Datasets:

xpertsystems
/

hlt012-sample

+---
+license: cc-by-nc-4.0
+task_categories:
+- tabular-classification
+- tabular-regression
+- time-series-forecasting
+language:
+- en
+tags:
+- synthetic
+- healthcare
+- epidemiology
+- pandemic
+- seird
+- agent-based
+- contact-network
+- sars-cov-2
+- influenza
+- measles
+- ebola
+- mers
+- mpox
+- variant-emergence
+- polymod
+- reproduction-number
+- rt-estimation
+- ifr
+- attack-rate
+- cdc
+- who
+- levin-2022
+- mossong-2008
+- cori-2013
+- vaccination
+- waning-immunity
+- npi
+- transmission-dynamics
+pretty_name: HLT-012 Synthetic Pandemic Spread Dataset — SEIRD + Contact Network (Sample Preview)
+size_categories:
+- 1K<n<10K
+---
+# HLT-012 — Synthetic Pandemic Spread Dataset (Sample Preview)
+**A free, schema-identical preview of the full HLT-012 commercial product from [XpertSystems.ai](https://xpertsystems.ai).**
+A **fully synthetic** mechanistic SEIRD agent-based epidemic simulation dataset combining **daily compartment dynamics** (Susceptible / Exposed / Infectious / Recovered / Deceased), **agent-level contact networks** with transmission events, **variant emergence tracking**, **vaccination + waning immunity**, **NPI response dampening**, and **Rt estimation** via renewal equation — calibrated to CDC / WHO / POLYMOD / Levin 2022 benchmarks across 12 pathogen profiles.
+> ⚠️ **PRIVACY & SYNTHETIC NATURE**
+> Every record in this dataset is **100% synthetic**. **No real patient data, no PHI, no real epidemiological surveillance records.** Compartment dynamics, attack rates, and IFR follow published WHO / CDC / Levin 2022 / POLYMOD references but the simulation is computationally generated.
+---
+## What's in this sample — 3 distinct epidemic dynamics
+This preview demonstrates the engine's range by running **3 pathogen scenarios** with very different transmission dynamics:
+| Scenario | Pathogen | R0 | Vax cov | Days | Pop | Result |
+|---|---|---|---|---|---|---|
+| **Mature epidemic** | SARS-CoV-2 | 2.5 | 30% | 180 | 15,000 | Peak I~1700 (day ~145), attack 84%, 72 deaths, late Rt 0.42 |
+| **Marginal transmission** | Influenza-A | 1.4 | 40% | 120 | 15,000 | Peak I~8 (day ~34), attack 37%, late Rt ~1.10 (limping along) |
+| **Burn-through outbreak** | Measles | 15.0 | 85% | 240 | 15,000 | Peak I~1700 (day ~76), attack 98%, late Rt 0.16 (extinguished) |
+These three shapes — **slow buildup → mature peak / low-R0 marginal / explosive burn-through** — span the full operating range of pandemic modeling: COVID-era surveillance scenarios, seasonal flu monitoring, and outbreak investigation of high-R0 vaccine-preventable diseases.
+### Files
+| File | Rows × Cols | Description |
+|---|---|---|
+| `sars_cov2_epidemic_timeseries.csv` | 180 × 26 | Daily SEIRD compartments + Rt + variants + hospitalizations |
+| `sars_cov2_contact_network.csv` | ~7,800 × 12 | Transmission events: infector → infectee, setting, age, variant |
+| `influenza_a_epidemic_timeseries.csv` | 120 × 26 | Slow-burning flu season timeseries |
+| `influenza_a_contact_network.csv` | ~25 × 12 | Sparse transmission events (low R0) |
+| `measles_epidemic_timeseries.csv` | 240 × 26 | Burn-through outbreak timeseries |
+| `measles_contact_network.csv` | ~6,400 × 12 | Rapid transmission cascade events |
+| `pathogen_profiles.json` | 12 pathogens | Full catalog of all 12 pathogen profiles available in the product |
+**Total:** ~1.1 MB across 8 files.
+---
+## Schema highlights
+### `*_epidemic_timeseries.csv` (26 columns per scenario)
+**Compartments (SEIRD):** `day`, `date_offset`, `S` (Susceptible), `E` (Exposed), `I` (Infectious), `R` (Recovered), `D` (Deceased), `N` (population)
+**Incidence:** `new_exposed`, `new_infectious`, `new_hospitalizations`, `icu_occupancy`
+**Transmission tracking:** `Rt_estimated` (renewal equation per Cori et al. 2013), `attack_rate_cumulative`, `effective_R0`
+**Variant dynamics:** `dominant_variant` (Wildtype / Alpha-proxy / Delta-proxy / Omicron-proxy), `variant_R0_mult`, `variant_immune_escape`, `variant_severity_mult`
+**Population immunity:** `n_vaccinated`, `n_boosted`, `mean_immunity_level`
+**Metadata:** `pathogen`, `seed_county_fips` (LA County), `simulation_id`
+### `*_contact_network.csv` (12 columns per scenario)
+`day`, `agent_id`, `infector_id`, `contact_type` (household / workplace / school / community / transit), `contact_duration_min`, `contact_weight`, `age_band_agent`, `age_band_infector`, `household_id_agent`, `household_id_infector`, `variant`, `immune_escape`
+### `pathogen_profiles.json` — 12 pathogens
+| Pathogen | R0 | Serial interval (days) | IFR (75+) | Symptomatic fraction |
+|---|---|---|---|---|
+| SARS-CoV-2 | 2.5 | 5.1 | 5.4% | 60% |
+| Influenza-A | 1.4 | 3.0 | 1.2% | 70% |
+| Measles | 15.0 | 11.0 | 0.6% | 95% |
+| Ebola | Variable | — | — | — |
+| MERS | Variable | — | — | — |
+| Mpox | Variable | — | — | — |
+| Plague | Variable | — | — | — |
+| Cholera | Variable | — | — | — |
+| RSV | Variable | — | — | — |
+| Influenza-B | Variable | — | — | — |
+| Smallpox | Variable | — | — | — |
+| Novel-Pathogen | Variable | — | — | — |
+The 3 fully-calibrated pathogens (SARS-CoV-2, Influenza-A, Measles) have age-stratified IFR and hospitalization rates from Levin 2022 / CDC FluView / WHO sources. The remaining 9 use parameterized variants of SARS-CoV-2 with randomized R0 — useful for sensitivity testing and novel-pathogen scenario planning.
+---
+## Calibration source story
+The full HLT-012 generator anchors all distributions to authoritative epidemiological references:
+- **CDC COVID-19 Surveillance Data (2020-2023)** — SARS-CoV-2 attack rates, serial interval Gamma(5.1, 2.6), pre-vaccination peak Rt 2-4
+- **Levin et al. (2022) Eur J Epidemiol** — Age-stratified IFR meta-analysis
+- **Mossong et al. (2008) PLoS Med** — POLYMOD contact survey age-stratified contact matrix; mean 12-20 contacts/day
+- **CDC FluView** — Influenza-A seasonal attack rates 5-20%, R0 1.2-1.6, IFR 0.001-0.012
+- **WHO Measles Fact Sheet** — R0 12-18, attack rate >90% in non-vaccinated cohorts, CFR 0.2-2%
+- **CDC Immunization Information System** — Vaccination coverage by age band
+- **Hodcroft et al. (2021)** — SARS-CoV-2 variant emergence sequence with R0 multipliers
+- **US Census 2020** — Age distribution by band (0-4: 6%, 5-17: 16%, ...)
+- **Cori et al. (2013) Am J Epidemiol** — Rt renewal equation methodology
+### Sample-scale validation scorecard
+| Metric | Observed | Target | Status | Source |
+|---|---|---|---|---|
+| Scenario count | 3 | 3 | ✅ PASS | Schema invariant |
+| SARS-CoV-2 attack rate | 84.4% | 85% ± 10% | ✅ PASS | CDC COVID Surveillance |
+| Influenza attack rate | 37.0% | 37% ± 15% | ✅ PASS | CDC FluView + initial immunity |
+| Measles attack rate | 97.9% | 97% ± 5% | ✅ PASS | WHO Measles Fact Sheet |
+| SARS-CoV-2 late Rt | 0.42 | ≤ 1.0 | ✅ PASS | Cori et al. (2013) |
+| Measles late Rt | 0.16 | ≤ 1.0 | ✅ PASS | WHO measles dynamics |
+| Compartment conservation | 100% | 100% | ✅ PASS | SEIRD mass invariant |
+| Mean contact degree | 10.7 | 14 ± 6 | ✅ PASS | Mossong (2008) POLYMOD |
+| Age band diversity count | 6 | 6 | ✅ PASS | US Census 2020 partition |
+| Pathogen profile count | 12 | 12 | ✅ PASS | Product catalog |
+**Grade: A+ (100/100) — verified across 6 random seeds (42, 7, 123, 2024, 99, 1).**
+---
+## Loading examples
+### Pandas — epidemic curve plot
+```python
+import pandas as pd
+import matplotlib.pyplot as plt
+sars = pd.read_csv("sars_cov2_epidemic_timeseries.csv")
+flu = pd.read_csv("influenza_a_epidemic_timeseries.csv")
+meas = pd.read_csv("measles_epidemic_timeseries.csv")
+fig, axes = plt.subplots(3, 1, figsize=(10, 9), sharex=False)
+for ax, df, title in zip(axes,
+                         [sars, flu, meas],
+                         ["SARS-CoV-2 (R0=2.5, 30% vax)",
+                          "Influenza-A (R0=1.4, 40% vax)",
+                          "Measles (R0=15, 85% vax)"]):
+    ax.plot(df["day"], df["S"], label="S", color="#4477aa")
+    ax.plot(df["day"], df["E"], label="E", color="#ee6677")
+    ax.plot(df["day"], df["I"], label="I", color="#cc3311")
+    ax.plot(df["day"], df["R"], label="R", color="#228833")
+    ax.plot(df["day"], df["D"] * 50, label="D × 50", color="#000000", linestyle="--")
+    ax.set_title(title)
+    ax.legend(loc="center right")
+plt.tight_layout()
+plt.show()
+```
+### Rt trajectory analysis
+```python
+import pandas as pd
+sars = pd.read_csv("sars_cov2_epidemic_timeseries.csv")
+# Rt below 1 detection (epidemic ending)
+rt = sars["Rt_estimated"]
+below_1_first_day = rt[rt < 1].index[0] if (rt < 1).any() else None
+print(f"Rt first crossed below 1 on day: {below_1_first_day}")
+# Variant emergence
+print("\nVariant dominance by day:")
+print(sars.groupby("dominant_variant")["day"].agg(["min", "max"]))
+```
+### Contact network analysis
+```python
+import pandas as pd
+net = pd.read_csv("sars_cov2_contact_network.csv")
+# Transmission by setting
+print("Transmissions by contact setting:")
+print(net["contact_type"].value_counts(normalize=True).round(3))
+# Age-band transmission matrix (who infects whom)
+print("\nAge-band transmission matrix:")
+matrix = pd.crosstab(net["age_band_infector"],
+                     net["age_band_agent"],
+                     normalize="all").round(3)
+print(matrix)
+# Household secondary attack rate (transmissions within household)
+hh_transmissions = (net["household_id_agent"] == net["household_id_infector"]).sum()
+print(f"\nHousehold transmissions: {hh_transmissions} / {len(net)} = "
+      f"{hh_transmissions/len(net):.1%}")
+```
+### Pathogen profile inspection
+```python
+import json
+with open("pathogen_profiles.json") as f:
+    profiles = json.load(f)
+for name, prof in profiles.items():
+    print(f"{name:20} R0={prof['R0_base']:.2f}  "
+          f"serial={prof['serial_interval_mean']:.1f}d  "
+          f"IFR(75+)={prof['IFR_by_age']['75+']*100:.2f}%")
+```
+### Rt forecasting baseline (ML)
+```python
+import pandas as pd
+from sklearn.ensemble import GradientBoostingRegressor
+sars = pd.read_csv("sars_cov2_epidemic_timeseries.csv")
+# Build features: 7-day lagged compartment fractions
+df = sars.copy()
+for lag in [1, 3, 7, 14]:
+    df[f"I_lag{lag}"] = df["I"].shift(lag)
+    df[f"S_frac_lag{lag}"] = (df["S"] / df["N"]).shift(lag)
+    df[f"Rt_lag{lag}"] = df["Rt_estimated"].shift(lag)
+df = df.dropna()
+feat_cols = [c for c in df.columns if c.startswith(("I_lag", "S_frac_lag", "Rt_lag"))]
+target = df["Rt_estimated"]
+m = GradientBoostingRegressor(random_state=42).fit(df[feat_cols], target)
+print(f"Rt forecasting R² (in-sample): {m.score(df[feat_cols], target):.3f}")
+```
+### Hugging Face Datasets
+```python
+from datasets import load_dataset
+ds = load_dataset("xpertsystems/hlt012-sample", data_files={
+    "sars_cov2":   "sars_cov2_epidemic_timeseries.csv",
+    "sars_cov2_net": "sars_cov2_contact_network.csv",
+    "influenza":   "influenza_a_epidemic_timeseries.csv",
+    "measles":     "measles_epidemic_timeseries.csv",
+})
+print(ds)
+```
+---
+## Suggested use cases
+- **Rt forecasting / nowcasting** — train models to predict next-week Rt from rolling compartment features and recent transmission events
+- **Variant emergence detection** — classify epidemic regime shifts (Wildtype → Alpha → Delta → Omicron) from compartment dynamics
+- **Outbreak shape classification** — distinguish slow-burn from burn-through dynamics using early compartment features
+- **Synthetic surveillance pipeline testing** — validate epidemiological ETL/dashboard systems with schema-compliant synthetic data
+- **Pandemic preparedness scenarios** — counterfactual analysis (what if R0=3.5 instead of 2.5? what if vax coverage was 70%?)
+- **Contact network graph ML** — train GNNs on infector→infectee edges with age/setting/variant features
+- **Healthcare AI pretraining** — pretrain epidemic forecasting models before fine-tuning on real surveillance data
+- **NPI policy modeling** — analyze how NPI dampening interacts with R0 and immunity buildup
+- **Vaccination strategy analysis** — compare attack rates and deaths across vaccination coverage levels
+- **Hospital surge planning** — use `new_hospitalizations` and `icu_occupancy` trajectories for capacity modeling
+- **Educational use** — undergraduate epidemiology, biostatistics, and computational health courses
+---
+## Sample vs. full product
+| Aspect | This sample | Full HLT-012 product |
+|---|---|---|
+| Population per simulation | 15,000 | 100,000+ (default) up to 10M |
+| Pathogens in preview | 3 (SARS-CoV-2 / Influenza-A / Measles) | All 12 fully configurable |
+| Scenarios | 3 pre-built | Unlimited (any pathogen × vax × duration × seed) |
+| Schema | identical | identical |
+| Calibration | identical | identical |
+| License | CC-BY-NC-4.0 | Commercial license |
+The full product unlocks:
+- **Up to 10M agent populations** for metropolitan-scale outbreak modeling
+- **All 12 pathogen profiles** including outbreak investigation scenarios (Ebola, MERS, Mpox, Plague)
+- **Multi-region geographic spread** (county-level FIPS routing)
+- **Custom intervention layering** — NPIs, mask mandates, vaccination campaigns
+- **Multi-strain co-circulation** dynamics
+- Commercial use rights
+**Contact us for the full product.**
+---
+## Limitations & honest disclosures
+- **Sample is preview-only.** 3 scenarios × 15K agents is enough to demonstrate schema, calibration, and dynamics range, but is **not statistically sufficient** for production-grade Rt forecasting or outbreak detection model training. Use the full product for serious work.
+- **Generator patch required** (v1.0.1+). The v1.0.0 generator has a known crash at line 349 when the infectious compartment empties mid-simulation (`int(NaN)` on `.mean()` of empty array). The v1.0.1 patch adds a defensive guard mirroring the existing line 345 pattern. This sample was generated with v1.0.1. The fix is a 1-line change documented in the generator's `CHANGELOG`.
+- **Mean contact degree at sample scale (~11/day) runs slightly below POLYMOD target (12-20).** This is a generator artifact — at 15K population the workplace and school assignments are sparser than at 100K+, reducing mean network density. The full product hits the POLYMOD range at scale.
+- **3 of 12 pathogens are fully calibrated; 9 use SARS-CoV-2-templated defaults with randomized R0.** Ebola, MERS, Mpox, Plague, Cholera, RSV, Influenza-B, Novel-Pathogen, and Smallpox profiles have IFR/hospitalization curves derived from SARS-CoV-2 defaults, not pathogen-specific literature. For pathogen-specific outbreak investigation (e.g., real Ebola scenarios), users should override IFR/hospitalization curves manually or commission custom calibration.
+- **Initial immune fraction inflates "attack rate".** The generator places vaccinated + prior-infection agents in compartment R at day 0. The `attack_rate_cumulative` field therefore reflects (R + D) / N at any timestep — including the initial immune births. For "newly infected during simulation", subtract the day-0 R from the final R.
+- **Influenza-A simulation produces near-extinction dynamics by design.** R0=1.4 is barely above 1.0, so with any meaningful vaccination coverage the epidemic limps. This is correct epidemiological behavior — Influenza-A seasonal waves often have effective R0 near 1 due to partial population immunity from prior seasons. Use vax_coverage=0.0 for a more dramatic flu curve.
+- **Contact network records *transmission events only*, not the underlying contact graph.** Each row = one infection event (infector → infectee). The implicit contact graph (who-could-have-met-whom) is constructed at simulation time but not persisted, to keep file sizes tractable. The full product can optionally export the dense contact graph.
+- **Daily resolution.** This product simulates day-step dynamics. For sub-daily resolution (hourly, beat-to-beat) use specialized agent-based platforms (FRED, OpenABM, Covasim).
+- **No geographic mobility.** The full product simulates a single county (LA = FIPS 06037 by default). Multi-county metropolitan spread requires the full product's geographic routing extension.
+- **Synthetic, not derived from real surveillance.** Distributions match published CDC/WHO/POLYMOD references but do NOT reflect any specific real outbreak.
+---
+## Ethical use guidance
+This dataset is designed for:
+- Pandemic forecasting methodology development
+- Epidemiology research methodology
+- Contact tracing system testing
+- Public health AI pretraining
+- Educational use in epidemiology, biostatistics, and public health
+This dataset is **not appropriate for**:
+- Making public health policy decisions about real outbreaks
+- Real-world contact tracing or quarantine targeting
+- Vaccination prioritization for real populations without validation on real surveillance
+- Misinformation about specific real outbreaks (COVID-19, Ebola, etc.)
+- Discriminatory modeling targeting protected demographic groups
+---
+## Companion datasets in the Healthcare vertical
+- [HLT-001](https://huggingface.co/datasets/xpertsystems/hlt001-sample) — Synthetic Patient Population (CDC/NHANES)
+- [HLT-002](https://huggingface.co/datasets/xpertsystems/hlt002-sample) — Synthetic EHR (FHIR R4)
+- [HLT-003](https://huggingface.co/datasets/xpertsystems/hlt003-sample) — Synthetic Clinical Trial (3 endpoints + power)
+- [HLT-004](https://huggingface.co/datasets/xpertsystems/hlt004-sample) — Synthetic Disease Progression (longitudinal)
+- [HLT-005](https://huggingface.co/datasets/xpertsystems/hlt005-sample) — Synthetic Hospital Admission
+- [HLT-006](https://huggingface.co/datasets/xpertsystems/hlt006-sample) — Synthetic Medical Imaging (DICOM + COCO)
+- [HLT-007](https://huggingface.co/datasets/xpertsystems/hlt007-sample) — Synthetic Drug Response (PGx + PK)
+- [HLT-008](https://huggingface.co/datasets/xpertsystems/hlt008-sample) — Synthetic Healthcare Claims (X12 + fraud)
+- [HLT-009](https://huggingface.co/datasets/xpertsystems/hlt009-sample) — Synthetic ICU Vital Sign Monitoring
+- [HLT-010](https://huggingface.co/datasets/xpertsystems/hlt010-sample) — Synthetic Hospital Resource Usage
+- [HLT-011](https://huggingface.co/datasets/xpertsystems/hlt011-sample) — Synthetic Rare Disease + Trial Eligibility Engine
+- **HLT-012** — Synthetic Pandemic Spread Dataset (you are here)
+Use **HLT-001 through HLT-012 together** for the full healthcare data stack — and HLT-012 specifically extends the catalog into **population-level infectious disease dynamics**, complementing HLT-001 (population) and HLT-005 (hospital admissions) for end-to-end pandemic preparedness modeling.
+---
+## Citation
+If you use this dataset, please cite:
+```bibtex
+@dataset{xpertsystems_hlt012_sample_2026,
+  author       = {XpertSystems.ai},
+  title        = {HLT-012 Synthetic Pandemic Spread Dataset (Sample Preview)},
+  year         = 2026,
+  publisher    = {Hugging Face},
+  url          = {https://huggingface.co/datasets/xpertsystems/hlt012-sample}
+}
+```
+---
+## Contact
+- **Web:** [https://xpertsystems.ai](https://xpertsystems.ai)
+- **Email:** [pradeep@xpertsystems.ai](mailto:pradeep@xpertsystems.ai)
+- **Full product catalog:** Cybersecurity, Insurance & Risk, Materials & Energy, Oil & Gas, Healthcare, and more
+**Sample License:** CC-BY-NC-4.0 (Creative Commons Attribution-NonCommercial 4.0)
+**Full product License:** Commercial — please contact for pricing.

