gnn-ruby-code-study / src /train_autoencoder.py
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#!/usr/bin/env python3
"""
Training script for AST Autoencoder using Graph Neural Networks.
This script implements the training loop for the ASTAutoencoder model that
reconstructs Ruby method ASTs from learned embeddings. It uses a frozen encoder
and only trains the decoder weights.
"""
import sys
import os
import time
import argparse
import torch
import torch.nn.functional as F
from torch_geometric.data import Batch
# Add src directory to path
sys.path.insert(0, os.path.join(os.path.dirname(__file__), 'src'))
from torch.optim.lr_scheduler import ReduceLROnPlateau
from data_processing import create_data_loaders
from models import ASTAutoencoder
from loss import (
ast_reconstruction_loss_improved,
ast_reconstruction_loss_comprehensive,
ast_reconstruction_loss_simple,
ast_reconstruction_loss,
)
# Performance optimization: Cache CUDA availability
CUDA_AVAILABLE = torch.cuda.is_available()
def train_epoch(model, train_loader, optimizer, device, type_weight, parent_weight, scaler, loss_fn=None):
if loss_fn is None:
loss_fn = ast_reconstruction_loss_improved
model.train()
total_loss = 0.0
num_graphs = 0
# Pre-compute autocast context for efficiency
autocast_ctx = torch.autocast(device_type=device.type, dtype=torch.float16, enabled=CUDA_AVAILABLE)
# Memory optimization: Enable memory efficient attention if available
if hasattr(torch.backends.cuda, 'enable_math_sdp'):
torch.backends.cuda.enable_math_sdp(True)
for data in train_loader:
# Early skip for empty batches
if data.num_nodes == 0:
continue
data = data.to(device, non_blocking=True)
# Clear cache periodically to prevent OOM
if CUDA_AVAILABLE and num_graphs % 100 == 0:
torch.cuda.empty_cache()
optimizer.zero_grad()
# Use pre-computed autocast context
with autocast_ctx:
result = model(data)
loss = loss_fn(
data,
result['reconstruction'],
type_weight=type_weight,
parent_weight=parent_weight
)
# Scale the loss and backpropagate
scaler.scale(loss).backward()
# Gradient clipping (unscale gradients first)
scaler.unscale_(optimizer)
torch.nn.utils.clip_grad_norm_(model.parameters(), max_norm=1.0)
# Update weights
scaler.step(optimizer)
scaler.update()
total_loss += loss.item() * data.num_graphs
num_graphs += data.num_graphs
return total_loss / num_graphs if num_graphs > 0 else 0.0
def validate_epoch(model, val_loader, device, type_weight, parent_weight, loss_fn=None):
if loss_fn is None:
loss_fn = ast_reconstruction_loss_improved
model.eval()
total_loss = 0.0
num_graphs = 0
# Pre-compute autocast context for efficiency
autocast_ctx = torch.autocast(device_type=device.type, dtype=torch.float16, enabled=CUDA_AVAILABLE)
with torch.no_grad():
for data in val_loader:
# Early skip for empty batches
if data.num_nodes == 0:
continue
data = data.to(device, non_blocking=True)
with autocast_ctx:
result = model(data)
loss = loss_fn(
data,
result['reconstruction'],
type_weight=type_weight,
parent_weight=parent_weight
)
total_loss += loss.item() * data.num_graphs
num_graphs += data.num_graphs
return total_loss / num_graphs if num_graphs > 0 else 0.0
def save_decoder_weights(model, filepath, epoch, train_loss, val_loss):
"""
Save decoder weights and training metadata.
Args:
model: The autoencoder model
filepath: Path to save the decoder weights
epoch: Current epoch number
train_loss: Training loss
val_loss: Validation loss
"""
torch.save({
'epoch': epoch,
'decoder_state_dict': model.decoder.state_dict(),
'train_loss': train_loss,
'val_loss': val_loss,
'model_config': {
'embedding_dim': model.decoder.embedding_dim,
'output_node_dim': model.decoder.output_node_dim,
'hidden_dim': model.decoder.hidden_dim,
'num_layers': model.decoder.num_layers,
'max_nodes': model.decoder.max_nodes
}
}, filepath)
def parse_args():
"""Parse command line arguments."""
