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Encoder, Decoder, NeedleModel β parametric on TransformerConfig.
Key design decisions:
- No FFN (no_feedforward=True is the production default; we never implement it).
- ZCRMSNorm, GQA, RoPE all match architecture.py line-for-line.
- Decoder.step() is ONNX-traceable: no data-dependent control flow.
- Tied embedding: decoder logits = hidden @ embedding.weight.T
"""
import math
import torch
import torch.nn as nn
import torch.nn.functional as F
from .config import TransformerConfig
from .layers import ZCRMSNorm, RoPE, MultiHeadAttention, make_causal_mask
# ---------------------------------------------------------------------------
# EncoderBlock
# ---------------------------------------------------------------------------
class EncoderBlock(nn.Module):
"""Pre-norm self-attention with sigmoid-gated residual.
Matches Flax EncoderBlock.__call__:
gate = sigmoid(attn_gate)
x = ZCRMSNorm(x)
x = self_attn(x, x, ...)
x = residual + gate * attn_out
"""
def __init__(self, config: TransformerConfig):
super().__init__()
# Scalar gate initialized to zero β sigmoid(0) = 0.5
self.attn_gate = nn.Parameter(torch.zeros(()))
self.norm = ZCRMSNorm(config.d_model)
self.self_attn = MultiHeadAttention(config, is_cross_attn=False, is_causal=False)
def forward(self, x: torch.Tensor, mask=None, rope=None):
"""
x: (B, T, d_model)
mask: (B, 1, T, T) bool
rope: (cos, sin) from RoPE buffers
"""
gate = torch.sigmoid(self.attn_gate)
residual = x
x = self.norm(x)
attn_out, _ = self.self_attn(x, x, mask=mask, rope=rope)
x = residual + gate * attn_out
return x
# ---------------------------------------------------------------------------
# DecoderBlock
# ---------------------------------------------------------------------------
class DecoderBlock(nn.Module):
"""Causal self-attn + cross-attn with independent sigmoid-gated residuals.
Matches Flax DecoderBlock.__call__:
self_gate = sigmoid(self_attn_gate)
x = ZCRMSNorm(x) -> self_attn(x, x) -> x = residual + self_gate * out
cross_gate = sigmoid(cross_attn_gate)
x = ZCRMSNorm(x) -> cross_attn(x, encoder_out) -> x = residual + cross_gate * out
"""
def __init__(self, config: TransformerConfig):
super().__init__()
self.self_attn_gate = nn.Parameter(torch.zeros(()))
self.cross_attn_gate = nn.Parameter(torch.zeros(()))
# ZCRMSNorm_0 = pre-norm for self-attn
# ZCRMSNorm_1 = pre-norm for cross-attn
self.self_norm = ZCRMSNorm(config.d_model)
self.cross_norm = ZCRMSNorm(config.d_model)
self.self_attn = MultiHeadAttention(config, is_cross_attn=False, is_causal=True)
self.cross_attn = MultiHeadAttention(config, is_cross_attn=True, is_causal=False)
def forward(
self,
x: torch.Tensor,
encoder_out: torch.Tensor,
self_mask=None,
cross_mask=None,
rope=None,
past_self_kv=None,
):
"""
Args:
x: (B, T_dec, d_model)
encoder_out: (B, T_enc, d_model)
self_mask: (B, 1, T_dec, T_total) bool
cross_mask: (B, 1, T_dec, T_enc) bool
rope: (cos, sin) for self-attention RoPE
past_self_kv: (k, v) each (B, num_kv_heads, past_T, head_dim)
Returns:
x: (B, T_dec, d_model)
present_self_kv: (k, v) each (B, num_kv_heads, T_total, head_dim)
"""
# --- Causal self-attention ---
self_gate = torch.sigmoid(self.self_attn_gate)
residual = x
x = self.self_norm(x)
self_out, present_self_kv = self.self_attn(
x, x, mask=self_mask, rope=rope, past_kv=past_self_kv
)
x = residual + self_gate * self_out
# --- Cross-attention ---
cross_gate = torch.sigmoid(self.cross_attn_gate)
residual = x
x = self.cross_norm(x)
cross_out, _ = self.cross_attn(x, encoder_out, mask=cross_mask)
x = residual + cross_gate * cross_out
return x, present_self_kv
# ---------------------------------------------------------------------------
# Encoder
# ---------------------------------------------------------------------------
class Encoder(nn.Module):
"""Embedding lookup + N EncoderBlocks + final ZCRMSNorm.
