create static datasets, rely on indirect or insufficiently challenging tasks, depend on non-scalable ground truth, or neglect critical low-level security evaluations, particularly memory-safety issues. In this work, we introduce OSS-Bench, a benchmark generator that automatically constructs large-scale, live evaluation tasks from real-world open-source software. OSS-Bench replaces functions with LLM-generated code and evaluates them using three natural metrics: compilability, functional correctness, and memory safety, leveraging robust signals like compilation failures, test-suite violations, and sanitizer alerts as ground truth. In our evaluation, the benchmark, instantiated as OSS-Bench(php) and OSS-Bench(sql), profiles 17 diverse LLMs, revealing insights such as intra-family behavioral patterns and inconsistencies between model size and performance. Our results demonstrate that OSS-Bench mitigates overfitting by leveraging the evolving complexity of OSS and highlights LLMs' limited understanding of low-level code security via extended fuzzing experiments. Overall, OSS-Bench offers a practical and scalable framework for benchmarking the real-world coding capabilities of LLMs.

  • 3 authors
·
May 18, 2025

BuildBench: Benchmarking LLM Agents on Compiling Real-World Open-Source Software

Automatically compiling open-source software (OSS) projects is a vital, labor-intensive, and complex task, which makes it a good challenge for LLM Agents. Existing methods rely on manually curated rules and workflows, which cannot adapt to OSS that requires customized configuration or environment setup. Recent attempts using Large Language Models (LLMs) used selective evaluation on a subset of highly rated OSS, a practice that underestimates the realistic challenges of OSS compilation. In practice, compilation instructions are often absent, dependencies are undocumented, and successful builds may even require patching source files or modifying build scripts. We propose a more challenging and realistic benchmark, BUILD-BENCH, comprising OSS that are more diverse in quality, scale, and characteristics. Furthermore, we propose a strong baseline LLM-based agent, OSS-BUILD-AGENT, an effective system with enhanced build instruction retrieval module that achieves state-of-the-art performance on BUILD-BENCH and is adaptable to heterogeneous OSS characteristics. We also provide detailed analysis regarding different compilation method design choices and their influence to the whole task, offering insights to guide future advances. We believe performance on BUILD-BENCH can faithfully reflect an agent's ability to tackle compilation as a complex software engineering tasks, and, as such, our benchmark will spur innovation with a significant impact on downstream applications in the fields of software development and software security.

cogint Cogint ASU
·
Sep 26, 2025 2

Extending Puzzle for Mixture-of-Experts Reasoning Models with Application to GPT-OSS Acceleration

Reasoning-focused LLMs improve answer quality by generating longer reasoning traces, but the additional tokens dramatically increase serving cost, motivating inference optimization. We extend and apply Puzzle, a post-training neural architecture search (NAS) framework, to gpt-oss-120B to produce gpt-oss-puzzle-88B, a deployment-optimized derivative. Our approach combines heterogeneous MoE expert pruning, selective replacement of full-context attention with window attention, FP8 KV-cache quantization with calibrated scales, and post-training reinforcement learning to recover accuracy, while maintaining low generation length. In terms of per-token speeds, on an 8XH100 node we achieve 1.63X and 1.22X throughput speedups in long-context and short-context settings, respectively. gpt-oss-puzzle-88B also delivers throughput speedups of 2.82X on a single NVIDIA H100 GPU. However, because token counts can change with reasoning effort and model variants, per-token throughput (tok/s) and latency (ms/token) do not necessarily lead to end-to-end speedups: a 2X throughput gain is erased if traces grow 2X. Conversely, throughput gains can be spent on more reasoning tokens to improve accuracy; we therefore advocate request-level efficiency metrics that normalize throughput by tokens generated and trace an accuracy--speed frontier across reasoning efforts. We show that gpt-oss-puzzle-88B improves over gpt-oss-120B along the entire frontier, delivering up to 1.29X higher request-level efficiency. Across various benchmarks, gpt-oss-puzzle-88B matches or slightly exceeds the parent on suite-average accuracy across reasoning efforts, with retention ranging from 100.8% (high) to 108.2% (low), showing that post-training architecture search can substantially reduce inference costs without sacrificing quality.

