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README.md
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---
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license: mit
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tags:
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- astronomy
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- time-series
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- light-curves
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- onnx
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library_name: onnx
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---
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# Astromer 1
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## Paper
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Donoso-Oliva, C., Becker, I., Protopapas, P., Cabrera-Vives, G., Forster, F., & Estévez, P. A. (2023). *ASTROMER: A transformer-based embedding for the representation of light curves*. Astronomy & Astrophysics, 670, A54.
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```bibtex
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@article{astromer1,
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author = {Donoso-Oliva, C. and Becker, I. and Protopapas, P. and
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Cabrera-Vives, G. and Forster, F. and Est{\'e}vez, P. A.},
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title = {{ASTROMER}: A transformer-based embedding for the representation
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of light curves},
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journal = {Astronomy \& Astrophysics},
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volume = {670},
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pages = {A54},
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year = {2023},
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doi = {10.1051/0004-6361/202243928},
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}
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```
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## Original code
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<https://github.com/astromer-science/main-code> (Astromer v1 tag)
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## License
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MIT — see [LICENSE](LICENSE).
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## Model overview
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Astromer 1 is a transformer encoder pretrained on MACHO R-band light curves via
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masked magnitude prediction. It maps irregularly-sampled photometric time series
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to per-timestep contextual embeddings using an MJD-aware sinusoidal positional
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encoding. The architecture uses 2 transformer layers, 4 attention heads, and a
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head dimension of 64, producing 256-dimensional embeddings.
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## Inputs
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All tensors are `float32`. Magnitudes must be **zero-mean normalized** before
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passing to the model (subtract the per-light-curve mean magnitude).
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| Tensor | Shape | Description |
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|--------|-------|-------------|
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| `input` | `[batch, 200, 1]` | Zero-mean normalized magnitudes |
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| `times` | `[batch, 200, 1]` | Observation times in MJD |
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| `mask_in` | `[batch, 200, 1]` | 1 = valid observation, 0 = padded position |
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## Outputs (ONNX)
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| File | Output shape | Aggregation |
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|------|-------------|-------------|
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| `astromer1_mean.onnx` | `[batch, 256]` | Masked mean pooling over valid timesteps |
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| `astromer1_max.onnx` | `[batch, 256]` | Masked max pooling over valid timesteps |
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| `astromer1_full.onnx` | `[batch, 200, 256]` | Full per-timestep sequence |
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ONNX opset: 13.
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## Preprocessing steps
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1. **Collect** MJD observation times and magnitudes for each light curve.
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2. **Zero-mean normalize** magnitudes: subtract the mean magnitude of each light curve individually (`mag -= mag.mean()`).
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3. **Truncate** each light curve to at most 200 observations (take the first 200 if longer).
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4. **Pad** shorter light curves to exactly 200 positions: append zeros to both `input` and `times`.
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5. **Build the mask**: set `mask_in = 1` for real observations, `mask_in = 0` for padded positions.
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6. **Reshape** each tensor to `[batch, 200, 1]` (add trailing dimension).
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The sequence length is fixed at 200 by the pretrained weights.
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## Weights
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Source: [Zenodo record 18207945](https://zenodo.org/records/18207945)
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Training dataset: MACHO R-band light curves
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