Returns encoder hidden states: (B, T_enc, d_model).
Note: embedding is shared with Decoder and set externally via .embedding.
"""
def __init__(self, config: TransformerConfig):
super().__init__()
self.config = config
# Embedding is shared; the NeedleModel assigns it after construction.
self.embedding: nn.Embedding | None = None
self.embed_scale = math.sqrt(config.d_model)
self.layers = nn.ModuleList([
EncoderBlock(config) for _ in range(config.num_encoder_layers)
])
self.final_norm = ZCRMSNorm(config.d_model)
head_dim = config.d_model // config.num_heads
self.rope = RoPE(head_dim, config.max_seq_len, config.rope_theta)
def forward(self, input_ids: torch.Tensor, mask=None) -> torch.Tensor:
"""
input_ids: (B, T_enc) long
mask: (B, 1, 1, T_enc) bool padding mask (optional)
Returns: (B, T_enc, d_model)
"""
assert self.embedding is not None, "Encoder.embedding must be set by NeedleModel"
x = self.embedding(input_ids) * self.embed_scale
T = input_ids.shape[1]
cos, sin = self.rope.get_cos_sin(T)
rope = (cos, sin)
for layer in self.layers:
x = layer(x, mask=mask, rope=rope)
x = self.final_norm(x)
return x
# ---------------------------------------------------------------------------
# Decoder
# ---------------------------------------------------------------------------
class Decoder(nn.Module):
"""Embedding lookup + N DecoderBlocks + final ZCRMSNorm + LM head.
The LM head is a tied projection: logits = hidden @ embedding.weight.T
The embedding weight is shared with the Encoder/NeedleModel.
"""
def __init__(self, config: TransformerConfig):
super().__init__()
self.config = config
# Embedding is shared; set by NeedleModel after construction.
self.embedding: nn.Embedding | None = None
self.embed_scale = math.sqrt(config.d_model)
self.layers = nn.ModuleList([
DecoderBlock(config) for _ in range(config.num_decoder_layers)
])
# ZCRMSNorm_0 in the decoder (final norm after all layers)
self.final_norm = ZCRMSNorm(config.d_model)
head_dim = config.d_model // config.num_heads
self.rope = RoPE(head_dim, config.max_seq_len, config.rope_theta)
def forward(
self,
input_ids: torch.Tensor,
encoder_out: torch.Tensor,
self_mask=None,
cross_mask=None,
) -> torch.Tensor:
"""Full-sequence decode (training / teacher-forcing).
Args:
input_ids: (B, T_dec) long
encoder_out: (B, T_enc, d_model)
self_mask: (B, 1, T_dec, T_dec) bool causal mask
cross_mask: (B, 1, T_dec, T_enc) bool
Returns:
logits: (B, T_dec, vocab_size)
"""
assert self.embedding is not None
x = self.embedding(input_ids) * self.embed_scale
T = input_ids.shape[1]
cos, sin = self.rope.get_cos_sin(T)
rope = (cos, sin)
for layer in self.layers:
x, _ = layer(x, encoder_out, self_mask=self_mask, cross_mask=cross_mask,
rope=rope, past_self_kv=None)
x = self.final_norm(x)
# Tied output projection: (B, T, d_model) @ (d_model, vocab_size)
logits = x.float() @ self.embedding.weight.T
return logits
# ------------------------------------------------------------------
# Autoregressive step β the entry point for ONNX export (Task 7)
# ------------------------------------------------------------------
def initial_past_kv(self, batch: int = 1) -> torch.Tensor:
"""Return a zero past_kv tensor for the first step.
Shape: (num_decoder_layers, 2, batch, num_kv_heads, 0, head_dim)
Using length-0 in the sequence dimension so the first step's cat
produces just the current step's KV.
"""
cfg = self.config
head_dim = cfg.d_model // cfg.num_heads
return torch.zeros(
cfg.num_decoder_layers, 2, batch, cfg.num_kv_heads, 0, head_dim,
dtype=torch.float32,
)
def step(
self,
decoder_input_ids: torch.Tensor,
encoder_kv: torch.Tensor,
past_self_kv: torch.Tensor,
):
"""Single autoregressive decoder step.
