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  1. .gitattributes +8 -0
  2. Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/kiwisolver/_cext.cpython-310-x86_64-linux-gnu.so +3 -0
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Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/networkx-3.4.2.dist-info/LICENSE.txt ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ NetworkX is distributed with the 3-clause BSD license.
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+
3
+ ::
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+
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+ Copyright (C) 2004-2024, NetworkX Developers
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+ Aric Hagberg <hagberg@lanl.gov>
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+ Dan Schult <dschult@colgate.edu>
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+ Pieter Swart <swart@lanl.gov>
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+ All rights reserved.
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+
11
+ Redistribution and use in source and binary forms, with or without
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+ modification, are permitted provided that the following conditions are
13
+ met:
14
+
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+ * Redistributions of source code must retain the above copyright
16
+ notice, this list of conditions and the following disclaimer.
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+
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+ * Redistributions in binary form must reproduce the above
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+ copyright notice, this list of conditions and the following
20
+ disclaimer in the documentation and/or other materials provided
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+ with the distribution.
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+
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+ * Neither the name of the NetworkX Developers nor the names of its
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+ contributors may be used to endorse or promote products derived
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+ from this software without specific prior written permission.
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+
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+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
29
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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+ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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+ Metadata-Version: 2.1
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+ Name: networkx
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+ Version: 3.4.2
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+ Summary: Python package for creating and manipulating graphs and networks
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+ Author-email: Aric Hagberg <hagberg@lanl.gov>
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+ Maintainer-email: NetworkX Developers <networkx-discuss@googlegroups.com>
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+ Project-URL: Homepage, https://networkx.org/
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+ Project-URL: Bug Tracker, https://github.com/networkx/networkx/issues
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+ Project-URL: Documentation, https://networkx.org/documentation/stable/
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+ Project-URL: Source Code, https://github.com/networkx/networkx
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+ Keywords: Networks,Graph Theory,Mathematics,network,graph,discrete mathematics,math
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+ Platform: Linux
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+ Platform: Mac OSX
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+ Platform: Windows
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+ Platform: Unix
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+ Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: BSD License
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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+ Classifier: Topic :: Scientific/Engineering :: Information Analysis
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+ Classifier: Topic :: Scientific/Engineering :: Mathematics
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+ Classifier: Topic :: Scientific/Engineering :: Physics
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/x-rst
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+ License-File: LICENSE.txt
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+ Provides-Extra: default
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+ Requires-Dist: numpy >=1.24 ; extra == 'default'
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+ Requires-Dist: scipy !=1.11.0,!=1.11.1,>=1.10 ; extra == 'default'
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+ Requires-Dist: matplotlib >=3.7 ; extra == 'default'
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+ Requires-Dist: pandas >=2.0 ; extra == 'default'
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+ Provides-Extra: developer
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+ Requires-Dist: numpydoc >=1.8.0 ; extra == 'doc'
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+ Requires-Dist: pillow >=9.4 ; extra == 'doc'
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+ Requires-Dist: texext >=0.6.7 ; extra == 'doc'
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+ Requires-Dist: myst-nb >=1.1 ; extra == 'doc'
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+ Requires-Dist: intersphinx-registry ; extra == 'doc'
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+ Provides-Extra: example
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+ Requires-Dist: momepy >=0.7.2 ; extra == 'example'
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+ Requires-Dist: contextily >=1.6 ; extra == 'example'
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+ Requires-Dist: seaborn >=0.13 ; extra == 'example'
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+ Requires-Dist: cairocffi >=1.7 ; extra == 'example'
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+ Requires-Dist: igraph >=0.11 ; extra == 'example'
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+ Requires-Dist: scikit-learn >=1.5 ; extra == 'example'
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+ Provides-Extra: extra
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+ Requires-Dist: lxml >=4.6 ; extra == 'extra'
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+ Requires-Dist: pygraphviz >=1.14 ; extra == 'extra'
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+ Requires-Dist: pydot >=3.0.1 ; extra == 'extra'
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+ Requires-Dist: sympy >=1.10 ; extra == 'extra'
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+ Provides-Extra: test
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+ Requires-Dist: pytest >=7.2 ; extra == 'test'
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+ Requires-Dist: pytest-cov >=4.0 ; extra == 'test'
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+
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+ NetworkX
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+ ========
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+
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+
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+ .. image::
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+ https://github.com/networkx/networkx/workflows/test/badge.svg?branch=main
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+ :target: https://github.com/networkx/networkx/actions?query=workflow%3Atest
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+
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+ .. image::
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+ https://codecov.io/gh/networkx/networkx/branch/main/graph/badge.svg?
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+ :target: https://app.codecov.io/gh/networkx/networkx/branch/main
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+
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+ .. image::
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+ https://img.shields.io/pypi/v/networkx.svg?