  • 24 authors
·
Feb 12 1

CL4SE: A Context Learning Benchmark For Software Engineering Tasks

Context engineering has emerged as a pivotal paradigm for unlocking the potential of Large Language Models (LLMs) in Software Engineering (SE) tasks, enabling performance gains at test time without model fine-tuning. Despite its success, existing research lacks a systematic taxonomy of SE-specific context types and a dedicated benchmark to quantify the heterogeneous effects of different contexts across core SE workflows. To address this gap, we propose CL4SE (Context Learning for Software Engineering), a comprehensive benchmark featuring a fine-grained taxonomy of four SE-oriented context types (interpretable examples, project-specific context, procedural decision-making context, and positive & negative context), each mapped to a representative task (code generation, code summarization, code review, and patch correctness assessment). We construct high-quality datasets comprising over 13,000 samples from more than 30 open-source projects and evaluate five mainstream LLMs across nine metrics. Extensive experiments demonstrate that context learning yields an average performance improvement of 24.7% across all tasks. Specifically, procedural context boosts code review performance by up to 33% (Qwen3-Max), mixed positive-negative context improves patch assessment by 30% (DeepSeek-V3), project-specific context increases code summarization BLEU by 14.78% (GPT-Oss-120B), and interpretable examples enhance code generation PASS@1 by 5.72% (DeepSeek-V3). CL4SE establishes the first standardized evaluation framework for SE context learning, provides actionable empirical insights into task-specific context design, and releases a large-scale dataset to facilitate reproducible research in this domain.

AlgoVeri: An Aligned Benchmark for Verified Code Generation on Classical Algorithms

Vericoding refers to the generation of formally verified code from rigorous specifications. Recent AI models show promise in vericoding, but a unified methodology for cross-paradigm evaluation is lacking. Existing benchmarks test only individual languages/tools (e.g., Dafny, Verus, and Lean) and each covers very different tasks, so the performance numbers are not directly comparable. We address this gap with AlgoVeri, a benchmark that evaluates vericoding of 77 classical algorithms in Dafny, Verus, and Lean. By enforcing identical functional contracts, AlgoVeri reveals critical capability gaps in verification systems. While frontier models achieve tractable success in Dafny (40.3% for Gemini-3 Flash), where high-level abstractions and SMT automation simplify the workflow, performance collapses under the systems-level memory constraints of Verus (24.7%) and the explicit proof construction required by Lean (7.8%). Beyond aggregate metrics, we uncover a sharp divergence in test-time compute dynamics: Gemini-3 effectively utilizes iterative repair to boost performance (e.g., tripling pass rates in Dafny), whereas GPT-OSS saturates early. Finally, our error analysis shows that language design affects the refinement trajectory: while Dafny allows models to focus on logical correctness, Verus and Lean trap models in persistent syntactic and semantic barriers. All data and evaluation code can be found at https://github.com/haoyuzhao123/algoveri.

  • 9 authors
·
Feb 10

Max It or Miss It: Benchmarking LLM On Solving Extremal Problems

Test-time scaling has enabled Large Language Models (LLMs) with remarkable reasoning capabilities, particularly in mathematical domains, through intermediate chain-of-thought (CoT) reasoning before generating final answers. However, the specific sources and mechanisms underlying these reasoning capabilities remain insufficiently understood. Optimization reasoning, i.e. finding extrema under constraints, represents a fundamental abstraction that underpins critical applications in planning, control, resource allocation, and prompt search. To systematically evaluate this capability, we introduce ExtremBench, a benchmark dataset for solving mathematical extremal problems, curated from inequality exercises used for Chinese Mathematical Olympiad and transformed into 93 standardized extrema-finding problems. We conduct extensive evaluations across various state-of-the-art open-source model families, including the Qwen3, GPT-OSS, and DeepSeek. Our results reveal that LLMs' extremal-solving reasoning capabilities do not always align with those of current mathematical benchmarks such as AIME25 and MATH-500, with some models showing strong general mathematical reasoning but poor extremal-solving skills, and vice versa. This discrepancy highlights a critical gap in current evaluation practices and suggests that existing benchmarks may not comprehensively capture the full spectrum of mathematical reasoning abilities.