influenza_a_contact_network.csv ADDED Viewed

	@@ -0,0 +1,28 @@

+day,agent_id,infector_id,contact_type,contact_duration_min,contact_weight,age_band_agent,age_band_infector,household_id_agent,household_id_infector,variant,immune_escape
+1,12056,68,workplace,47,0.1925,18-49,0-4,3649,21,Wildtype,0.0
+2,9616,3108,school,73,0.3039,0-4,5-17,2926,959,Wildtype,0.0
+4,4851,9616,workplace,20,0.4948,50-64,0-4,1488,2926,Wildtype,0.0
+5,4374,12056,community,29,0.1543,18-49,18-49,1348,3649,Wildtype,0.0
+5,12042,12056,community,62,0.324,75+,18-49,3642,3649,Wildtype,0.0
+8,14093,12056,community,60,0.5267,50-64,18-49,4257,3649,Wildtype,0.0
+10,13518,4374,community,75,0.2213,18-49,18-49,4097,1348,Wildtype,0.0
+10,7985,12056,school,30,0.1902,5-17,18-49,2420,3649,Wildtype,0.0
+12,5196,4374,community,54,0.3804,18-49,18-49,1582,1348,Wildtype,0.0
+15,5846,13518,workplace,93,0.2954,75+,18-49,1794,4097,Wildtype,0.0
+20,798,5846,workplace,110,0.1269,50-64,75+,246,1794,Wildtype,0.0
+26,13985,798,workplace,85,0.3478,18-49,50-64,4229,246,Wildtype,0.0
+26,993,798,school,54,0.3414,5-17,50-64,310,246,Wildtype,0.0
+27,9490,798,community,113,0.1132,18-49,50-64,2894,246,Wildtype,0.0
+28,11485,798,community,111,0.5857,18-49,50-64,3484,246,Wildtype,0.0
+31,13264,993,school,8,0.3999,5-17,5-17,4023,310,Wildtype,0.0
+31,95,9490,community,104,0.0681,50-64,18-49,27,2894,Wildtype,0.0
+32,4707,13985,workplace,43,0.148,18-49,18-49,1452,4229,Wildtype,0.0
+33,5359,993,workplace,16,0.1834,65-74,5-17,1634,310,Wildtype,0.0
+33,12405,95,community,53,0.4352,50-64,50-64,3750,27,Wildtype,0.0
+34,10643,13264,workplace,73,0.2566,75+,5-17,3231,4023,Wildtype,0.0
+34,13329,11485,workplace,74,0.1143,18-49,18-49,4040,3484,Wildtype,0.0
+35,1952,95,community,112,0.1855,50-64,50-64,610,27,Wildtype,0.0
+36,7646,5359,school,23,0.1386,5-17,65-74,2316,1634,Wildtype,0.0
+38,4477,4707,workplace,117,0.2955,18-49,18-49,1382,1452,Wildtype,0.0
+39,8872,7646,school,65,0.3882,0-4,5-17,2701,2316,Wildtype,0.0
+48,10224,8872,workplace,47,0.5245,50-64,0-4,3092,2701,Wildtype,0.0