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+ :target: https://pypi.python.org/pypi/networkx
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+
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+ .. image::
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+ https://img.shields.io/pypi/l/networkx.svg?
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+ :target: https://github.com/networkx/networkx/blob/main/LICENSE.txt
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+
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+ .. image::
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+ https://img.shields.io/pypi/pyversions/networkx.svg?
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+ :target: https://pypi.python.org/pypi/networkx
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+
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+ .. image::
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+ https://img.shields.io/github/labels/networkx/networkx/good%20first%20issue?color=green&label=contribute
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+ :target: https://github.com/networkx/networkx/contribute
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+
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+
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+ NetworkX is a Python package for the creation, manipulation,
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+ and study of the structure, dynamics, and functions
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+ of complex networks.
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+
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+ - **Website (including documentation):** https://networkx.org
105
+ - **Mailing list:** https://groups.google.com/forum/#!forum/networkx-discuss
106
+ - **Source:** https://github.com/networkx/networkx
107
+ - **Bug reports:** https://github.com/networkx/networkx/issues
108
+ - **Report a security vulnerability:** https://tidelift.com/security
109
+ - **Tutorial:** https://networkx.org/documentation/latest/tutorial.html
110
+ - **GitHub Discussions:** https://github.com/networkx/networkx/discussions
111
+ - **Discord (Scientific Python) invite link:** https://discord.com/invite/vur45CbwMz
112
+ - **NetworkX meetings calendar (open to all):** https://scientific-python.org/calendars/networkx.ics
113
+
114
+ Simple example
115
+ --------------
116
+
117
+ Find the shortest path between two nodes in an undirected graph:
118
+
119
+ .. code:: pycon
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+
121
+ >>> import networkx as nx
122
+ >>> G = nx.Graph()
123
+ >>> G.add_edge("A", "B", weight=4)
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+ >>> G.add_edge("B", "D", weight=2)
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+ >>> G.add_edge("A", "C", weight=3)
126
+ >>> G.add_edge("C", "D", weight=4)
127
+ >>> nx.shortest_path(G, "A", "D", weight="weight")
128
+ ['A', 'B', 'D']
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+
130
+ Install
131
+ -------
132
+
133
+ Install the latest released version of NetworkX:
134
+
135
+ .. code:: shell
136
+
137
+ $ pip install networkx
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+
139
+ Install with all optional dependencies:
140
+
141
+ .. code:: shell
142
+
143
+ $ pip install networkx[default]
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+
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+ For additional details,
146
+ please see the `installation guide <https://networkx.org/documentation/stable/install.html>`_.
147
+
148
+ Bugs
149
+ ----
150
+
151
+ Please report any bugs that you find `here <https://github.com/networkx/networkx/issues>`_.
152
+ Or, even better, fork the repository on `GitHub <https://github.com/networkx/networkx>`_
153
+ and create a pull request (PR). We welcome all changes, big or small, and we
154
+ will help you make the PR if you are new to `git` (just ask on the issue and/or
155
+ see the `contributor guide <https://networkx.org/documentation/latest/developer/contribute.html>`_).
156
+
157
+ License
158
+ -------
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+
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+ Released under the `3-Clause BSD license <https://github.com/networkx/networkx/blob/main/LICENSE.txt>`_::
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+
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+ Copyright (C) 2004-2024 NetworkX Developers
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+ Aric Hagberg <hagberg@lanl.gov>
164
+ Dan Schult <dschult@colgate.edu>
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+ Pieter Swart <swart@lanl.gov>
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+ networkx/readwrite/text.py,sha256=9u43d_m2xcoJKl5rKQ-3N0kIdr3m4xzX2i1y05xDDbM,29163
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+ networkx/relabel.py,sha256=0HptAQOBToKhLZzxscd6FQpzVCNMlYmiHjHul69ct8o,10300
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+ networkx/tests/test_convert.py,sha256=SoIVrqJFF9Gu9Jff_apfbpqg8QhkfC6QW4qzoSM-ukM,12731
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+ networkx/utils/tests/test_unionfind.py,sha256=j-DF5XyeJzq1hoeAgN5Nye2Au7EPD040t8oS4Aw2IwU,1579
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+ networkx/utils/union_find.py,sha256=NxKlBlyS71A1Wlnt28L-wyZoI9ExZvJth_0e2XSVris,3338
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/networkx-3.4.2.dist-info/REQUESTED ADDED
File without changes
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/networkx-3.4.2.dist-info/WHEEL ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ Wheel-Version: 1.0
2
+ Generator: setuptools (75.2.0)
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
5
+
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/networkx-3.4.2.dist-info/entry_points.txt ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ [networkx.backends]
2
+ nx_loopback = networkx.classes.tests.dispatch_interface:backend_interface
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/networkx-3.4.2.dist-info/top_level.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ networkx
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/__pycache__/__init__.cpython-310.pyc ADDED
Binary file (7.01 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/__pycache__/_typing.cpython-310.pyc ADDED
Binary file (11.6 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/__pycache__/_version_meson.cpython-310.pyc ADDED
Binary file (312 Bytes). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/__pycache__/testing.cpython-310.pyc ADDED
Binary file (468 Bytes). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__init__.py ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ pandas._config is considered explicitly upstream of everything else in pandas,
3
+ should have no intra-pandas dependencies.