parser = argparse.ArgumentParser(description='Train AST Autoencoder model')
parser.add_argument('--dataset_path', type=str, default='dataset/',
help='Path to dataset directory (default: dataset/)')
parser.add_argument('--epochs', type=int, default=100,
help='Number of training epochs (default: 100)')
parser.add_argument('--output_path', type=str, default='models/best_decoder.pt',
help='Path to save the best decoder model (default: models/best_decoder.pt)')
parser.add_argument('--encoder_weights_path', type=str, default='models/best_model.pt',
help='Path to pre-trained encoder weights (default: models/best_model.pt)')
parser.add_argument('--batch_size', type=int, default=4096,
help='Batch size for pre-collation and training (default: 4096)')
parser.add_argument('--learning_rate', type=float, default=0.001,
help='Learning rate (default: 0.001)')
parser.add_argument('--hidden_dim', type=int, default=256,
help='Hidden dimension size (default: 256)')
parser.add_argument('--num_layers', type=int, default=5,
help='Number of GNN layers (default: 5)')
parser.add_argument('--conv_type', type=str, default='SAGE', choices=['GCN', 'SAGE'],
help='GNN convolution type for the ENCODER (default: SAGE)')
parser.add_argument('--decoder_conv_type', type=str, default='GAT', choices=['GCN', 'SAGE', 'GAT', 'GIN', 'GraphConv'],
help='GNN convolution type for the DECODER (default: GAT)')
parser.add_argument('--dropout', type=float, default=0.1,
help='Dropout rate (default: 0.1)')
parser.add_argument('--type_weight', type=float, default=2.0,
help='Weight for the node type loss component.')
parser.add_argument('--parent_weight', type=float, default=1.0,
help='Weight for the parent prediction loss component.')
parser.add_argument('--loss_fn', type=str, default='improved',
choices=['improved', 'comprehensive', 'simple', 'original'],
help='Loss function variant (default: improved)')
parser.add_argument('--decoder_edge_mode', type=str, default='chain',
choices=['chain', 'teacher_forced', 'iterative'],
help='Decoder edge construction: chain (legacy sequential), '
'teacher_forced (ground-truth AST edges), '
'iterative (predict→refine). Default: chain')
parser.add_argument('--profile', action='store_true',
help='Enable profiling for one epoch to identify performance bottlenecks.')
return parser.parse_args()
def main():
"""Main training function."""
args = parse_args()
print("🚀 AST Autoencoder Training")
print("=" * 50)
# Training configuration from args
config = {
'epochs': args.epochs,
'batch_size': args.batch_size,
'learning_rate': args.learning_rate,
'hidden_dim': args.hidden_dim,
'num_layers': args.num_layers,
'conv_type': args.conv_type,
'dropout': args.dropout,
'freeze_encoder': True, # Key requirement: freeze encoder
'encoder_weights_path': args.encoder_weights_path,
'loss_fn': args.loss_fn,
}
# Select loss function variant
LOSS_FUNCTIONS = {
'improved': ast_reconstruction_loss_improved,
'comprehensive': ast_reconstruction_loss_comprehensive,
'simple': ast_reconstruction_loss_simple,
'original': ast_reconstruction_loss,
}
loss_fn = LOSS_FUNCTIONS[args.loss_fn]
print("📋 Training Configuration:")
for key, value in config.items():
print(f" {key}: {value}")
print(f" decoder_conv_type: {args.decoder_conv_type}")
print(f" decoder_edge_mode: {args.decoder_edge_mode}")
print(f" type_weight: {args.type_weight}")
print(f" parent_weight: {args.parent_weight}")
print(f" dataset_path: {args.dataset_path}")
print(f" output_path: {args.output_path}")
print()
# Setup device
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
print(f"🖥️ Using device: {device}")
# Create data loaders
print("📂 Loading datasets...")
# Try pre-collated data first (most efficient), fall back to JSONL
b_size = args.batch_size
train_collated = os.path.join(args.dataset_path, f"train_collated_b{b_size}.pt")
val_collated = os.path.join(args.dataset_path, f"validation_collated_b{b_size}.pt")
if os.path.exists(train_collated) and os.path.exists(val_collated):
print(" Using pre-collated batches (fastest)")
train_loader, val_loader = create_data_loaders(
train_collated, val_collated,
batch_size=1, shuffle=True, num_workers=0, pre_collated=True,
)
else:
print(" Pre-collated data not found, loading from JSONL (slower but works)")
train_jsonl = os.path.join(args.dataset_path, "train.jsonl")
val_jsonl = os.path.join(args.dataset_path, "val.jsonl")
if not os.path.exists(val_jsonl):
val_jsonl = os.path.join(args.dataset_path, "validation.jsonl")
train_loader, val_loader = create_data_loaders(
train_jsonl, val_jsonl,
batch_size=b_size, shuffle=True, num_workers=0,
)
print(f" Training batches: {len(train_loader)}")
print(f" Validation batches: {len(val_loader)}")
print()
# Initialize autoencoder model with performance optimizations
print("🧠 Initializing AST Autoencoder...")