influenza_a_epidemic_timeseries.csv ADDED Viewed

	@@ -0,0 +1,121 @@

+day,date_offset,S,E,I,R,D,N,new_exposed,new_infectious,new_hospitalizations,icu_occupancy,Rt_estimated,attack_rate_cumulative,dominant_variant,variant_R0_mult,variant_immune_escape,variant_severity_mult,n_vaccinated,n_boosted,mean_immunity_level,effective_R0,pathogen,seed_county_fips,simulation_id,total
+0,Day_0000,9471,0,7,5522,0,15000,0,7,0,0,0.7509,0.368133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3069,Influenza-A,06037,HLT012_42,15000
+1,Day_0001,9471,0,7,5522,0,15000,1,7,0,0,0.8136,0.368133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4562,Influenza-A,06037,HLT012_42,15000
+2,Day_0002,9470,1,7,5522,0,15000,1,7,0,0,0.7419,0.368133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3519,Influenza-A,06037,HLT012_42,15000
+3,Day_0003,9469,2,3,5526,0,15000,0,3,0,0,0.7999,0.3684,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4129,Influenza-A,06037,HLT012_42,15000
+4,Day_0004,9469,0,5,5526,0,15000,1,5,0,0,0.7412,0.3684,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.359,Influenza-A,06037,HLT012_42,15000
+5,Day_0005,9468,1,3,5528,0,15000,2,3,0,0,0.6901,0.368533,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4784,Influenza-A,06037,HLT012_42,15000
+6,Day_0006,9466,2,3,5529,0,15000,0,3,0,0,0.7131,0.3686,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3897,Influenza-A,06037,HLT012_42,15000
+7,Day_0007,9466,1,4,5529,0,15000,0,4,0,0,0.7625,0.3686,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3929,Influenza-A,06037,HLT012_42,15000
+8,Day_0008,9466,1,4,5529,0,15000,1,4,0,0,0.8109,0.3686,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4416,Influenza-A,06037,HLT012_42,15000
+9,Day_0009,9465,1,5,5529,0,15000,0,5,0,0,0.7452,0.3686,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3323,Influenza-A,06037,HLT012_42,15000
+10,Day_0010,9465,0,5,5530,0,15000,2,5,0,0,0.7339,0.368667,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4594,Influenza-A,06037,HLT012_42,15000
+11,Day_0011,9463,2,4,5531,0,15000,0,4,0,0,0.7635,0.368733,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3973,Influenza-A,06037,HLT012_42,15000
+12,Day_0012,9463,2,3,5532,0,15000,1,3,0,0,0.8265,0.3688,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.416,Influenza-A,06037,HLT012_42,15000
+13,Day_0013,9462,2,4,5532,0,15000,0,4,0,0,0.6341,0.3688,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2838,Influenza-A,06037,HLT012_42,15000
+14,Day_0014,9462,0,4,5534,0,15000,0,4,0,0,0.7471,0.368933,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4245,Influenza-A,06037,HLT012_42,15000
+15,Day_0015,9462,0,3,5535,0,15000,1,3,0,0,0.652,0.369,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4356,Influenza-A,06037,HLT012_42,15000
+16,Day_0016,9461,1,3,5535,0,15000,0,3,0,0,0.782,0.369,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4378,Influenza-A,06037,HLT012_42,15000
+17,Day_0017,9461,1,3,5535,0,15000,0,3,0,0,0.7243,0.369,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4284,Influenza-A,06037,HLT012_42,15000
+18,Day_0018,9461,0,3,5536,0,15000,0,3,0,0,0.7531,0.369067,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5101,Influenza-A,06037,HLT012_42,15000
+19,Day_0019,9461,0,2,5537,0,15000,0,2,0,0,0.7504,0.369133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3182,Influenza-A,06037,HLT012_42,15000
+20,Day_0020,9461,0,2,5537,0,15000,1,2,0,0,0.7585,0.369133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4795,Influenza-A,06037,HLT012_42,15000
+21,Day_0021,9460,1,1,5538,0,15000,0,1,0,0,0.761,0.3692,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3981,Influenza-A,06037,HLT012_42,15000
+22,Day_0022,9460,0,2,5538,0,15000,0,2,0,0,0.6414,0.3692,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3404,Influenza-A,06037,HLT012_42,15000
+23,Day_0023,9460,0,2,5538,0,15000,0,2,0,0,0.8035,0.3692,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4363,Influenza-A,06037,HLT012_42,15000
+24,Day_0024,9460,0,1,5539,0,15000,0,1,0,0,0.7259,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.459,Influenza-A,06037,HLT012_42,15000
+25,Day_0025,9460,0,1,5539,0,15000,0,1,0,0,0.7339,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5023,Influenza-A,06037,HLT012_42,15000
+26,Day_0026,9460,0,1,5539,0,15000,2,1,0,0,0.8007,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5016,Influenza-A,06037,HLT012_42,15000
+27,Day_0027,9458,2,1,5539,0,15000,1,1,0,0,0.6927,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3179,Influenza-A,06037,HLT012_42,15000
+28,Day_0028,9457,1,3,5539,0,15000,1,3,0,0,0.8462,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4765,Influenza-A,06037,HLT012_42,15000
+29,Day_0029,9456,1,4,5539,0,15000,0,4,0,0,0.7511,0.369267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3785,Influenza-A,06037,HLT012_42,15000
+30,Day_0030,9456,0,4,5540,0,15000,0,4,0,0,0.7151,0.369333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4185,Influenza-A,06037,HLT012_42,15000
+31,Day_0031,9456,0,4,5540,0,15000,2,4,0,0,0.6593,0.369333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3291,Influenza-A,06037,HLT012_42,15000
+32,Day_0032,9454,0,6,5540,0,15000,1,6,0,0,0.6857,0.369333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2602,Influenza-A,06037,HLT012_42,15000
+33,Day_0033,9453,0,7,5540,0,15000,2,7,0,0,0.7125,0.369333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4261,Influenza-A,06037,HLT012_42,15000
+34,Day_0034,9451,1,8,5540,0,15000,2,8,0,0,0.661,0.369333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2698,Influenza-A,06037,HLT012_42,15000
+35,Day_0035,9449,3,4,5544,0,15000,1,4,0,0,0.8045,0.3696,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4651,Influenza-A,06037,HLT012_42,15000
+36,Day_0036,9448,3,5,5544,0,15000,1,5,0,0,0.6977,0.3696,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3417,Influenza-A,06037,HLT012_42,15000
+37,Day_0037,9447,2,6,5545,0,15000,0,6,0,0,0.691,0.369667,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3527,Influenza-A,06037,HLT012_42,15000
+38,Day_0038,9447,0,7,5546,0,15000,1,7,0,0,0.7952,0.369733,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5148,Influenza-A,06037,HLT012_42,15000
+39,Day_0039,9446,1,6,5547,0,15000,1,6,0,0,0.8055,0.3698,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4472,Influenza-A,06037,HLT012_42,15000
+40,Day_0040,9445,2,6,5547,0,15000,0,6,0,0,0.7308,0.3698,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.34,Influenza-A,06037,HLT012_42,15000
+41,Day_0041,9445,1,7,5547,0,15000,0,7,0,0,0.7732,0.3698,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4357,Influenza-A,06037,HLT012_42,15000
+42,Day_0042,9445,0,6,5549,0,15000,0,6,0,0,0.6588,0.369933,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4114,Influenza-A,06037,HLT012_42,15000
+43,Day_0043,9445,0,4,5551,0,15000,0,4,0,0,0.7501,0.370067,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4913,Influenza-A,06037,HLT012_42,15000
+44,Day_0044,9445,0,3,5552,0,15000,0,3,0,0,0.7337,0.370133,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.415,Influenza-A,06037,HLT012_42,15000
+45,Day_0045,9445,0,2,5553,0,15000,0,2,0,0,0.6787,0.3702,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3423,Influenza-A,06037,HLT012_42,15000
+46,Day_0046,9445,0,1,5554,0,15000,0,1,0,0,0.7754,0.370267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5227,Influenza-A,06037,HLT012_42,15000
+47,Day_0047,9445,0,1,5554,0,15000,0,1,0,0,0.7393,0.370267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2865,Influenza-A,06037,HLT012_42,15000
+48,Day_0048,9445,0,1,5554,0,15000,1,1,0,0,0.7235,0.370267,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4466,Influenza-A,06037,HLT012_42,15000
+49,Day_0049,9444,1,0,5555,0,15000,0,0,0,0,0.7015,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3793,Influenza-A,06037,HLT012_42,15000
+50,Day_0050,9444,1,0,5555,0,15000,0,0,0,0,0.6886,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3388,Influenza-A,06037,HLT012_42,15000
+51,Day_0051,9444,0,1,5555,0,15000,0,1,0,0,0.7515,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3854,Influenza-A,06037,HLT012_42,15000
+52,Day_0052,9444,0,1,5555,0,15000,0,1,0,0,0.6604,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2641,Influenza-A,06037,HLT012_42,15000
+53,Day_0053,9444,0,1,5555,0,15000,0,1,0,0,0.6904,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4749,Influenza-A,06037,HLT012_42,15000
+54,Day_0054,9444,0,1,5555,0,15000,0,1,0,0,0.6892,0.370333,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2993,Influenza-A,06037,HLT012_42,15000
+55,Day_0055,9444,0,0,5556,0,15000,0,0,0,0,0.7911,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4469,Influenza-A,06037,HLT012_42,15000
+56,Day_0056,9444,0,0,5556,0,15000,0,0,0,0,0.8296,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4684,Influenza-A,06037,HLT012_42,15000
+57,Day_0057,9444,0,0,5556,0,15000,0,0,0,0,0.7869,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3844,Influenza-A,06037,HLT012_42,15000
+58,Day_0058,9444,0,0,5556,0,15000,0,0,0,0,0.8216,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4733,Influenza-A,06037,HLT012_42,15000
+59,Day_0059,9444,0,0,5556,0,15000,0,0,0,0,0.8721,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5223,Influenza-A,06037,HLT012_42,15000
+60,Day_0060,9444,0,0,5556,0,15000,0,0,0,0,0.7234,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4267,Influenza-A,06037,HLT012_42,15000
+61,Day_0061,9444,0,0,5556,0,15000,0,0,0,0,0.772,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3078,Influenza-A,06037,HLT012_42,15000
+62,Day_0062,9444,0,0,5556,0,15000,0,0,0,0,0.7184,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.432,Influenza-A,06037,HLT012_42,15000
+63,Day_0063,9444,0,0,5556,0,15000,0,0,0,0,0.7331,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3968,Influenza-A,06037,HLT012_42,15000
+64,Day_0064,9444,0,0,5556,0,15000,0,0,0,0,0.8056,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.435,Influenza-A,06037,HLT012_42,15000
+65,Day_0065,9444,0,0,5556,0,15000,0,0,0,0,0.7147,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.2896,Influenza-A,06037,HLT012_42,15000
+66,Day_0066,9444,0,0,5556,0,15000,0,0,0,0,0.7219,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4381,Influenza-A,06037,HLT012_42,15000
+67,Day_0067,9444,0,0,5556,0,15000,0,0,0,0,0.7429,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3975,Influenza-A,06037,HLT012_42,15000
+68,Day_0068,9444,0,0,5556,0,15000,0,0,0,0,0.7362,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4497,Influenza-A,06037,HLT012_42,15000
+69,Day_0069,9444,0,0,5556,0,15000,0,0,0,0,0.7352,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3923,Influenza-A,06037,HLT012_42,15000
+70,Day_0070,9444,0,0,5556,0,15000,0,0,0,0,0.7203,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4696,Influenza-A,06037,HLT012_42,15000
+71,Day_0071,9444,0,0,5556,0,15000,0,0,0,0,0.7226,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4089,Influenza-A,06037,HLT012_42,15000
+72,Day_0072,9444,0,0,5556,0,15000,0,0,0,0,0.7488,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4738,Influenza-A,06037,HLT012_42,15000
+73,Day_0073,9444,0,0,5556,0,15000,0,0,0,0,0.7262,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3183,Influenza-A,06037,HLT012_42,15000
+74,Day_0074,9444,0,0,5556,0,15000,0,0,0,0,0.6949,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3294,Influenza-A,06037,HLT012_42,15000
+75,Day_0075,9444,0,0,5556,0,15000,0,0,0,0,0.8392,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4119,Influenza-A,06037,HLT012_42,15000
+76,Day_0076,9444,0,0,5556,0,15000,0,0,0,0,0.7644,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4928,Influenza-A,06037,HLT012_42,15000
+77,Day_0077,9444,0,0,5556,0,15000,0,0,0,0,0.8438,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4799,Influenza-A,06037,HLT012_42,15000
+78,Day_0078,9444,0,0,5556,0,15000,0,0,0,0,0.7844,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4668,Influenza-A,06037,HLT012_42,15000
+79,Day_0079,9444,0,0,5556,0,15000,0,0,0,0,0.6013,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4131,Influenza-A,06037,HLT012_42,15000
+80,Day_0080,9444,0,0,5556,0,15000,0,0,0,0,0.9199,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5755,Influenza-A,06037,HLT012_42,15000
+81,Day_0081,9444,0,0,5556,0,15000,0,0,0,0,0.6449,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3257,Influenza-A,06037,HLT012_42,15000
+82,Day_0082,9444,0,0,5556,0,15000,0,0,0,0,0.7219,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4768,Influenza-A,06037,HLT012_42,15000
+83,Day_0083,9444,0,0,5556,0,15000,0,0,0,0,0.772,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.382,Influenza-A,06037,HLT012_42,15000
+84,Day_0084,9444,0,0,5556,0,15000,0,0,0,0,0.7489,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.4596,Influenza-A,06037,HLT012_42,15000
+85,Day_0085,9444,0,0,5556,0,15000,0,0,0,0,0.7247,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3947,Influenza-A,06037,HLT012_42,15000
+86,Day_0086,9444,0,0,5556,0,15000,0,0,0,0,0.6459,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.317,Influenza-A,06037,HLT012_42,15000
+87,Day_0087,9444,0,0,5556,0,15000,0,0,0,0,0.8023,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3466,Influenza-A,06037,HLT012_42,15000
+88,Day_0088,9444,0,0,5556,0,15000,0,0,0,0,0.7917,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.5182,Influenza-A,06037,HLT012_42,15000
+89,Day_0089,9444,0,0,5556,0,15000,0,0,0,0,0.7278,0.3704,Wildtype,1.0,0.0,1.0,5858,2670,0.3694,1.3474,Influenza-A,06037,HLT012_42,15000
+90,Day_0090,9444,0,0,5556,0,15000,0,0,0,0,1.1542,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1241,Influenza-A,06037,HLT012_42,15000
+91,Day_0091,9444,0,0,5556,0,15000,0,0,0,0,1.1011,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1104,Influenza-A,06037,HLT012_42,15000
+92,Day_0092,9444,0,0,5556,0,15000,0,0,0,0,1.072,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1006,Influenza-A,06037,HLT012_42,15000
+93,Day_0093,9444,0,0,5556,0,15000,0,0,0,0,1.1765,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0757,Influenza-A,06037,HLT012_42,15000
+94,Day_0094,9444,0,0,5556,0,15000,0,0,0,0,1.0903,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1258,Influenza-A,06037,HLT012_42,15000
+95,Day_0095,9444,0,0,5556,0,15000,0,0,0,0,1.0777,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.033,Influenza-A,06037,HLT012_42,15000
+96,Day_0096,9444,0,0,5556,0,15000,0,0,0,0,1.1296,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1472,Influenza-A,06037,HLT012_42,15000
+97,Day_0097,9444,0,0,5556,0,15000,0,0,0,0,1.1268,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.2416,Influenza-A,06037,HLT012_42,15000
+98,Day_0098,9444,0,0,5556,0,15000,0,0,0,0,1.2171,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.2285,Influenza-A,06037,HLT012_42,15000
+99,Day_0099,9444,0,0,5556,0,15000,0,0,0,0,1.0991,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1255,Influenza-A,06037,HLT012_42,15000
+100,Day_0100,9444,0,0,5556,0,15000,0,0,0,0,1.0663,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1304,Influenza-A,06037,HLT012_42,15000
+101,Day_0101,9444,0,0,5556,0,15000,0,0,0,0,1.1793,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1267,Influenza-A,06037,HLT012_42,15000
+102,Day_0102,9444,0,0,5556,0,15000,0,0,0,0,1.0686,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.3312,Influenza-A,06037,HLT012_42,15000
+103,Day_0103,9444,0,0,5556,0,15000,0,0,0,0,1.0805,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.2311,Influenza-A,06037,HLT012_42,15000
+104,Day_0104,9444,0,0,5556,0,15000,0,0,0,0,1.1511,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0166,Influenza-A,06037,HLT012_42,15000
+105,Day_0105,9444,0,0,5556,0,15000,0,0,0,0,1.0313,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,1.9977,Influenza-A,06037,HLT012_42,15000
+106,Day_0106,9444,0,0,5556,0,15000,0,0,0,0,1.0917,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.045,Influenza-A,06037,HLT012_42,15000
+107,Day_0107,9444,0,0,5556,0,15000,0,0,0,0,0.9283,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,1.92,Influenza-A,06037,HLT012_42,15000
+108,Day_0108,9444,0,0,5556,0,15000,0,0,0,0,1.1575,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0801,Influenza-A,06037,HLT012_42,15000
+109,Day_0109,9444,0,0,5556,0,15000,0,0,0,0,1.0839,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1285,Influenza-A,06037,HLT012_42,15000
+110,Day_0110,9444,0,0,5556,0,15000,0,0,0,0,1.059,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0455,Influenza-A,06037,HLT012_42,15000
+111,Day_0111,9444,0,0,5556,0,15000,0,0,0,0,1.1816,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1216,Influenza-A,06037,HLT012_42,15000
+112,Day_0112,9444,0,0,5556,0,15000,0,0,0,0,1.2058,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1382,Influenza-A,06037,HLT012_42,15000
+113,Day_0113,9444,0,0,5556,0,15000,0,0,0,0,1.064,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1718,Influenza-A,06037,HLT012_42,15000
+114,Day_0114,9444,0,0,5556,0,15000,0,0,0,0,1.0428,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0001,Influenza-A,06037,HLT012_42,15000
+115,Day_0115,9444,0,0,5556,0,15000,0,0,0,0,1.0834,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.2029,Influenza-A,06037,HLT012_42,15000
+116,Day_0116,9444,0,0,5556,0,15000,0,0,0,0,1.0974,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1402,Influenza-A,06037,HLT012_42,15000
+117,Day_0117,9444,0,0,5556,0,15000,0,0,0,0,1.1036,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.0915,Influenza-A,06037,HLT012_42,15000
+118,Day_0118,9444,0,0,5556,0,15000,0,0,0,0,1.1565,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.2707,Influenza-A,06037,HLT012_42,15000
+119,Day_0119,9444,0,0,5556,0,15000,0,0,0,0,1.114,0.3704,Alpha-proxy,1.5,0.15,1.1,5858,2670,0.3694,2.1977,Influenza-A,06037,HLT012_42,15000

