Delete alpha_factory/infra/rag.py, alpha_factory/infra/rag.py
Browse files- alpha_factory/infra/rag.py +0 -140
alpha_factory/infra/rag.py
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"""
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RAG System — ChromaDB + arXiv paper indexer.
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Retrieves relevant academic papers for the Hypothesis Hunter.
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"""
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import os
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from pathlib import Path
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from typing import Optional
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class PaperRAG:
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"""
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RAG retrieval over arXiv q-fin papers.
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Uses ChromaDB for vector storage + bge-small for embeddings.
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"""
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def __init__(self, persist_dir: Path, collection_name: str = "qfin_papers"):
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try:
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import chromadb
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self.client = chromadb.PersistentClient(path=str(persist_dir))
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self.collection = self.client.get_or_create_collection(
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name=collection_name,
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metadata={"hnsw:space": "cosine"},
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)
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self._available = True
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except ImportError:
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self._available = False
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print("[WARN] chromadb not installed — RAG disabled. pip install chromadb")
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@property
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def available(self) -> bool:
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return self._available
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def index_papers(self, papers: list[dict]):
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"""
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Index papers into ChromaDB.
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Each paper: {"id": "arxiv_id", "title": "...", "abstract": "...", "categories": [...]}
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"""
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if not self._available:
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return
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ids = [p["id"] for p in papers]
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documents = [f"{p['title']}\n\n{p['abstract']}" for p in papers]
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metadatas = [{"title": p["title"], "categories": ",".join(p.get("categories", []))} for p in papers]
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# Batch insert (ChromaDB handles embedding automatically with default model)
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batch_size = 100
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for i in range(0, len(ids), batch_size):
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self.collection.upsert(
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ids=ids[i:i+batch_size],
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documents=documents[i:i+batch_size],
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metadatas=metadatas[i:i+batch_size],
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)
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def retrieve(self, query: str, n_results: int = 3) -> list[str]:
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"""
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Retrieve top-N relevant paper abstracts for a given theme/query.
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Returns list of formatted paper strings.
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"""
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if not self._available or self.collection.count() == 0:
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return []
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results = self.collection.query(
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query_texts=[query],
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n_results=n_results,
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)
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papers = []
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if results["documents"] and results["documents"][0]:
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for doc, meta in zip(results["documents"][0], results["metadatas"][0]):
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papers.append(f"[{meta.get('title', 'Unknown')}]\n{doc[:500]}")
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return papers
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def count(self) -> int:
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"""Number of indexed papers."""
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if not self._available:
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return 0
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return self.collection.count()
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async def fetch_arxiv_papers(
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categories: list[str] = ["q-fin.PM", "q-fin.ST", "q-fin.CP", "stat.AP"],
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max_results: int = 500,
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start_year: int = 2021,
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) -> list[dict]:
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"""
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Fetch papers from arXiv API.
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Returns list of {id, title, abstract, categories, published}.
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"""
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import asyncio
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import aiohttp
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from xml.etree import ElementTree as ET
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base_url = "http://export.arxiv.org/api/query"
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papers = []
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for cat in categories:
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query = f"cat:{cat}"
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params = {
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"search_query": query,
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"start": 0,
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"max_results": max_results // len(categories),
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"sortBy": "submittedDate",
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"sortOrder": "descending",
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}
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try:
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async with aiohttp.ClientSession() as session:
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async with session.get(base_url, params=params) as resp:
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if resp.status != 200:
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continue
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text = await resp.text()
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# Parse XML
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ns = {"atom": "http://www.w3.org/2005/Atom", "arxiv": "http://arxiv.org/schemas/atom"}
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root = ET.fromstring(text)
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for entry in root.findall("atom:entry", ns):
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arxiv_id = entry.find("atom:id", ns).text.split("/")[-1]
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title = entry.find("atom:title", ns).text.strip().replace("\n", " ")
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abstract = entry.find("atom:summary", ns).text.strip().replace("\n", " ")
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published = entry.find("atom:published", ns).text[:10]
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cats = [c.attrib["term"] for c in entry.findall("arxiv:primary_category", ns)]
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papers.append({
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"id": arxiv_id,
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"title": title,
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"abstract": abstract,
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"categories": cats,
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"published": published,
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})
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# Rate limit arxiv API
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await asyncio.sleep(3)
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except Exception as e:
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print(f"[WARN] arXiv fetch failed for {cat}: {e}")
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return papers
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