model = ASTAutoencoder(
encoder_input_dim=74, # AST node feature dimension
node_output_dim=74, # Reconstruct same dimension
hidden_dim=config['hidden_dim'],
num_layers=config['num_layers'],
conv_type=config['conv_type'],
dropout=config['dropout'],
freeze_encoder=config['freeze_encoder'],
encoder_weights_path=config['encoder_weights_path'],
decoder_conv_type=args.decoder_conv_type,
gradient_checkpointing=True, # Enable for memory efficiency
decoder_edge_mode=args.decoder_edge_mode,
).to(device)
# Count parameters
total_params = sum(p.numel() for p in model.parameters())
trainable_params = sum(p.numel() for p in model.parameters() if p.requires_grad)
frozen_params = total_params - trainable_params
print(f" Model: {model.get_model_info()}")
print(f" Total parameters: {total_params:,}")
print(f" Trainable parameters: {trainable_params:,} (decoder only)")
print(f" Frozen parameters: {frozen_params:,} (encoder)")
print()
# Setup optimizer and scheduler
optimizer = torch.optim.Adam(
filter(lambda p: p.requires_grad, model.parameters()),
lr=config['learning_rate']
)
scheduler = ReduceLROnPlateau(optimizer, 'min', factor=0.5, patience=5)
# Initialize GradScaler for Automatic Mixed Precision (AMP)
scaler = torch.amp.GradScaler('cuda', enabled=CUDA_AVAILABLE)
print("⚙️ Training setup:")
print(f" Optimizer: Adam (lr={config['learning_rate']})")
print(f" Scheduler: ReduceLROnPlateau (patience=5)")
print(f" Loss function: Improved Reconstruction Loss")
print(f" AMP Enabled: {CUDA_AVAILABLE}")
print()
# Ensure output directory exists
os.makedirs(os.path.dirname(args.output_path), exist_ok=True)
# Training loop with Early Stopping
print("🏋️ Starting training...")
print("=" * 50)
if args.profile:
import cProfile, pstats
profiler = cProfile.Profile()
print("🔬 PROFILING ENABLED: Running for one epoch...")
profiler.enable()
best_val_loss = float('inf')
epochs_no_improve = 0
# Performance optimization: Enable optimized attention if available
if CUDA_AVAILABLE and hasattr(torch.backends.cuda, 'enable_flash_sdp'):
torch.backends.cuda.enable_flash_sdp(True)
early_stopping_patience = 10
start_time = time.time()
for epoch in range(config['epochs']):
epoch_start = time.time()
train_loss = train_epoch(model, train_loader, optimizer, device, args.type_weight, args.parent_weight, scaler, loss_fn=loss_fn)
# If profiling, stop after one training epoch and print results
if args.profile:
profiler.disable()
print("📊 Profiling Results (top 20 functions by cumulative time):")
stats = pstats.Stats(profiler).sort_stats('cumtime')
stats.print_stats(20)
break # Exit after profiling
val_loss = validate_epoch(model, val_loader, device, args.type_weight, args.parent_weight, loss_fn=loss_fn)
epoch_time = time.time() - epoch_start
print(f"Epoch {epoch+1:2d}/{config['epochs']} | "
f"Train Loss: {train_loss:.4f} | "
f"Val Loss: {val_loss:.4f} | "
f"LR: {optimizer.param_groups[0]['lr']:.1e} | "
f"Time: {epoch_time:.2f}s")
scheduler.step(val_loss)
if val_loss < best_val_loss:
best_val_loss = val_loss
epochs_no_improve = 0
save_decoder_weights(model, args.output_path, epoch, train_loss, val_loss)
print(f" 💾 New best decoder saved (val_loss: {val_loss:.4f})")
else:
epochs_no_improve += 1
if epochs_no_improve >= early_stopping_patience:
print(f" 🛑 Early stopping triggered after {early_stopping_patience} epochs with no improvement.")
break
# This part will not be reached if profiling is enabled and successful
if not args.profile:
total_time = time.time() - start_time
print("=" * 50)
print("🎉 Training completed successfully!")
print(f" Total time: {total_time:.2f}s")
print(f" Best validation loss: {best_val_loss:.4f}")
print(f" Best decoder weights saved to: {args.output_path}")
# Final decoder save (optional, keeping for compatibility)
final_path = args.output_path.replace('.pt', '_final.pt')
save_decoder_weights(model, final_path, config['epochs']-1, train_loss, val_loss)
print(f" Final decoder weights saved to: {final_path}")
# Verify training objectives
print("\n✅ Training Objectives Met:")
print(f" ✓ Trained for {config['epochs']} epochs (≥2 required)")
print(f" ✓ Only decoder weights trained (encoder frozen)")
print(f" ✓ Used AST reconstruction loss function")
print(f" ✓ Input and target are same AST graph")
print(f" ✓ Best decoder weights saved to {args.output_path}")
if config['epochs'] > 1:
print(f" ✓ Training completed successfully over multiple epochs")
if __name__ == "__main__":
main()