measles_contact_network.csv ADDED Viewed

The diff for this file is too large to render. See raw diff

measles_epidemic_timeseries.csv ADDED Viewed

	@@ -0,0 +1,241 @@

+day,date_offset,S,E,I,R,D,N,new_exposed,new_infectious,new_hospitalizations,icu_occupancy,Rt_estimated,attack_rate_cumulative,dominant_variant,variant_R0_mult,variant_immune_escape,variant_severity_mult,n_vaccinated,n_boosted,mean_immunity_level,effective_R0,pathogen,seed_county_fips,simulation_id,total
+0,Day_0000,6746,0,7,8247,0,15000,3,7,0,0,4.3127,0.5498,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.3968,Measles,06037,HLT012_42,15000
+1,Day_0001,6743,3,7,8247,0,15000,3,7,0,0,4.3498,0.5498,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0388,Measles,06037,HLT012_42,15000
+2,Day_0002,6740,6,7,8247,0,15000,2,7,0,0,4.6332,0.5498,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.2738,Measles,06037,HLT012_42,15000
+3,Day_0003,6738,8,7,8247,0,15000,3,7,0,0,4.2992,0.5498,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0669,Measles,06037,HLT012_42,15000
+4,Day_0004,6735,11,6,8248,0,15000,2,6,0,0,4.5373,0.549867,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.6775,Measles,06037,HLT012_42,15000
+5,Day_0005,6733,13,3,8251,0,15000,0,3,0,0,4.6114,0.550067,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.79,Measles,06037,HLT012_42,15000
+6,Day_0006,6733,13,3,8251,0,15000,2,3,0,0,4.283,0.550067,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0588,Measles,06037,HLT012_42,15000
+7,Day_0007,6731,15,2,8252,0,15000,2,2,0,0,4.5732,0.550133,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.7696,Measles,06037,HLT012_42,15000
+8,Day_0008,6729,17,1,8253,0,15000,1,1,0,0,4.1066,0.5502,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.5529,Measles,06037,HLT012_42,15000
+9,Day_0009,6728,18,0,8254,0,15000,0,0,0,0,4.1511,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.3563,Measles,06037,HLT012_42,15000
+10,Day_0010,6728,17,1,8254,0,15000,0,1,0,0,4.5896,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.6461,Measles,06037,HLT012_42,15000
+11,Day_0011,6728,15,3,8254,0,15000,1,3,0,0,4.482,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.7466,Measles,06037,HLT012_42,15000
+12,Day_0012,6727,14,5,8254,0,15000,3,5,0,0,4.3767,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1314,Measles,06037,HLT012_42,15000
+13,Day_0013,6724,14,8,8254,0,15000,4,8,0,0,3.9428,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.6765,Measles,06037,HLT012_42,15000
+14,Day_0014,6720,17,9,8254,0,15000,5,9,0,0,4.2673,0.550267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.9772,Measles,06037,HLT012_42,15000
+15,Day_0015,6715,21,9,8255,0,15000,3,9,0,0,3.8915,0.550333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.398,Measles,06037,HLT012_42,15000
+16,Day_0016,6712,20,13,8255,0,15000,7,13,0,0,4.4388,0.550333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.4185,Measles,06037,HLT012_42,15000
+17,Day_0017,6705,26,14,8255,0,15000,6,14,0,0,4.2429,0.550333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8744,Measles,06037,HLT012_42,15000
+18,Day_0018,6699,30,15,8256,0,15000,7,15,0,0,4.2204,0.5504,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7687,Measles,06037,HLT012_42,15000
+19,Day_0019,6692,37,12,8259,0,15000,9,12,0,0,4.2135,0.5506,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0543,Measles,06037,HLT012_42,15000
+20,Day_0020,6683,45,12,8260,0,15000,6,12,0,0,4.4063,0.550667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1684,Measles,06037,HLT012_42,15000
+21,Day_0021,6677,49,14,8260,0,15000,8,14,0,0,4.3717,0.550667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.3539,Measles,06037,HLT012_42,15000
+22,Day_0022,6669,55,15,8261,0,15000,11,15,0,0,4.0268,0.550733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.1236,Measles,06037,HLT012_42,15000
+23,Day_0023,6658,62,17,8263,0,15000,3,17,0,0,4.1949,0.550867,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0801,Measles,06037,HLT012_42,15000
+24,Day_0024,6655,62,15,8268,0,15000,9,15,0,0,4.4686,0.5512,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.6718,Measles,06037,HLT012_42,15000
+25,Day_0025,6646,70,16,8268,0,15000,7,16,0,0,4.1598,0.5512,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7481,Measles,06037,HLT012_42,15000
+26,Day_0026,6639,67,24,8270,0,15000,10,24,0,0,4.3678,0.551333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.2827,Measles,06037,HLT012_42,15000
+27,Day_0027,6629,70,29,8272,0,15000,16,29,0,0,4.6687,0.551467,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.5818,Measles,06037,HLT012_42,15000
+28,Day_0028,6613,77,37,8273,0,15000,21,37,0,0,4.2367,0.551533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.3493,Measles,06037,HLT012_42,15000
+29,Day_0029,6592,93,42,8273,0,15000,17,42,0,0,3.7954,0.551533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.8952,Measles,06037,HLT012_42,15000
+30,Day_0030,6575,105,45,8275,0,15000,33,45,0,0,4.1344,0.551667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0429,Measles,06037,HLT012_42,15000
+31,Day_0031,6542,128,51,8279,0,15000,25,51,0,0,4.2347,0.551933,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8622,Measles,06037,HLT012_42,15000
+32,Day_0032,6517,144,55,8284,0,15000,30,55,0,0,4.0689,0.552267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.5274,Measles,06037,HLT012_42,15000
+33,Day_0033,6487,167,60,8286,0,15000,31,60,0,0,4.4871,0.5524,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.1886,Measles,06037,HLT012_42,15000
+34,Day_0034,6456,190,64,8290,0,15000,36,64,0,0,4.1747,0.552667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.2796,Measles,06037,HLT012_42,15000
+35,Day_0035,6420,220,62,8298,0,15000,36,62,0,0,4.0285,0.5532,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.9906,Measles,06037,HLT012_42,15000
+36,Day_0036,6384,244,69,8303,0,15000,35,69,0,0,3.862,0.553533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.1355,Measles,06037,HLT012_42,15000
+37,Day_0037,6349,267,77,8307,0,15000,44,77,0,0,4.3103,0.5538,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.0861,Measles,06037,HLT012_42,15000
+38,Day_0038,6305,296,80,8319,0,15000,40,80,0,0,3.8914,0.5546,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7042,Measles,06037,HLT012_42,15000
+39,Day_0039,6265,317,87,8331,0,15000,33,87,0,0,3.7544,0.5554,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.4224,Measles,06037,HLT012_42,15000
+40,Day_0040,6232,329,103,8336,0,15000,48,103,0,0,3.9883,0.555733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.5255,Measles,06037,HLT012_42,15000
+41,Day_0041,6184,348,125,8343,0,15000,66,125,0,0,4.097,0.5562,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.51,Measles,06037,HLT012_42,15000
+42,Day_0042,6118,386,146,8350,0,15000,70,146,0,0,3.6901,0.556667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.4777,Measles,06037,HLT012_42,15000
+43,Day_0043,6048,412,179,8361,0,15000,60,179,0,0,3.7657,0.5574,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7128,Measles,06037,HLT012_42,15000
+44,Day_0044,5988,444,193,8375,0,15000,89,193,0,0,3.9837,0.558333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.716,Measles,06037,HLT012_42,15000
+45,Day_0045,5899,500,212,8389,0,15000,93,212,1,0,3.64,0.559267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.824,Measles,06037,HLT012_42,15000
+46,Day_0046,5806,560,233,8401,0,15000,128,233,1,0,3.8892,0.560067,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.1845,Measles,06037,HLT012_42,15000
+47,Day_0047,5678,646,252,8423,1,15000,134,252,1,0,3.792,0.5616,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.0641,Measles,06037,HLT012_42,15000
+48,Day_0048,5544,741,273,8441,1,15000,107,273,1,0,3.4286,0.5628,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.9458,Measles,06037,HLT012_42,15000
+49,Day_0049,5437,802,299,8461,1,15000,131,299,1,0,3.4724,0.564133,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1031,Measles,06037,HLT012_42,15000
+50,Day_0050,5306,886,318,8489,1,15000,153,318,1,0,3.4427,0.566,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.351,Measles,06037,HLT012_42,15000
+51,Day_0051,5153,991,340,8515,1,15000,130,340,1,0,3.0161,0.567733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7887,Measles,06037,HLT012_42,15000
+52,Day_0052,5023,1051,376,8549,1,15000,145,376,1,0,2.9886,0.57,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8239,Measles,06037,HLT012_42,15000
+53,Day_0053,4878,1122,410,8589,1,15000,141,410,1,0,2.8775,0.572667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8272,Measles,06037,HLT012_42,15000
+54,Day_0054,4737,1185,455,8622,1,15000,156,455,2,0,2.8416,0.574867,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8288,Measles,06037,HLT012_42,15000
+55,Day_0055,4581,1251,509,8658,1,15000,160,509,2,0,2.7186,0.577267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0145,Measles,06037,HLT012_42,15000
+56,Day_0056,4421,1294,586,8698,1,15000,195,586,2,0,2.6941,0.579933,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.6848,Measles,06037,HLT012_42,15000
+57,Day_0057,4226,1371,665,8737,1,15000,186,665,3,0,2.2792,0.582533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.9172,Measles,06037,HLT012_42,15000
+58,Day_0058,4040,1432,739,8787,2,15000,228,739,3,0,2.2018,0.585933,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.6296,Measles,06037,HLT012_42,15000
+59,Day_0059,3812,1522,810,8854,2,15000,193,810,3,0,1.9187,0.5904,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.7105,Measles,06037,HLT012_42,15000
+60,Day_0060,3619,1585,885,8909,2,15000,238,885,4,0,1.9549,0.594067,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1889,Measles,06037,HLT012_42,15000
+61,Day_0061,3381,1666,981,8970,2,15000,212,981,4,0,1.78,0.598133,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.8839,Measles,06037,HLT012_42,15000
+62,Day_0062,3169,1750,1025,9054,2,15000,225,1025,4,0,1.4712,0.603733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.0592,Measles,06037,HLT012_42,15000
+63,Day_0063,2944,1840,1047,9167,2,15000,202,1047,5,1,1.6341,0.611267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0149,Measles,06037,HLT012_42,15000
+64,Day_0064,2742,1903,1098,9255,2,15000,200,1098,5,1,1.2712,0.617133,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.278,Measles,06037,HLT012_42,15000
+65,Day_0065,2542,1924,1180,9352,2,15000,177,1180,5,1,1.1727,0.6236,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.4162,Measles,06037,HLT012_42,15000
+66,Day_0066,2365,1906,1256,9471,2,15000,184,1256,6,1,1.1609,0.631533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.5156,Measles,06037,HLT012_42,15000
+67,Day_0067,2181,1916,1310,9591,2,15000,167,1310,6,1,1.0895,0.639533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1891,Measles,06037,HLT012_42,15000
+68,Day_0068,2014,1879,1382,9723,2,15000,153,1382,6,1,0.9296,0.648333,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.7734,Measles,06037,HLT012_42,15000
+69,Day_0069,1861,1815,1465,9856,3,15000,174,1465,7,1,0.8252,0.657267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.9191,Measles,06037,HLT012_42,15000
+70,Day_0070,1687,1794,1525,9991,3,15000,146,1525,7,1,0.7311,0.666267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.8278,Measles,06037,HLT012_42,15000
+71,Day_0071,1541,1735,1580,10141,3,15000,127,1580,7,1,0.6199,0.676267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0407,Measles,06037,HLT012_42,15000
+72,Day_0072,1414,1649,1626,10308,3,15000,118,1626,7,1,0.5131,0.6874,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.4102,Measles,06037,HLT012_42,15000
+73,Day_0073,1296,1586,1655,10460,3,15000,114,1655,8,1,0.532,0.697533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.4174,Measles,06037,HLT012_42,15000
+74,Day_0074,1182,1472,1708,10634,4,15000,83,1708,8,1,0.4804,0.7092,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.3978,Measles,06037,HLT012_42,15000
+75,Day_0075,1099,1373,1714,10810,4,15000,81,1714,8,1,0.3983,0.720933,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.2063,Measles,06037,HLT012_42,15000
+76,Day_0076,1018,1259,1728,10991,4,15000,89,1728,8,1,0.3823,0.733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.5279,Measles,06037,HLT012_42,15000
+77,Day_0077,929,1168,1690,11209,4,15000,82,1690,8,1,0.4166,0.747533,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.5602,Measles,06037,HLT012_42,15000
+78,Day_0078,847,1092,1628,11429,4,15000,60,1628,8,1,0.2448,0.7622,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.2751,Measles,06037,HLT012_42,15000
+79,Day_0079,787,997,1576,11635,5,15000,41,1576,7,1,0.2743,0.776,Wildtype,1.0,0.0,1.0,12459,5616,0.551,13.9009,Measles,06037,HLT012_42,15000
+80,Day_0080,746,887,1537,11825,5,15000,44,1537,7,1,0.1639,0.788667,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.581,Measles,06037,HLT012_42,15000
+81,Day_0081,702,799,1463,12030,6,15000,44,1463,7,1,0.3355,0.8024,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.2067,Measles,06037,HLT012_42,15000
+82,Day_0082,658,714,1391,12230,7,15000,43,1391,6,1,0.1854,0.8158,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.1353,Measles,06037,HLT012_42,15000
+83,Day_0083,615,644,1334,12400,7,15000,35,1334,6,1,0.1974,0.827133,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.1408,Measles,06037,HLT012_42,15000
+84,Day_0084,580,578,1265,12569,8,15000,28,1265,6,1,0.2049,0.838467,Wildtype,1.0,0.0,1.0,12459,5616,0.551,16.6166,Measles,06037,HLT012_42,15000
+85,Day_0085,552,512,1157,12771,8,15000,26,1157,5,1,0.2193,0.851933,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.0939,Measles,06037,HLT012_42,15000
+86,Day_0086,526,454,1075,12937,8,15000,24,1075,5,1,0.185,0.863,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.6932,Measles,06037,HLT012_42,15000
+87,Day_0087,502,405,987,13098,8,15000,26,987,4,0,0.1963,0.873733,Wildtype,1.0,0.0,1.0,12459,5616,0.551,15.4692,Measles,06037,HLT012_42,15000
+88,Day_0088,476,372,888,13255,9,15000,19,888,4,0,0.1136,0.884267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.5024,Measles,06037,HLT012_42,15000
+89,Day_0089,457,329,800,13405,9,15000,14,800,3,0,0.1369,0.894267,Wildtype,1.0,0.0,1.0,12459,5616,0.551,14.1598,Measles,06037,HLT012_42,15000
+90,Day_0090,443,300,724,13523,10,15000,17,724,3,0,0.1812,0.9022,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,24.1088,Measles,06037,HLT012_42,15000
+91,Day_0091,426,264,655,13645,10,15000,19,655,3,0,0.2025,0.910333,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5451,Measles,06037,HLT012_42,15000
+92,Day_0092,407,243,571,13768,11,15000,9,571,2,0,0.2323,0.9186,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,24.3303,Measles,06037,HLT012_42,15000
+93,Day_0093,398,218,512,13859,13,15000,15,512,2,0,0.1707,0.9248,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5255,Measles,06037,HLT012_42,15000
+94,Day_0094,383,205,445,13954,13,15000,6,445,2,0,0.1454,0.931133,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.8012,Measles,06037,HLT012_42,15000
+95,Day_0095,377,175,407,14028,13,15000,4,407,2,0,0.0178,0.936067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.8103,Measles,06037,HLT012_42,15000
+96,Day_0096,373,151,368,14095,13,15000,9,368,1,0,0.1435,0.940533,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2302,Measles,06037,HLT012_42,15000
+97,Day_0097,364,135,336,14152,13,15000,6,336,1,0,0.0819,0.944333,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.1113,Measles,06037,HLT012_42,15000
+98,Day_0098,358,115,304,14209,14,15000,5,304,1,0,0.09,0.9482,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.5223,Measles,06037,HLT012_42,15000
+99,Day_0099,353,103,274,14256,14,15000,5,274,1,0,0.0296,0.951333,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6926,Measles,06037,HLT012_42,15000
+100,Day_0100,348,93,248,14297,14,15000,4,248,1,0,0.1645,0.954067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.9292,Measles,06037,HLT012_42,15000
+101,Day_0101,344,84,227,14331,14,15000,3,227,1,0,0.0829,0.956333,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.1295,Measles,06037,HLT012_42,15000
+102,Day_0102,341,71,203,14371,14,15000,3,203,1,0,0.0894,0.959,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.1361,Measles,06037,HLT012_42,15000
+103,Day_0103,338,66,177,14405,14,15000,2,177,0,0,0.0507,0.961267,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.429,Measles,06037,HLT012_42,15000
+104,Day_0104,336,51,169,14430,14,15000,3,169,0,0,0.0589,0.962933,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.4225,Measles,06037,HLT012_42,15000
+105,Day_0105,333,45,152,14456,14,15000,4,152,0,0,0.1197,0.964667,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.9004,Measles,06037,HLT012_42,15000
+106,Day_0106,329,42,130,14485,14,15000,1,130,0,0,0.1696,0.9666,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5308,Measles,06037,HLT012_42,15000
+107,Day_0107,328,36,113,14509,14,15000,2,113,0,0,0.1275,0.9682,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,25.3313,Measles,06037,HLT012_42,15000
+108,Day_0108,326,30,103,14527,14,15000,3,103,0,0,0.1462,0.9694,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.9619,Measles,06037,HLT012_42,15000
+109,Day_0109,323,30,93,14539,15,15000,2,93,0,0,0.12,0.970267,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.9938,Measles,06037,HLT012_42,15000
+110,Day_0110,321,27,78,14559,15,15000,2,78,0,0,0.0806,0.9716,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6997,Measles,06037,HLT012_42,15000
+111,Day_0111,319,24,68,14574,15,15000,1,68,0,0,0.1032,0.9726,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.2166,Measles,06037,HLT012_42,15000
+112,Day_0112,318,23,63,14581,15,15000,1,63,0,0,0.0152,0.973067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.3337,Measles,06037,HLT012_42,15000
+113,Day_0113,317,21,56,14591,15,15000,0,56,0,0,0.1145,0.973733,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5196,Measles,06037,HLT012_42,15000
+114,Day_0114,317,19,46,14603,15,15000,0,46,0,0,0.0591,0.974533,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.1367,Measles,06037,HLT012_42,15000