  • 2 authors
·
Oct 14, 2025

PBEBench: A Multi-Step Programming by Examples Reasoning Benchmark inspired by Historical Linguistics

Although many benchmarks evaluate the reasoning abilities of Large Language Models (LLMs) within domains such as mathematics, coding, or data wrangling, few abstract away from domain specifics to examine reasoning as a capability in and of itself. We contribute a novel type of benchmark evaluating the inductive reasoning capabilities of LLMs that is inspired by the forward reconstruction task from historical linguistics but is formulated in an extremely simple, general way (in the form of Programming by Examples). The task involves generating a cascade of simple string rewrite programs to transform a given list of input strings into a list of desired output strings. We present a fully automated pipeline that programmatically generates problems of this type with controllable difficulty, enabling scalable evaluation of reasoning models while avoiding contamination. Using this approach, we construct two benchmarks: PBEBench-Lite, which efficiently stratifies models of varying capabilities, and PBEBench, which requires models to induce programs similar in complexity to those constructed by historical linguists. Our experiments reveal a substantial performance gap between models that leverage test-time compute or LCoT (long chain-of-thought) reasoning and those that do not. Moreover, although recent models show promise, the solve rate for both of them drops below 5% for hard instances of the PBEBench dataset (ground truth cascade lengths of 20 and 30, respectively), falling well short of realistic historical linguistics requirements even with computationally expensive, popular scaling techniques from the PBE and reasoning literature. Additionally, we also study the effectiveness of different scaling strategies and the impact of various hyperparameters on the difficulty of the generated data using gpt-oss-120b, the best-performing open-source model.

  • 9 authors
·
May 29, 2025

PatchRNN: A Deep Learning-Based System for Security Patch Identification

With the increasing usage of open-source software (OSS) components, vulnerabilities embedded within them are propagated to a huge number of underlying applications. In practice, the timely application of security patches in downstream software is challenging. The main reason is that such patches do not explicitly indicate their security impacts in the documentation, which would be difficult to recognize for software maintainers and users. However, attackers can still identify these "secret" security patches by analyzing the source code and generate corresponding exploits to compromise not only unpatched versions of the current software, but also other similar software packages that may contain the same vulnerability due to code cloning or similar design/implementation logic. Therefore, it is critical to identify these secret security patches to enable timely fixes. To this end, we propose a deep learning-based defense system called PatchRNN to automatically identify secret security patches in OSS. Besides considering descriptive keywords in the commit message (i.e., at the text level), we leverage both syntactic and semantic features at the source-code level. To evaluate the performance of our system, we apply it on a large-scale real-world patch dataset and conduct a case study on a popular open-source web server software - NGINX. Experimental results show that the PatchRNN can successfully detect secret security patches with a low false positive rate.

  • 7 authors
·
Aug 6, 2021

PRISM: Pushing the Frontier of Deep Think via Process Reward Model-Guided Inference

DEEPTHINK methods improve reasoning by generating, refining, and aggregating populations of candidate solutions, which enables strong performance on complex mathematical and scientific tasks. However, existing frameworks often lack reliable correctness signals during inference, which creates a population-enhancement bottleneck where deeper deliberation amplifies errors, suppresses correct minority solutions, and yields weak returns to additional compute. In this paper, we introduce a functional decomposition of DEEPTHINK systems and propose PRISM, a Process Reward Model (PRM)-guided inference algorithm that uses step-level verification to guide both population refinement and solution aggregation. During refinement, PRISM treats candidate solutions as particles in a PRM-defined energy landscape and reshapes the population through score-guided resampling and stochastic refinement, which concentrates probability mass on higher-quality reasoning while preserving diversity. Across mathematics and science benchmarks, PRISM is competitive with or outperforms existing DEEPTHINK methods, reaching 90.0%, 75.4%, and 71.4% with gpt-oss-20b on AIME25, HMMT25, and GPQA Diamond, respectively, while matching or exceeding gpt-oss-120b. Additionally, our analysis shows that PRISM produces consistent net-directional correction during refinement, remains reliable when the initial population contains few correct candidates, and often lies on the compute-accuracy Pareto frontier.