4
+
5
+ importing `dates` and `display` ensures that keys needed by _libs
6
+ are initialized.
7
+ """
8
+ __all__ = [
9
+ "config",
10
+ "detect_console_encoding",
11
+ "get_option",
12
+ "set_option",
13
+ "reset_option",
14
+ "describe_option",
15
+ "option_context",
16
+ "options",
17
+ "using_copy_on_write",
18
+ "warn_copy_on_write",
19
+ ]
20
+ from pandas._config import config
21
+ from pandas._config import dates # pyright: ignore[reportUnusedImport] # noqa: F401
22
+ from pandas._config.config import (
23
+ _global_config,
24
+ describe_option,
25
+ get_option,
26
+ option_context,
27
+ options,
28
+ reset_option,
29
+ set_option,
30
+ )
31
+ from pandas._config.display import detect_console_encoding
32
+
33
+
34
+ def using_copy_on_write() -> bool:
35
+ _mode_options = _global_config["mode"]
36
+ return (
37
+ _mode_options["copy_on_write"] is True
38
+ and _mode_options["data_manager"] == "block"
39
+ )
40
+
41
+
42
+ def warn_copy_on_write() -> bool:
43
+ _mode_options = _global_config["mode"]
44
+ return (
45
+ _mode_options["copy_on_write"] == "warn"
46
+ and _mode_options["data_manager"] == "block"
47
+ )
48
+
49
+
50
+ def using_nullable_dtypes() -> bool:
51
+ _mode_options = _global_config["mode"]
52
+ return _mode_options["nullable_dtypes"]
53
+
54
+
55
+ def using_string_dtype() -> bool:
56
+ _mode_options = _global_config["future"]
57
+ return _mode_options["infer_string"]
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__pycache__/__init__.cpython-310.pyc ADDED
Binary file (1.55 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__pycache__/config.cpython-310.pyc ADDED
Binary file (26.4 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__pycache__/dates.cpython-310.pyc ADDED
Binary file (794 Bytes). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__pycache__/display.cpython-310.pyc ADDED
Binary file (1.44 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/__pycache__/localization.cpython-310.pyc ADDED
Binary file (4.88 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/config.py ADDED
@@ -0,0 +1,948 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ The config module holds package-wide configurables and provides
3
+ a uniform API for working with them.
4
+
5
+ Overview
6
+ ========
7
+
8
+ This module supports the following requirements:
9
+ - options are referenced using keys in dot.notation, e.g. "x.y.option - z".
10
+ - keys are case-insensitive.
11
+ - functions should accept partial/regex keys, when unambiguous.
12
+ - options can be registered by modules at import time.
13
+ - options can be registered at init-time (via core.config_init)
14
+ - options have a default value, and (optionally) a description and
15
+ validation function associated with them.
16
+ - options can be deprecated, in which case referencing them
17
+ should produce a warning.
18
+ - deprecated options can optionally be rerouted to a replacement
19
+ so that accessing a deprecated option reroutes to a differently
20
+ named option.
21
+ - options can be reset to their default value.
22
+ - all option can be reset to their default value at once.
23
+ - all options in a certain sub - namespace can be reset at once.
24
+ - the user can set / get / reset or ask for the description of an option.
25
+ - a developer can register and mark an option as deprecated.
26
+ - you can register a callback to be invoked when the option value
27
+ is set or reset. Changing the stored value is considered misuse, but
28
+ is not verboten.
29
+
30
+ Implementation
31
+ ==============
32
+
33
+ - Data is stored using nested dictionaries, and should be accessed
34
+ through the provided API.
35
+
36
+ - "Registered options" and "Deprecated options" have metadata associated
37
+ with them, which are stored in auxiliary dictionaries keyed on the
38
+ fully-qualified key, e.g. "x.y.z.option".
39
+
40
+ - the config_init module is imported by the package's __init__.py file.
41
+ placing any register_option() calls there will ensure those options
42
+ are available as soon as pandas is loaded. If you use register_option
43
+ in a module, it will only be available after that module is imported,
44
+ which you should be aware of.
45
+
46
+ - `config_prefix` is a context_manager (for use with the `with` keyword)
47
+ which can save developers some typing, see the docstring.