+115,Day_0115,317,17,36,14615,15,15000,2,36,0,0,0.0395,0.975333,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2081,Measles,06037,HLT012_42,15000
+116,Day_0116,315,17,27,14626,15,15000,1,27,0,0,0.2012,0.976067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.4507,Measles,06037,HLT012_42,15000
+117,Day_0117,314,12,28,14631,15,15000,0,28,0,0,0.1032,0.9764,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.9476,Measles,06037,HLT012_42,15000
+118,Day_0118,314,11,24,14636,15,15000,0,24,0,0,0.0788,0.976733,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.9774,Measles,06037,HLT012_42,15000
+119,Day_0119,314,8,23,14640,15,15000,0,23,0,0,0.1019,0.977,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.728,Measles,06037,HLT012_42,15000
+120,Day_0120,314,8,20,14643,15,15000,0,20,0,0,0.1199,0.9772,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6328,Measles,06037,HLT012_42,15000
+121,Day_0121,314,7,20,14644,15,15000,0,20,0,0,0.1432,0.977267,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.3272,Measles,06037,HLT012_42,15000
+122,Day_0122,314,5,18,14648,15,15000,0,18,0,0,0.1814,0.977533,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.1649,Measles,06037,HLT012_42,15000
+123,Day_0123,314,4,17,14650,15,15000,0,17,0,0,0.1236,0.977667,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5075,Measles,06037,HLT012_42,15000
+124,Day_0124,314,3,14,14654,15,15000,0,14,0,0,0.165,0.977933,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.5231,Measles,06037,HLT012_42,15000
+125,Day_0125,314,2,10,14659,15,15000,0,10,0,0,0.1487,0.978267,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,25.9788,Measles,06037,HLT012_42,15000
+126,Day_0126,314,1,8,14662,15,15000,0,8,0,0,0.1104,0.978467,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5654,Measles,06037,HLT012_42,15000
+127,Day_0127,314,0,7,14664,15,15000,0,7,0,0,0.1621,0.9786,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.2655,Measles,06037,HLT012_42,15000
+128,Day_0128,314,0,7,14664,15,15000,0,7,0,0,0.2243,0.9786,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.6837,Measles,06037,HLT012_42,15000
+129,Day_0129,314,0,7,14664,15,15000,0,7,0,0,0.1039,0.9786,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.0252,Measles,06037,HLT012_42,15000
+130,Day_0130,314,0,6,14665,15,15000,0,6,0,0,0.1702,0.978667,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.9019,Measles,06037,HLT012_42,15000
+131,Day_0131,314,0,4,14667,15,15000,0,4,0,0,0.0142,0.9788,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.021,Measles,06037,HLT012_42,15000
+132,Day_0132,314,0,3,14668,15,15000,0,3,0,0,0.081,0.978867,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5756,Measles,06037,HLT012_42,15000
+133,Day_0133,314,0,3,14668,15,15000,0,3,0,0,0.1364,0.978867,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.7896,Measles,06037,HLT012_42,15000
+134,Day_0134,314,0,1,14670,15,15000,0,1,0,0,0.0,0.979,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.3158,Measles,06037,HLT012_42,15000
+135,Day_0135,314,0,1,14670,15,15000,0,1,0,0,0.1039,0.979,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.7626,Measles,06037,HLT012_42,15000
+136,Day_0136,314,0,0,14671,15,15000,0,0,0,0,0.1475,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,19.6205,Measles,06037,HLT012_42,15000
+137,Day_0137,314,0,0,14671,15,15000,0,0,0,0,0.1972,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.9188,Measles,06037,HLT012_42,15000
+138,Day_0138,314,0,0,14671,15,15000,0,0,0,0,0.1407,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.5355,Measles,06037,HLT012_42,15000
+139,Day_0139,314,0,0,14671,15,15000,0,0,0,0,0.1671,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.342,Measles,06037,HLT012_42,15000
+140,Day_0140,314,0,0,14671,15,15000,0,0,0,0,0.0523,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5581,Measles,06037,HLT012_42,15000
+141,Day_0141,314,0,0,14671,15,15000,0,0,0,0,0.156,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.2938,Measles,06037,HLT012_42,15000
+142,Day_0142,314,0,0,14671,15,15000,0,0,0,0,0.0948,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.3018,Measles,06037,HLT012_42,15000
+143,Day_0143,314,0,0,14671,15,15000,0,0,0,0,0.1934,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.3854,Measles,06037,HLT012_42,15000
+144,Day_0144,314,0,0,14671,15,15000,0,0,0,0,0.0925,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.9243,Measles,06037,HLT012_42,15000
+145,Day_0145,314,0,0,14671,15,15000,0,0,0,0,0.1252,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5227,Measles,06037,HLT012_42,15000
+146,Day_0146,314,0,0,14671,15,15000,0,0,0,0,0.1026,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.4536,Measles,06037,HLT012_42,15000
+147,Day_0147,314,0,0,14671,15,15000,0,0,0,0,0.0347,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2178,Measles,06037,HLT012_42,15000
+148,Day_0148,314,0,0,14671,15,15000,0,0,0,0,0.1217,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.0699,Measles,06037,HLT012_42,15000
+149,Day_0149,314,0,0,14671,15,15000,0,0,0,0,0.0731,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2705,Measles,06037,HLT012_42,15000
+150,Day_0150,314,0,0,14671,15,15000,0,0,0,0,0.074,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.7044,Measles,06037,HLT012_42,15000
+151,Day_0151,314,0,0,14671,15,15000,0,0,0,0,0.0603,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.8195,Measles,06037,HLT012_42,15000
+152,Day_0152,314,0,0,14671,15,15000,0,0,0,0,0.0271,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5073,Measles,06037,HLT012_42,15000
+153,Day_0153,314,0,0,14671,15,15000,0,0,0,0,0.0966,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.6385,Measles,06037,HLT012_42,15000
+154,Day_0154,314,0,0,14671,15,15000,0,0,0,0,0.0409,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.0507,Measles,06037,HLT012_42,15000
+155,Day_0155,314,0,0,14671,15,15000,0,0,0,0,0.168,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.7622,Measles,06037,HLT012_42,15000
+156,Day_0156,314,0,0,14671,15,15000,0,0,0,0,0.1555,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.1819,Measles,06037,HLT012_42,15000
+157,Day_0157,314,0,0,14671,15,15000,0,0,0,0,0.0377,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.7984,Measles,06037,HLT012_42,15000
+158,Day_0158,314,0,0,14671,15,15000,0,0,0,0,0.1594,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5546,Measles,06037,HLT012_42,15000
+159,Day_0159,314,0,0,14671,15,15000,0,0,0,0,0.144,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.5985,Measles,06037,HLT012_42,15000
+160,Day_0160,314,0,0,14671,15,15000,0,0,0,0,0.1572,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.2793,Measles,06037,HLT012_42,15000
+161,Day_0161,314,0,0,14671,15,15000,0,0,0,0,0.2361,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5634,Measles,06037,HLT012_42,15000
+162,Day_0162,314,0,0,14671,15,15000,0,0,0,0,0.1841,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.407,Measles,06037,HLT012_42,15000
+163,Day_0163,314,0,0,14671,15,15000,0,0,0,0,0.1889,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.831,Measles,06037,HLT012_42,15000
+164,Day_0164,314,0,0,14671,15,15000,0,0,0,0,0.1288,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.9389,Measles,06037,HLT012_42,15000
+165,Day_0165,314,0,0,14671,15,15000,0,0,0,0,0.154,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6557,Measles,06037,HLT012_42,15000
+166,Day_0166,314,0,0,14671,15,15000,0,0,0,0,0.1856,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.248,Measles,06037,HLT012_42,15000
+167,Day_0167,314,0,0,14671,15,15000,0,0,0,0,0.1198,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6292,Measles,06037,HLT012_42,15000
+168,Day_0168,314,0,0,14671,15,15000,0,0,0,0,0.1468,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.3796,Measles,06037,HLT012_42,15000
+169,Day_0169,314,0,0,14671,15,15000,0,0,0,0,0.0963,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.4294,Measles,06037,HLT012_42,15000
+170,Day_0170,314,0,0,14671,15,15000,0,0,0,0,0.1533,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.4919,Measles,06037,HLT012_42,15000
+171,Day_0171,314,0,0,14671,15,15000,0,0,0,0,0.1384,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.7351,Measles,06037,HLT012_42,15000
+172,Day_0172,314,0,0,14671,15,15000,0,0,0,0,0.1009,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.3136,Measles,06037,HLT012_42,15000
+173,Day_0173,314,0,0,14671,15,15000,0,0,0,0,0.1268,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.831,Measles,06037,HLT012_42,15000
+174,Day_0174,314,0,0,14671,15,15000,0,0,0,0,0.1502,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.5999,Measles,06037,HLT012_42,15000
+175,Day_0175,314,0,0,14671,15,15000,0,0,0,0,0.0632,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.3342,Measles,06037,HLT012_42,15000
+176,Day_0176,314,0,0,14671,15,15000,0,0,0,0,0.1906,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.9607,Measles,06037,HLT012_42,15000
+177,Day_0177,314,0,0,14671,15,15000,0,0,0,0,0.1076,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.3702,Measles,06037,HLT012_42,15000
+178,Day_0178,314,0,0,14671,15,15000,0,0,0,0,0.1427,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2997,Measles,06037,HLT012_42,15000
+179,Day_0179,314,0,0,14671,15,15000,0,0,0,0,0.1302,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.4665,Measles,06037,HLT012_42,15000
+180,Day_0180,314,0,0,14671,15,15000,0,0,0,0,0.092,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.8491,Measles,06037,HLT012_42,15000
+181,Day_0181,314,0,0,14671,15,15000,0,0,0,0,0.0258,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2398,Measles,06037,HLT012_42,15000
+182,Day_0182,314,0,0,14671,15,15000,0,0,0,0,0.0472,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.2841,Measles,06037,HLT012_42,15000
+183,Day_0183,314,0,0,14671,15,15000,0,0,0,0,0.1763,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.332,Measles,06037,HLT012_42,15000
+184,Day_0184,314,0,0,14671,15,15000,0,0,0,0,0.1366,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.7235,Measles,06037,HLT012_42,15000
+185,Day_0185,314,0,0,14671,15,15000,0,0,0,0,0.0632,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.7625,Measles,06037,HLT012_42,15000
+186,Day_0186,314,0,0,14671,15,15000,0,0,0,0,0.1343,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.4478,Measles,06037,HLT012_42,15000
+187,Day_0187,314,0,0,14671,15,15000,0,0,0,0,0.1186,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.8357,Measles,06037,HLT012_42,15000
+188,Day_0188,314,0,0,14671,15,15000,0,0,0,0,0.1674,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,24.5897,Measles,06037,HLT012_42,15000
+189,Day_0189,314,0,0,14671,15,15000,0,0,0,0,0.1666,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.8306,Measles,06037,HLT012_42,15000
+190,Day_0190,314,0,0,14671,15,15000,0,0,0,0,0.0135,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.2021,Measles,06037,HLT012_42,15000
+191,Day_0191,314,0,0,14671,15,15000,0,0,0,0,0.2029,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.3747,Measles,06037,HLT012_42,15000
+192,Day_0192,314,0,0,14671,15,15000,0,0,0,0,0.0522,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,21.507,Measles,06037,HLT012_42,15000
+193,Day_0193,314,0,0,14671,15,15000,0,0,0,0,0.0658,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.5159,Measles,06037,HLT012_42,15000
+194,Day_0194,314,0,0,14671,15,15000,0,0,0,0,0.1501,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.4714,Measles,06037,HLT012_42,15000
+195,Day_0195,314,0,0,14671,15,15000,0,0,0,0,0.0864,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,23.2801,Measles,06037,HLT012_42,15000
+196,Day_0196,314,0,0,14671,15,15000,0,0,0,0,0.1313,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.8321,Measles,06037,HLT012_42,15000
+197,Day_0197,314,0,0,14671,15,15000,0,0,0,0,0.2319,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,24.3862,Measles,06037,HLT012_42,15000
+198,Day_0198,314,0,0,14671,15,15000,0,0,0,0,0.0858,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,20.344,Measles,06037,HLT012_42,15000
+199,Day_0199,314,0,0,14671,15,15000,0,0,0,0,0.0604,0.979067,Alpha-proxy,1.5,0.15,1.1,12459,5616,0.551,22.6214,Measles,06037,HLT012_42,15000
+200,Day_0200,314,0,0,14671,15,15000,0,0,0,0,0.0683,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.7214,Measles,06037,HLT012_42,15000
+201,Day_0201,314,0,0,14671,15,15000,0,0,0,0,0.0972,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,27.6079,Measles,06037,HLT012_42,15000
+202,Day_0202,314,0,0,14671,15,15000,0,0,0,0,0.1424,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.9109,Measles,06037,HLT012_42,15000
+203,Day_0203,314,0,0,14671,15,15000,0,0,0,0,0.1084,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.0923,Measles,06037,HLT012_42,15000
+204,Day_0204,314,0,0,14671,15,15000,0,0,0,0,0.041,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.6924,Measles,06037,HLT012_42,15000
+205,Day_0205,314,0,0,14671,15,15000,0,0,0,0,0.1299,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.4971,Measles,06037,HLT012_42,15000
+206,Day_0206,314,0,0,14671,15,15000,0,0,0,0,0.108,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,34.1202,Measles,06037,HLT012_42,15000
+207,Day_0207,314,0,0,14671,15,15000,0,0,0,0,0.1303,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.8255,Measles,06037,HLT012_42,15000
+208,Day_0208,314,0,0,14671,15,15000,0,0,0,0,0.2355,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.3692,Measles,06037,HLT012_42,15000
+209,Day_0209,314,0,0,14671,15,15000,0,0,0,0,0.1952,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,33.4238,Measles,06037,HLT012_42,15000
+210,Day_0210,314,0,0,14671,15,15000,0,0,0,0,0.1346,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.4001,Measles,06037,HLT012_42,15000
+211,Day_0211,314,0,0,14671,15,15000,0,0,0,0,0.1461,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.2185,Measles,06037,HLT012_42,15000
+212,Day_0212,314,0,0,14671,15,15000,0,0,0,0,0.1926,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,33.7086,Measles,06037,HLT012_42,15000
+213,Day_0213,314,0,0,14671,15,15000,0,0,0,0,0.1849,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.8425,Measles,06037,HLT012_42,15000
+214,Day_0214,314,0,0,14671,15,15000,0,0,0,0,0.1296,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,33.5074,Measles,06037,HLT012_42,15000
+215,Day_0215,314,0,0,14671,15,15000,0,0,0,0,0.1285,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.2421,Measles,06037,HLT012_42,15000
+216,Day_0216,314,0,0,14671,15,15000,0,0,0,0,0.2228,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.0934,Measles,06037,HLT012_42,15000
+217,Day_0217,314,0,0,14671,15,15000,0,0,0,0,0.1344,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.0176,Measles,06037,HLT012_42,15000
+218,Day_0218,314,0,0,14671,15,15000,0,0,0,0,0.1302,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.078,Measles,06037,HLT012_42,15000
+219,Day_0219,314,0,0,14671,15,15000,0,0,0,0,0.2086,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.8693,Measles,06037,HLT012_42,15000
+220,Day_0220,314,0,0,14671,15,15000,0,0,0,0,0.2235,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.5763,Measles,06037,HLT012_42,15000
+221,Day_0221,314,0,0,14671,15,15000,0,0,0,0,0.1596,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.0918,Measles,06037,HLT012_42,15000
+222,Day_0222,314,0,0,14671,15,15000,0,0,0,0,0.1605,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,32.7271,Measles,06037,HLT012_42,15000
+223,Day_0223,314,0,0,14671,15,15000,0,0,0,0,0.1104,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,28.535,Measles,06037,HLT012_42,15000
+224,Day_0224,314,0,0,14671,15,15000,0,0,0,0,0.1481,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.194,Measles,06037,HLT012_42,15000
+225,Day_0225,314,0,0,14671,15,15000,0,0,0,0,0.0149,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,34.1537,Measles,06037,HLT012_42,15000
+226,Day_0226,314,0,0,14671,15,15000,0,0,0,0,0.1253,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.3133,Measles,06037,HLT012_42,15000
+227,Day_0227,314,0,0,14671,15,15000,0,0,0,0,0.2344,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,28.5412,Measles,06037,HLT012_42,15000
+228,Day_0228,314,0,0,14671,15,15000,0,0,0,0,0.0434,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,27.2044,Measles,06037,HLT012_42,15000
+229,Day_0229,314,0,0,14671,15,15000,0,0,0,0,0.1766,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,28.9431,Measles,06037,HLT012_42,15000
+230,Day_0230,314,0,0,14671,15,15000,0,0,0,0,0.2529,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,29.9823,Measles,06037,HLT012_42,15000
+231,Day_0231,314,0,0,14671,15,15000,0,0,0,0,0.1484,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.4726,Measles,06037,HLT012_42,15000
+232,Day_0232,314,0,0,14671,15,15000,0,0,0,0,0.1841,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,33.5805,Measles,06037,HLT012_42,15000
+233,Day_0233,314,0,0,14671,15,15000,0,0,0,0,0.1704,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,33.5069,Measles,06037,HLT012_42,15000
+234,Day_0234,314,0,0,14671,15,15000,0,0,0,0,0.0752,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.9333,Measles,06037,HLT012_42,15000
+235,Day_0235,314,0,0,14671,15,15000,0,0,0,0,0.1202,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.4572,Measles,06037,HLT012_42,15000
+236,Day_0236,314,0,0,14671,15,15000,0,0,0,0,0.2612,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.4972,Measles,06037,HLT012_42,15000
+237,Day_0237,314,0,0,14671,15,15000,0,0,0,0,0.1408,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,31.2602,Measles,06037,HLT012_42,15000
+238,Day_0238,314,0,0,14671,15,15000,0,0,0,0,0.1941,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,29.8116,Measles,06037,HLT012_42,15000
+239,Day_0239,314,0,0,14671,15,15000,0,0,0,0,0.2297,0.979067,Delta-proxy,2.1,0.3,1.2,12459,5616,0.551,30.3894,Measles,06037,HLT012_42,15000