Accepts explicit past KV cache and returns updated KV (present).
This signature is what torch.onnx.export traces in Task 7.
Args:
decoder_input_ids: (B, 1) long β single token per step
encoder_kv: (B, T_enc, d_model) β frozen encoder output
past_self_kv: (num_decoder_layers, 2, B, num_kv_heads, past_T, head_dim)
Use initial_past_kv() for the first step.
Returns:
logits: (B, 1, vocab_size)
present_kv: (num_decoder_layers, 2, B, num_kv_heads, past_T+1, head_dim)
NOTE: No Python control flow that depends on tensor *values* β only
shape-derived constants β so this is safely ONNX-traceable.
"""
assert self.embedding is not None
B = decoder_input_ids.shape[0]
x = self.embedding(decoder_input_ids) * self.embed_scale # (B, 1, d_model)
# RoPE for this one position: offset by past_T
past_T = past_self_kv.shape[4]
# We use position (past_T) for the current token.
# Slice cos/sin at that single position: (1, head_dim//2)
cos_full, sin_full = self.rope.get_cos_sin(past_T + 1)
cos = cos_full[past_T:past_T + 1] # (1, head_dim//2)
sin = sin_full[past_T:past_T + 1]
rope = (cos, sin)
# Causal mask: shape (1, 1, 1, past_T+1) β current token attends all past+self
self_mask = make_causal_mask(1, past_T, device=x.device) # (1,1,1, past_T+1)
present_layers = []
for i, layer in enumerate(self.layers):
# Unpack this layer's past KV: each (B, num_kv_heads, past_T, head_dim)
layer_past_k = past_self_kv[i, 0] # (B, num_kv_heads, past_T, head_dim)
layer_past_v = past_self_kv[i, 1]
layer_past = (layer_past_k, layer_past_v)
x, (k_new, v_new) = layer(
x, encoder_kv,
self_mask=self_mask,
cross_mask=None,
rope=rope,
past_self_kv=layer_past,
)
# k_new, v_new: (B, num_kv_heads, past_T+1, head_dim)
present_layers.append(torch.stack([k_new, v_new], dim=0)) # (2, B, nkv, T+1, hd)
# Stack layers: (num_decoder_layers, 2, B, num_kv_heads, past_T+1, head_dim)
present_kv = torch.stack(present_layers, dim=0)
x = self.final_norm(x)
logits = x.float() @ self.embedding.weight.T # (B, 1, vocab_size)
return logits, present_kv
# ---------------------------------------------------------------------------
# NeedleModel
# ---------------------------------------------------------------------------
class NeedleModel(nn.Module):
"""Top-level Needle Simple Attention Network β PyTorch port.
Mirrors SimpleAttentionNetwork (Flax).
Parameters
----------
config : TransformerConfig
Architecture hyperparameters. Pass production dims to get the 26M model.
"""
def __init__(self, config: TransformerConfig):
super().__init__()
self.config = config
# Shared embedding (tied output projection in decoder)
self.embedding = nn.Embedding(config.vocab_size, config.d_model)
nn.init.normal_(self.embedding.weight, std=0.02)
self.encoder = Encoder(config)
self.decoder = Decoder(config)
# Wire up shared embedding
self.encoder.embedding = self.embedding
self.decoder.embedding = self.embedding
# Contrastive head β present in the Flax param tree
# contrastive_hidden: (d_model, d_model//4) with bias
self.contrastive_hidden = nn.Linear(config.d_model, config.d_model // 4, bias=True)
# contrastive_proj: (d_model//4, contrastive_dim) no bias
self.contrastive_proj = nn.Linear(config.d_model // 4, config.contrastive_dim, bias=False)
# Scalar contrastive temperature
self.log_temp = nn.Parameter(torch.zeros(()))
def forward(
self,
src: torch.Tensor,
tgt: torch.Tensor,
src_mask=None,
tgt_mask=None,
cross_mask=None,
) -> torch.Tensor:
"""Full encoder-decoder forward pass (training).
Returns logits: (B, T_dec, vocab_size)
"""
encoder_out = self.encoder(src, mask=src_mask)
logits = self.decoder(tgt, encoder_out, self_mask=tgt_mask, cross_mask=cross_mask)
return logits
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