  • 4 authors
·
Mar 2 1

VERGE: Formal Refinement and Guidance Engine for Verifiable LLM Reasoning

Despite the syntactic fluency of Large Language Models (LLMs), ensuring their logical correctness in high-stakes domains remains a fundamental challenge. We present a neurosymbolic framework that combines LLMs with SMT solvers to produce verification-guided answers through iterative refinement. Our approach decomposes LLM outputs into atomic claims, autoformalizes them into first-order logic, and verifies their logical consistency using automated theorem proving. We introduce three key innovations: (1) multi-model consensus via formal semantic equivalence checking to ensure logic-level alignment between candidates, eliminating the syntactic bias of surface-form metrics, (2) semantic routing that directs different claim types to appropriate verification strategies: symbolic solvers for logical claims and LLM ensembles for commonsense reasoning, and (3) precise logical error localization via Minimal Correction Subsets (MCS), which pinpoint the exact subset of claims to revise, transforming binary failure signals into actionable feedback. Our framework classifies claims by their logical status and aggregates multiple verification signals into a unified score with variance-based penalty. The system iteratively refines answers using structured feedback until acceptance criteria are met or convergence is achieved. This hybrid approach delivers formal guarantees where possible and consensus verification elsewhere, advancing trustworthy AI. With the GPT-OSS-120B model, VERGE demonstrates an average performance uplift of 18.7% at convergence across a set of reasoning benchmarks compared to single-pass approaches.

Conversational LLMs Simplify Secure Clinical Data Access, Understanding, and Analysis

Large-scale clinical databases offer opportunities for medical research, but their complexity creates barriers to effective use. The Medical Information Mart for Intensive Care (MIMIC-IV), one of the world's largest open-source electronic health record databases, traditionally requires both SQL proficiency and clinical domain expertise. We introduce M3, a system that enables natural language querying of MIMIC-IV data through the Model Context Protocol. With a single command, M3 retrieves MIMIC-IV from PhysioNet, launches a local SQLite instance or connects to hosted BigQuery, and allows researchers to pose clinical questions in plain English. We evaluated M3 using one hundred questions from the EHRSQL 2024 benchmark with two language models: the proprietary Claude Sonnet 4 achieved 94% accuracy, while the open-source gpt-oss-20B (deployable locally on consumer hardware) achieved 93% accuracy. Both models translate natural language into SQL, execute queries against MIMIC-IV, and return structured results alongside the underlying query for verification. Error analysis revealed that most failures stemmed from complex temporal reasoning or ambiguous question phrasing rather than fundamental architectural limitations. The comparable performance of a smaller open-source model demonstrates that privacy-preserving local deployment is viable for sensitive clinical data analysis. M3 lowers technical barriers to critical care data analysis while maintaining security through OAuth2 authentication, query validation, and comprehensive audit logging.

  • 6 authors
·
Jun 27, 2025

MemLoRA: Distilling Expert Adapters for On-Device Memory Systems

Memory-augmented Large Language Models (LLMs) have demonstrated remarkable consistency during prolonged dialogues by storing relevant memories and incorporating them as context. Such memory-based personalization is also key in on-device settings that allow users to keep their conversations and data private. However, memory-augmented systems typically rely on LLMs that are too costly for local on-device deployment. Even though Small Language Models (SLMs) are more suitable for on-device inference than LLMs, they cannot achieve sufficient performance. Additionally, these LLM-based systems lack native visual capabilities, limiting their applicability in multimodal contexts. In this paper, we introduce (i) MemLoRA, a novel memory system that enables local deployment by equipping SLMs with specialized memory adapters, and (ii) its vision extension MemLoRA-V, which integrates small Vision-Language Models (SVLMs) to memory systems, enabling native visual understanding. Following knowledge distillation principles, each adapter is trained separately for specific memory operationsx2013knowledge extraction, memory update, and memory-augmented generation. Equipped with memory adapters, small models enable accurate on-device memory operations without cloud dependency. On text-only operations, MemLoRA outperforms 10times larger baseline models (e.g., Gemma2-27B) and achieves performance comparable to 60times larger models (e.g., GPT-OSS-120B) on the LoCoMo benchmark. To evaluate visual understanding operations instead, we extend LoCoMo with challenging Visual Question Answering tasks that require direct visual reasoning. On this, our VLM-integrated MemLoRA-V shows massive improvements over caption-based approaches (81.3 vs. 23.7 accuracy) while keeping strong performance in text-based tasks, demonstrating the efficacy of our method in multimodal contexts.