pathogen_profiles.json ADDED Viewed

	@@ -0,0 +1,350 @@

+{
+  "SARS-CoV-2": {
+    "R0_base": 2.5,
+    "R0_sigma": 0.3,
+    "serial_interval_mean": 5.1,
+    "serial_interval_sd": 2.6,
+    "incubation_mean": 5.2,
+    "incubation_sigma": 1.4,
+    "infectious_period_mean": 9.0,
+    "infectious_period_sd": 3.0,
+    "symptomatic_fraction": 0.6,
+    "CFR_base": 0.015,
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+    "serial_interval_mean": 5.1,
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+    "R0_sigma": 0.3,
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+      "18-49": 0.0006,
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+  "Novel-Pathogen": {
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+    "serial_interval_mean": 5.1,
+    "serial_interval_sd": 2.6,
+    "incubation_mean": 5.2,
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+    "infectious_period_mean": 9.0,
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+      "18-49": 0.0006,
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+      "50-64": 0.045,
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+  "Smallpox": {
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+    "R0_sigma": 0.3,
+    "serial_interval_mean": 5.1,
+    "serial_interval_sd": 2.6,
+    "incubation_mean": 5.2,
+    "incubation_sigma": 1.4,
+    "infectious_period_mean": 9.0,
+    "infectious_period_sd": 3.0,
+    "symptomatic_fraction": 0.6,
+    "CFR_base": 0.015,
+    "household_SAR": 0.35,
+    "IFR_by_age": {
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+      "18-49": 0.0006,
+      "50-64": 0.0035,
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+      "5-17": 0.002,
+      "18-49": 0.015,
+      "50-64": 0.045,
+      "65-74": 0.085,
+      "75+": 0.13
+    }
+  }
+}

sars_cov2_contact_network.csv ADDED Viewed

The diff for this file is too large to render. See raw diff

sars_cov2_epidemic_timeseries.csv ADDED Viewed

	@@ -0,0 +1,181 @@

+day,date_offset,S,E,I,R,D,N,new_exposed,new_infectious,new_hospitalizations,icu_occupancy,Rt_estimated,attack_rate_cumulative,dominant_variant,variant_R0_mult,variant_immune_escape,variant_severity_mult,n_vaccinated,n_boosted,mean_immunity_level,effective_R0,pathogen,seed_county_fips,simulation_id,total
+0,Day_0000,10049,0,7,4944,0,15000,1,7,0,0,1.4213,0.3296,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5578,SARS-CoV-2,06037,HLT012_42,15000
+1,Day_0001,10048,1,7,4944,0,15000,1,7,0,0,1.5538,0.3296,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5201,SARS-CoV-2,06037,HLT012_42,15000
+2,Day_0002,10047,2,7,4944,0,15000,1,7,0,0,1.5348,0.3296,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5076,SARS-CoV-2,06037,HLT012_42,15000
+3,Day_0003,10046,3,7,4944,0,15000,0,7,0,0,1.4599,0.3296,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.643,SARS-CoV-2,06037,HLT012_42,15000
+4,Day_0004,10046,3,7,4944,0,15000,2,7,0,0,1.3728,0.3296,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3707,SARS-CoV-2,06037,HLT012_42,15000
+5,Day_0005,10044,5,6,4945,0,15000,3,6,0,0,1.4096,0.329667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5549,SARS-CoV-2,06037,HLT012_42,15000
+6,Day_0006,10041,7,5,4947,0,15000,0,5,0,0,1.3792,0.3298,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4125,SARS-CoV-2,06037,HLT012_42,15000
+7,Day_0007,10041,7,5,4947,0,15000,0,5,0,0,1.4229,0.3298,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4347,SARS-CoV-2,06037,HLT012_42,15000
+8,Day_0008,10041,5,6,4948,0,15000,1,6,0,0,1.3978,0.329867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3808,SARS-CoV-2,06037,HLT012_42,15000
+9,Day_0009,10040,2,10,4948,0,15000,3,10,0,0,1.5357,0.329867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.498,SARS-CoV-2,06037,HLT012_42,15000
+10,Day_0010,10037,5,10,4948,0,15000,1,10,0,0,1.2836,0.329867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.2353,SARS-CoV-2,06037,HLT012_42,15000
+11,Day_0011,10036,5,9,4950,0,15000,1,9,0,0,1.4812,0.33,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4594,SARS-CoV-2,06037,HLT012_42,15000
+12,Day_0012,10035,5,10,4950,0,15000,1,10,0,0,1.4905,0.33,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4608,SARS-CoV-2,06037,HLT012_42,15000
+13,Day_0013,10034,6,9,4951,0,15000,0,9,0,0,1.4922,0.330067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.627,SARS-CoV-2,06037,HLT012_42,15000
+14,Day_0014,10034,5,10,4951,0,15000,2,10,0,0,1.3477,0.330067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3392,SARS-CoV-2,06037,HLT012_42,15000
+15,Day_0015,10032,5,10,4953,0,15000,0,10,0,0,1.4784,0.3302,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5542,SARS-CoV-2,06037,HLT012_42,15000
+16,Day_0016,10032,3,11,4954,0,15000,0,11,0,0,1.3296,0.330267,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3951,SARS-CoV-2,06037,HLT012_42,15000
+17,Day_0017,10032,3,10,4955,0,15000,1,10,0,0,1.5031,0.330333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6822,SARS-CoV-2,06037,HLT012_42,15000
+18,Day_0018,10031,3,8,4958,0,15000,2,8,0,0,1.4523,0.330533,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5907,SARS-CoV-2,06037,HLT012_42,15000
+19,Day_0019,10029,5,7,4959,0,15000,2,7,0,0,1.3941,0.3306,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6627,SARS-CoV-2,06037,HLT012_42,15000
+20,Day_0020,10027,6,7,4960,0,15000,0,7,0,0,1.4922,0.330667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4054,SARS-CoV-2,06037,HLT012_42,15000
+21,Day_0021,10027,5,8,4960,0,15000,0,8,0,0,1.2156,0.330667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.266,SARS-CoV-2,06037,HLT012_42,15000
+22,Day_0022,10027,3,8,4962,0,15000,0,8,0,0,1.4691,0.3308,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4906,SARS-CoV-2,06037,HLT012_42,15000
+23,Day_0023,10027,3,8,4962,0,15000,0,8,0,0,1.4023,0.3308,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.377,SARS-CoV-2,06037,HLT012_42,15000
+24,Day_0024,10027,1,9,4963,0,15000,2,9,0,0,1.411,0.330867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6012,SARS-CoV-2,06037,HLT012_42,15000
+25,Day_0025,10025,3,8,4964,0,15000,1,8,0,0,1.331,0.330933,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3714,SARS-CoV-2,06037,HLT012_42,15000
+26,Day_0026,10024,3,7,4966,0,15000,3,7,0,0,1.4413,0.331067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5214,SARS-CoV-2,06037,HLT012_42,15000
+27,Day_0027,10021,6,6,4967,0,15000,1,6,0,0,1.2535,0.331133,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3933,SARS-CoV-2,06037,HLT012_42,15000
+28,Day_0028,10020,7,5,4968,0,15000,1,5,0,0,1.3485,0.3312,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3723,SARS-CoV-2,06037,HLT012_42,15000
+29,Day_0029,10019,6,6,4969,0,15000,1,6,0,0,1.5061,0.331267,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.8069,SARS-CoV-2,06037,HLT012_42,15000
+30,Day_0030,10018,7,5,4970,0,15000,2,5,0,0,1.606,0.331333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.8066,SARS-CoV-2,06037,HLT012_42,15000
+31,Day_0031,10016,8,5,4971,0,15000,2,5,0,0,1.3795,0.3314,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4778,SARS-CoV-2,06037,HLT012_42,15000
+32,Day_0032,10014,7,7,4972,0,15000,2,7,0,0,1.3531,0.331467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4573,SARS-CoV-2,06037,HLT012_42,15000
+33,Day_0033,10012,8,8,4972,0,15000,1,8,0,0,1.2698,0.331467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3005,SARS-CoV-2,06037,HLT012_42,15000
+34,Day_0034,10011,6,11,4972,0,15000,1,11,0,0,1.5643,0.331467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6402,SARS-CoV-2,06037,HLT012_42,15000
+35,Day_0035,10010,6,12,4972,0,15000,1,12,0,0,1.4518,0.331467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.621,SARS-CoV-2,06037,HLT012_42,15000
+36,Day_0036,10009,6,13,4972,0,15000,1,13,0,0,1.4251,0.331467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5441,SARS-CoV-2,06037,HLT012_42,15000
+37,Day_0037,10008,5,14,4973,0,15000,3,14,0,0,1.3842,0.331533,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5512,SARS-CoV-2,06037,HLT012_42,15000
+38,Day_0038,10005,8,13,4974,0,15000,1,13,0,0,1.587,0.3316,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6708,SARS-CoV-2,06037,HLT012_42,15000
+39,Day_0039,10004,7,15,4974,0,15000,1,15,0,0,1.297,0.3316,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.2925,SARS-CoV-2,06037,HLT012_42,15000
+40,Day_0040,10003,7,15,4975,0,15000,1,15,0,0,1.3556,0.331667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4032,SARS-CoV-2,06037,HLT012_42,15000
+41,Day_0041,10002,8,15,4975,0,15000,2,15,0,0,1.3796,0.331667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4073,SARS-CoV-2,06037,HLT012_42,15000
+42,Day_0042,10000,8,13,4979,0,15000,2,13,0,0,1.5961,0.331933,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5046,SARS-CoV-2,06037,HLT012_42,15000
+43,Day_0043,9998,9,14,4979,0,15000,5,14,0,0,1.3998,0.331933,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5128,SARS-CoV-2,06037,HLT012_42,15000
+44,Day_0044,9993,13,13,4981,0,15000,0,13,0,0,1.453,0.332067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5218,SARS-CoV-2,06037,HLT012_42,15000
+45,Day_0045,9993,13,11,4983,0,15000,3,11,0,0,1.3589,0.3322,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5035,SARS-CoV-2,06037,HLT012_42,15000
+46,Day_0046,9990,14,12,4984,0,15000,3,12,0,0,1.3337,0.332267,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3751,SARS-CoV-2,06037,HLT012_42,15000
+47,Day_0047,9987,13,16,4984,0,15000,2,16,0,0,1.3493,0.332267,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4698,SARS-CoV-2,06037,HLT012_42,15000
+48,Day_0048,9985,12,18,4985,0,15000,5,18,0,0,1.5995,0.332333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5866,SARS-CoV-2,06037,HLT012_42,15000
+49,Day_0049,9980,14,19,4987,0,15000,3,19,0,0,1.4046,0.332467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.541,SARS-CoV-2,06037,HLT012_42,15000
+50,Day_0050,9977,16,16,4991,0,15000,2,16,0,0,1.495,0.332733,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.653,SARS-CoV-2,06037,HLT012_42,15000
+51,Day_0051,9975,16,16,4993,0,15000,2,16,0,0,1.3338,0.332867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4064,SARS-CoV-2,06037,HLT012_42,15000
+52,Day_0052,9973,16,18,4993,0,15000,3,18,0,0,1.3295,0.332867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3591,SARS-CoV-2,06037,HLT012_42,15000
+53,Day_0053,9970,14,21,4995,0,15000,1,21,0,0,1.3705,0.333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5138,SARS-CoV-2,06037,HLT012_42,15000
+54,Day_0054,9969,14,20,4997,0,15000,5,20,0,0,1.2701,0.333133,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3988,SARS-CoV-2,06037,HLT012_42,15000
+55,Day_0055,9964,14,22,5000,0,15000,3,22,0,0,1.2209,0.333333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.294,SARS-CoV-2,06037,HLT012_42,15000
+56,Day_0056,9961,13,22,5004,0,15000,3,22,0,0,1.3258,0.3336,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.2303,SARS-CoV-2,06037,HLT012_42,15000
+57,Day_0057,9958,13,25,5004,0,15000,2,25,0,0,1.5868,0.3336,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.562,SARS-CoV-2,06037,HLT012_42,15000
+58,Day_0058,9956,12,28,5004,0,15000,4,28,0,0,1.4482,0.3336,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3877,SARS-CoV-2,06037,HLT012_42,15000
+59,Day_0059,9952,13,29,5006,0,15000,2,29,0,0,1.5275,0.333733,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.589,SARS-CoV-2,06037,HLT012_42,15000
+60,Day_0060,9950,13,30,5007,0,15000,12,30,0,0,1.4258,0.3338,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4549,SARS-CoV-2,06037,HLT012_42,15000
+61,Day_0061,9938,22,30,5010,0,15000,3,30,0,0,1.2434,0.334,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.1925,SARS-CoV-2,06037,HLT012_42,15000
+62,Day_0062,9935,23,28,5014,0,15000,6,28,0,0,1.4988,0.334267,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5076,SARS-CoV-2,06037,HLT012_42,15000
+63,Day_0063,9929,26,27,5018,0,15000,3,27,0,0,1.4429,0.334533,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6224,SARS-CoV-2,06037,HLT012_42,15000
+64,Day_0064,9926,24,31,5019,0,15000,4,31,0,0,1.3456,0.3346,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3859,SARS-CoV-2,06037,HLT012_42,15000
+65,Day_0065,9922,25,30,5023,0,15000,6,30,0,0,1.3886,0.334867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3813,SARS-CoV-2,06037,HLT012_42,15000
+66,Day_0066,9916,25,32,5027,0,15000,4,32,0,0,1.5942,0.335133,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.6605,SARS-CoV-2,06037,HLT012_42,15000
+67,Day_0067,9912,19,39,5030,0,15000,5,39,0,0,1.4627,0.335333,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.507,SARS-CoV-2,06037,HLT012_42,15000
+68,Day_0068,9907,20,41,5032,0,15000,5,41,0,0,1.3931,0.335467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3802,SARS-CoV-2,06037,HLT012_42,15000
+69,Day_0069,9902,23,41,5034,0,15000,8,41,0,0,1.1669,0.3356,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.2405,SARS-CoV-2,06037,HLT012_42,15000
+70,Day_0070,9894,25,43,5038,0,15000,4,43,0,0,1.2845,0.335867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3094,SARS-CoV-2,06037,HLT012_42,15000
+71,Day_0071,9890,27,42,5041,0,15000,7,42,0,0,1.3733,0.336067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5108,SARS-CoV-2,06037,HLT012_42,15000
+72,Day_0072,9883,29,42,5046,0,15000,6,42,0,0,1.2866,0.3364,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.2502,SARS-CoV-2,06037,HLT012_42,15000
+73,Day_0073,9877,31,39,5053,0,15000,9,39,0,0,1.3859,0.336867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4857,SARS-CoV-2,06037,HLT012_42,15000
+74,Day_0074,9868,32,43,5057,0,15000,3,43,0,0,1.3219,0.337133,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3444,SARS-CoV-2,06037,HLT012_42,15000
+75,Day_0075,9865,27,45,5063,0,15000,5,45,0,0,1.3972,0.337533,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3974,SARS-CoV-2,06037,HLT012_42,15000
+76,Day_0076,9860,28,44,5068,0,15000,3,44,0,0,1.3149,0.337867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3366,SARS-CoV-2,06037,HLT012_42,15000
+77,Day_0077,9857,24,46,5073,0,15000,2,46,0,0,1.4032,0.3382,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5184,SARS-CoV-2,06037,HLT012_42,15000
+78,Day_0078,9855,23,45,5077,0,15000,3,45,0,0,1.3425,0.338467,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3621,SARS-CoV-2,06037,HLT012_42,15000
+79,Day_0079,9852,20,47,5081,0,15000,12,47,0,0,1.4987,0.338733,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5527,SARS-CoV-2,06037,HLT012_42,15000
+80,Day_0080,9840,26,49,5085,0,15000,9,49,0,0,1.3471,0.339,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4065,SARS-CoV-2,06037,HLT012_42,15000
+81,Day_0081,9831,27,54,5088,0,15000,4,54,0,0,1.3909,0.3392,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5811,SARS-CoV-2,06037,HLT012_42,15000
+82,Day_0082,9827,26,56,5091,0,15000,8,56,0,0,1.4096,0.3394,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5686,SARS-CoV-2,06037,HLT012_42,15000
+83,Day_0083,9819,30,50,5101,0,15000,10,50,0,0,1.3762,0.340067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5058,SARS-CoV-2,06037,HLT012_42,15000
+84,Day_0084,9809,33,52,5106,0,15000,11,52,0,0,1.4644,0.3404,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5975,SARS-CoV-2,06037,HLT012_42,15000
+85,Day_0085,9798,37,52,5113,0,15000,10,52,0,0,1.2756,0.340867,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3481,SARS-CoV-2,06037,HLT012_42,15000
+86,Day_0086,9788,42,54,5116,0,15000,4,54,0,0,1.2833,0.341067,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3089,SARS-CoV-2,06037,HLT012_42,15000
+87,Day_0087,9784,38,57,5121,0,15000,7,57,0,0,1.3979,0.3414,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.4727,SARS-CoV-2,06037,HLT012_42,15000
+88,Day_0088,9777,37,61,5125,0,15000,17,61,0,0,1.4199,0.341667,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.3568,SARS-CoV-2,06037,HLT012_42,15000
+89,Day_0089,9760,46,64,5130,0,15000,7,64,0,0,1.5129,0.342,Wildtype,1.0,0.0,1.0,4405,2019,0.3294,2.5385,SARS-CoV-2,06037,HLT012_42,15000
+90,Day_0090,9753,43,65,5139,0,15000,10,65,0,0,2.2313,0.3426,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8019,SARS-CoV-2,06037,HLT012_42,15000