  • 6 authors
·
Dec 4, 2025 1

On the Role of Reasoning Patterns in the Generalization Discrepancy of Long Chain-of-Thought Supervised Fine-Tuning

Supervised Fine-Tuning (SFT) on long Chain-of-Thought (CoT) trajectories has become a pivotal phase in building large reasoning models. However, how CoT trajectories from different sources influence the generalization performance of models remains an open question. In this paper, we conduct a comparative study using two sources of verified CoT trajectories generated by two competing models, DeepSeek-R1-0528 and gpt-oss-120b, with their problem sets controlled to be identical. Despite their comparable performance, we uncover a striking paradox: lower training loss does not translate to better generalization. SFT on DeepSeek-R1-0528 data achieves remarkably lower training loss, yet exhibits significantly worse generalization performance on reasoning benchmarks compared to those trained on gpt-oss-120b. To understand this paradox, we perform a multi-faceted analysis probing token-level SFT loss and step-level reasoning behaviors. Our analysis reveals a difference in reasoning patterns. gpt-oss-120b exhibits highly convergent and deductive trajectories, whereas DeepSeek-R1-0528 favors a divergent and branch-heavy exploration pattern. Consequently, models trained with DeepSeek-R1 data inherit inefficient exploration behaviors, often getting trapped in redundant exploratory branches that hinder them from reaching correct solutions. Building upon this insight, we propose a simple yet effective remedy of filtering out frequently branching trajectories to improve the generalization of SFT. Experiments show that training on selected DeepSeek-R1-0528 subsets surprisingly improves reasoning performance by up to 5.1% on AIME25, 5.5% on BeyondAIME, and on average 3.6% on five benchmarks.

  • 9 authors
·
Apr 3

Bag of Tricks for Subverting Reasoning-based Safety Guardrails

Recent reasoning-based safety guardrails for Large Reasoning Models (LRMs), such as deliberative alignment, have shown strong defense against jailbreak attacks. By leveraging LRMs' reasoning ability, these guardrails help the models to assess the safety of user inputs before generating final responses. The powerful reasoning ability can analyze the intention of the input query and will refuse to assist once it detects the harmful intent hidden by the jailbreak methods. Such guardrails have shown a significant boost in defense, such as the near-perfect refusal rates on the open-source gpt-oss series. Unfortunately, we find that these powerful reasoning-based guardrails can be extremely vulnerable to subtle manipulation of the input prompts, and once hijacked, can lead to even more harmful results. Specifically, we first uncover a surprisingly fragile aspect of these guardrails: simply adding a few template tokens to the input prompt can successfully bypass the seemingly powerful guardrails and lead to explicit and harmful responses. To explore further, we introduce a bag of jailbreak methods that subvert the reasoning-based guardrails. Our attacks span white-, gray-, and black-box settings and range from effortless template manipulations to fully automated optimization. Along with the potential for scalable implementation, these methods also achieve alarmingly high attack success rates (e.g., exceeding 90% across 5 different benchmarks on gpt-oss series on both local host models and online API services). Evaluations across various leading open-source LRMs confirm that these vulnerabilities are systemic, underscoring the urgent need for stronger alignment techniques for open-sourced LRMs to prevent malicious misuse. Code is open-sourced at https://chenxshuo.github.io/bag-of-tricks.

  • 9 authors
·
Oct 13, 2025 2