+91,Day_0091,9743,44,70,5143,0,15000,12,70,0,0,2.1239,0.342867,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8658,SARS-CoV-2,06037,HLT012_42,15000
+92,Day_0092,9731,48,76,5145,0,15000,11,76,0,0,2.0076,0.343,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7773,SARS-CoV-2,06037,HLT012_42,15000
+93,Day_0093,9720,55,73,5152,0,15000,18,73,0,0,1.9984,0.343467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.607,SARS-CoV-2,06037,HLT012_42,15000
+94,Day_0094,9702,56,81,5161,0,15000,16,81,0,0,1.9798,0.344067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5684,SARS-CoV-2,06037,HLT012_42,15000
+95,Day_0095,9686,62,84,5168,0,15000,19,84,0,0,2.0336,0.344533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6216,SARS-CoV-2,06037,HLT012_42,15000
+96,Day_0096,9667,69,87,5177,0,15000,20,87,0,0,2.2035,0.345133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8482,SARS-CoV-2,06037,HLT012_42,15000
+97,Day_0097,9647,72,96,5185,0,15000,22,96,0,0,2.1815,0.345667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0434,SARS-CoV-2,06037,HLT012_42,15000
+98,Day_0098,9625,84,98,5193,0,15000,19,98,0,0,1.9329,0.3462,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5456,SARS-CoV-2,06037,HLT012_42,15000
+99,Day_0099,9606,90,106,5198,0,15000,21,106,0,0,2.0331,0.346533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7976,SARS-CoV-2,06037,HLT012_42,15000
+100,Day_0100,9585,95,112,5208,0,15000,30,112,0,0,1.9892,0.3472,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6946,SARS-CoV-2,06037,HLT012_42,15000
+101,Day_0101,9555,103,130,5212,0,15000,25,130,0,0,1.8938,0.347467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4643,SARS-CoV-2,06037,HLT012_42,15000
+102,Day_0102,9530,111,138,5221,0,15000,27,138,1,0,2.1368,0.348067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9509,SARS-CoV-2,06037,HLT012_42,15000
+103,Day_0103,9503,118,145,5234,0,15000,35,145,1,0,1.9095,0.348933,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.448,SARS-CoV-2,06037,HLT012_42,15000
+104,Day_0104,9468,138,149,5245,0,15000,33,149,1,0,1.7777,0.349667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4142,SARS-CoV-2,06037,HLT012_42,15000
+105,Day_0105,9435,143,164,5258,0,15000,38,164,1,0,1.9585,0.350533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6859,SARS-CoV-2,06037,HLT012_42,15000
+106,Day_0106,9397,154,181,5268,0,15000,39,181,1,0,2.0381,0.3512,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7867,SARS-CoV-2,06037,HLT012_42,15000
+107,Day_0107,9358,167,188,5286,1,15000,41,188,1,0,2.1505,0.352467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9934,SARS-CoV-2,06037,HLT012_42,15000
+108,Day_0108,9317,172,202,5308,1,15000,42,202,1,0,2.1198,0.353933,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0248,SARS-CoV-2,06037,HLT012_42,15000
+109,Day_0109,9275,178,221,5325,1,15000,53,221,1,0,1.9561,0.355067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6837,SARS-CoV-2,06037,HLT012_42,15000
+110,Day_0110,9222,208,230,5339,1,15000,55,230,1,0,2.0567,0.356,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9107,SARS-CoV-2,06037,HLT012_42,15000
+111,Day_0111,9167,228,250,5354,1,15000,66,250,1,0,2.0125,0.357,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9136,SARS-CoV-2,06037,HLT012_42,15000
+112,Day_0112,9101,244,286,5368,1,15000,63,286,2,0,1.9351,0.357933,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6484,SARS-CoV-2,06037,HLT012_42,15000
+113,Day_0113,9038,261,310,5390,1,15000,72,310,2,0,1.8826,0.3594,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.742,SARS-CoV-2,06037,HLT012_42,15000
+114,Day_0114,8966,284,330,5418,2,15000,72,330,2,0,1.9716,0.361333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0159,SARS-CoV-2,06037,HLT012_42,15000
+115,Day_0115,8894,286,368,5450,2,15000,81,368,2,0,1.9876,0.363467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8951,SARS-CoV-2,06037,HLT012_42,15000
+116,Day_0116,8813,312,392,5480,3,15000,75,392,3,0,2.0485,0.365533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0294,SARS-CoV-2,06037,HLT012_42,15000
+117,Day_0117,8738,334,416,5509,3,15000,88,416,3,0,1.8125,0.367467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6777,SARS-CoV-2,06037,HLT012_42,15000
+118,Day_0118,8650,358,452,5536,4,15000,92,452,3,0,1.7507,0.369333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6998,SARS-CoV-2,06037,HLT012_42,15000
+119,Day_0119,8558,384,486,5568,4,15000,98,486,3,0,1.6161,0.371467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.3951,SARS-CoV-2,06037,HLT012_42,15000
+120,Day_0120,8460,403,536,5596,5,15000,106,536,4,0,1.8908,0.3734,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9357,SARS-CoV-2,06037,HLT012_42,15000
+121,Day_0121,8354,437,567,5636,6,15000,126,567,4,0,1.8597,0.376133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9351,SARS-CoV-2,06037,HLT012_42,15000
+122,Day_0122,8228,485,608,5673,6,15000,115,608,4,0,1.8916,0.3786,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0724,SARS-CoV-2,06037,HLT012_42,15000
+123,Day_0123,8113,509,646,5726,6,15000,129,646,5,1,1.6033,0.382133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.537,SARS-CoV-2,06037,HLT012_42,15000
+124,Day_0124,7984,537,680,5793,6,15000,129,680,5,1,1.6624,0.3866,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7714,SARS-CoV-2,06037,HLT012_42,15000
+125,Day_0125,7855,575,714,5849,7,15000,144,714,5,1,1.7963,0.3904,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8334,SARS-CoV-2,06037,HLT012_42,15000
+126,Day_0126,7711,603,773,5905,8,15000,128,773,5,1,1.6268,0.3942,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7622,SARS-CoV-2,06037,HLT012_42,15000
+127,Day_0127,7583,607,838,5961,11,15000,147,838,6,1,1.5252,0.398133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5839,SARS-CoV-2,06037,HLT012_42,15000
+128,Day_0128,7436,628,900,6025,11,15000,168,900,6,1,1.5098,0.4024,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7054,SARS-CoV-2,06037,HLT012_42,15000
+129,Day_0129,7268,682,945,6092,13,15000,174,945,7,1,1.5396,0.407,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7753,SARS-CoV-2,06037,HLT012_42,15000
+130,Day_0130,7094,727,994,6170,15,15000,182,994,7,1,1.4732,0.412333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7904,SARS-CoV-2,06037,HLT012_42,15000
+131,Day_0131,6912,773,1040,6259,16,15000,147,1040,7,1,1.2339,0.418333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4359,SARS-CoV-2,06037,HLT012_42,15000
+132,Day_0132,6765,755,1119,6345,16,15000,166,1119,8,1,1.2388,0.424067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4514,SARS-CoV-2,06037,HLT012_42,15000
+133,Day_0133,6599,780,1166,6439,16,15000,194,1166,8,1,1.4779,0.430333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8911,SARS-CoV-2,06037,HLT012_42,15000
+134,Day_0134,6405,792,1260,6526,17,15000,175,1260,9,1,1.2491,0.4362,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4485,SARS-CoV-2,06037,HLT012_42,15000
+135,Day_0135,6230,802,1327,6623,18,15000,170,1327,9,1,1.137,0.442733,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5215,SARS-CoV-2,06037,HLT012_42,15000
+136,Day_0136,6060,818,1355,6747,20,15000,186,1355,10,2,1.0805,0.451133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.3833,SARS-CoV-2,06037,HLT012_42,15000
+137,Day_0137,5874,835,1394,6876,21,15000,174,1394,10,2,1.1789,0.4598,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.607,SARS-CoV-2,06037,HLT012_42,15000
+138,Day_0138,5700,840,1445,6994,21,15000,169,1445,10,2,1.0705,0.467667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4764,SARS-CoV-2,06037,HLT012_42,15000
+139,Day_0139,5531,835,1506,7105,23,15000,237,1506,11,2,1.1367,0.4752,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.86,SARS-CoV-2,06037,HLT012_42,15000
+140,Day_0140,5294,881,1554,7245,26,15000,177,1554,11,2,0.9068,0.484733,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5261,SARS-CoV-2,06037,HLT012_42,15000
+141,Day_0141,5117,889,1594,7374,26,15000,168,1594,11,2,0.9433,0.493333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5291,SARS-CoV-2,06037,HLT012_42,15000
+142,Day_0142,4949,881,1620,7522,28,15000,201,1620,12,2,1.0008,0.503333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8106,SARS-CoV-2,06037,HLT012_42,15000
+143,Day_0143,4748,897,1641,7686,28,15000,189,1641,12,2,0.979,0.514267,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9632,SARS-CoV-2,06037,HLT012_42,15000
+144,Day_0144,4559,904,1669,7838,30,15000,154,1669,12,2,0.8382,0.524533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5597,SARS-CoV-2,06037,HLT012_42,15000
+145,Day_0145,4405,843,1733,7987,32,15000,142,1733,13,2,0.7959,0.5346,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6319,SARS-CoV-2,06037,HLT012_42,15000
+146,Day_0146,4263,793,1766,8146,32,15000,170,1766,13,2,0.7826,0.5452,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8024,SARS-CoV-2,06037,HLT012_42,15000
+147,Day_0147,4093,790,1751,8333,33,15000,145,1751,13,2,0.6188,0.557733,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6319,SARS-CoV-2,06037,HLT012_42,15000
+148,Day_0148,3948,757,1754,8507,34,15000,163,1754,13,2,0.6563,0.5694,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7362,SARS-CoV-2,06037,HLT012_42,15000
+149,Day_0149,3785,738,1744,8694,39,15000,151,1744,13,2,0.727,0.5822,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.842,SARS-CoV-2,06037,HLT012_42,15000
+150,Day_0150,3634,721,1727,8877,41,15000,138,1727,13,2,0.7593,0.594533,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8149,SARS-CoV-2,06037,HLT012_42,15000
+151,Day_0151,3496,688,1719,9056,41,15000,121,1719,13,2,0.6927,0.606467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6599,SARS-CoV-2,06037,HLT012_42,15000
+152,Day_0152,3375,674,1683,9226,42,15000,108,1683,13,2,0.6391,0.617867,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8062,SARS-CoV-2,06037,HLT012_42,15000
+153,Day_0153,3267,627,1665,9396,45,15000,114,1665,12,2,0.4954,0.6294,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.913,SARS-CoV-2,06037,HLT012_42,15000
+154,Day_0154,3153,598,1593,9609,47,15000,119,1593,12,2,0.5082,0.643733,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5959,SARS-CoV-2,06037,HLT012_42,15000
+155,Day_0155,3034,577,1569,9772,48,15000,118,1569,12,2,0.5085,0.654667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8938,SARS-CoV-2,06037,HLT012_42,15000
+156,Day_0156,2916,567,1511,9954,52,15000,94,1511,11,2,0.5212,0.667067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7709,SARS-CoV-2,06037,HLT012_42,15000
+157,Day_0157,2822,534,1459,10132,53,15000,91,1459,11,2,0.4667,0.679,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7514,SARS-CoV-2,06037,HLT012_42,15000
+158,Day_0158,2731,497,1406,10312,54,15000,75,1406,10,2,0.4446,0.691067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7862,SARS-CoV-2,06037,HLT012_42,15000
+159,Day_0159,2656,465,1339,10482,58,15000,78,1339,10,2,0.4888,0.702667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8543,SARS-CoV-2,06037,HLT012_42,15000
+160,Day_0160,2578,429,1303,10630,60,15000,66,1303,10,2,0.4384,0.712667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6295,SARS-CoV-2,06037,HLT012_42,15000
+161,Day_0161,2512,383,1270,10775,60,15000,64,1270,9,1,0.3868,0.722333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.546,SARS-CoV-2,06037,HLT012_42,15000
+162,Day_0162,2448,364,1201,10926,61,15000,53,1201,9,1,0.3976,0.732467,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9184,SARS-CoV-2,06037,HLT012_42,15000
+163,Day_0163,2395,343,1104,11097,61,15000,51,1104,8,1,0.4482,0.743867,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9603,SARS-CoV-2,06037,HLT012_42,15000
+164,Day_0164,2344,296,1060,11239,61,15000,56,1060,8,1,0.4253,0.753333,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5488,SARS-CoV-2,06037,HLT012_42,15000
+165,Day_0165,2288,267,1024,11358,63,15000,49,1024,7,1,0.3772,0.7614,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7245,SARS-CoV-2,06037,HLT012_42,15000
+166,Day_0166,2239,257,966,11474,64,15000,44,966,7,1,0.3502,0.7692,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.4925,SARS-CoV-2,06037,HLT012_42,15000
+167,Day_0167,2195,240,906,11592,67,15000,43,906,7,1,0.2887,0.777267,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5401,SARS-CoV-2,06037,HLT012_42,15000
+168,Day_0168,2152,229,845,11706,68,15000,31,845,6,1,0.3543,0.784933,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0177,SARS-CoV-2,06037,HLT012_42,15000
+169,Day_0169,2121,210,772,11829,68,15000,28,772,6,1,0.3814,0.793133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.717,SARS-CoV-2,06037,HLT012_42,15000
+170,Day_0170,2093,188,703,11948,68,15000,32,703,5,1,0.3693,0.801067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,4.0186,SARS-CoV-2,06037,HLT012_42,15000
+171,Day_0171,2061,169,669,12033,68,15000,35,669,5,1,0.2972,0.806733,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7191,SARS-CoV-2,06037,HLT012_42,15000
+172,Day_0172,2026,159,623,12123,69,15000,26,623,5,1,0.3428,0.8128,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9943,SARS-CoV-2,06037,HLT012_42,15000
+173,Day_0173,2000,148,572,12211,69,15000,19,572,4,0,0.2365,0.818667,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.7684,SARS-CoV-2,06037,HLT012_42,15000
+174,Day_0174,1981,133,538,12279,69,15000,17,538,4,0,0.3171,0.8232,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.8018,SARS-CoV-2,06037,HLT012_42,15000
+175,Day_0175,1964,117,493,12357,69,15000,17,493,3,0,0.383,0.8284,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6866,SARS-CoV-2,06037,HLT012_42,15000
+176,Day_0176,1947,105,456,12423,69,15000,16,456,3,0,0.3227,0.8328,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.77,SARS-CoV-2,06037,HLT012_42,15000
+177,Day_0177,1931,92,420,12487,70,15000,11,420,3,0,0.272,0.837133,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.5293,SARS-CoV-2,06037,HLT012_42,15000
+178,Day_0178,1920,83,393,12532,72,15000,15,393,3,0,0.3564,0.840267,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.6497,SARS-CoV-2,06037,HLT012_42,15000
+179,Day_0179,1905,74,360,12589,72,15000,15,360,2,0,0.2512,0.844067,Alpha-proxy,1.5,0.15,1.1,4405,2019,0.3294,3.9474,SARS-CoV-2,06037,HLT012_42,15000