48
+
49
+ """
50
+
51
+ from __future__ import annotations
52
+
53
+ from contextlib import (
54
+ ContextDecorator,
55
+ contextmanager,
56
+ )
57
+ import re
58
+ from typing import (
59
+ TYPE_CHECKING,
60
+ Any,
61
+ Callable,
62
+ Generic,
63
+ NamedTuple,
64
+ cast,
65
+ )
66
+ import warnings
67
+
68
+ from pandas._typing import (
69
+ F,
70
+ T,
71
+ )
72
+ from pandas.util._exceptions import find_stack_level
73
+
74
+ if TYPE_CHECKING:
75
+ from collections.abc import (
76
+ Generator,
77
+ Iterable,
78
+ )
79
+
80
+
81
+ class DeprecatedOption(NamedTuple):
82
+ key: str
83
+ msg: str | None
84
+ rkey: str | None
85
+ removal_ver: str | None
86
+
87
+
88
+ class RegisteredOption(NamedTuple):
89
+ key: str
90
+ defval: object
91
+ doc: str
92
+ validator: Callable[[object], Any] | None
93
+ cb: Callable[[str], Any] | None
94
+
95
+
96
+ # holds deprecated option metadata
97
+ _deprecated_options: dict[str, DeprecatedOption] = {}
98
+
99
+ # holds registered option metadata
100
+ _registered_options: dict[str, RegisteredOption] = {}
101
+
102
+ # holds the current values for registered options
103
+ _global_config: dict[str, Any] = {}
104
+
105
+ # keys which have a special meaning
106
+ _reserved_keys: list[str] = ["all"]
107
+
108
+
109
+ class OptionError(AttributeError, KeyError):
110
+ """
111
+ Exception raised for pandas.options.
112
+
113
+ Backwards compatible with KeyError checks.
114
+
115
+ Examples
116
+ --------
117
+ >>> pd.options.context
118
+ Traceback (most recent call last):
119
+ OptionError: No such option
120
+ """
121
+
122
+
123
+ #
124
+ # User API
125
+
126
+
127
+ def _get_single_key(pat: str, silent: bool) -> str:
128
+ keys = _select_options(pat)
129
+ if len(keys) == 0:
130
+ if not silent:
131
+ _warn_if_deprecated(pat)
132
+ raise OptionError(f"No such keys(s): {repr(pat)}")
133
+ if len(keys) > 1:
134
+ raise OptionError("Pattern matched multiple keys")
135
+ key = keys[0]
136
+
137
+ if not silent:
138
+ _warn_if_deprecated(key)
139
+
140
+ key = _translate_key(key)
141
+
142
+ return key
143
+
144
+
145
+ def _get_option(pat: str, silent: bool = False) -> Any:
146
+ key = _get_single_key(pat, silent)
147
+
148
+ # walk the nested dict
149
+ root, k = _get_root(key)
150
+ return root[k]
151
+
152
+
153
+ def _set_option(*args, **kwargs) -> None:
154
+ # must at least 1 arg deal with constraints later
155
+ nargs = len(args)
156
+ if not nargs or nargs % 2 != 0:
157
+ raise ValueError("Must provide an even number of non-keyword arguments")
158
+
159
+ # default to false
160
+ silent = kwargs.pop("silent", False)
161
+
162
+ if kwargs:
163
+ kwarg = next(iter(kwargs.keys()))
164
+ raise TypeError(f'_set_option() got an unexpected keyword argument "{kwarg}"')
165
+
166
+ for k, v in zip(args[::2], args[1::2]):
167
+ key = _get_single_key(k, silent)
168
+
169
+ o = _get_registered_option(key)
170
+ if o and o.validator:
171
+ o.validator(v)
172
+
173
+ # walk the nested dict
174
+ root, k_root = _get_root(key)
175
+ root[k_root] = v
176
+
177
+ if o.cb:
178
+ if silent:
179
+ with warnings.catch_warnings(record=True):
180
+ o.cb(key)
181
+ else:
182
+ o.cb(key)
183
+
184
+
185
+ def _describe_option(pat: str = "", _print_desc: bool = True) -> str | None:
186
+ keys = _select_options(pat)
187
+ if len(keys) == 0:
188
+ raise OptionError("No such keys(s)")
189
+
190
+ s = "\n".join([_build_option_description(k) for k in keys])
191
+
192
+ if _print_desc:
193
+ print(s)
194
+ return None
195
+ return s
196
+
197
+
198
+ def _reset_option(pat: str, silent: bool = False) -> None:
199
+ keys = _select_options(pat)
200
+
201
+ if len(keys) == 0:
202
+ raise OptionError("No such keys(s)")
203
+
204
+ if len(keys) > 1 and len(pat) < 4 and pat != "all":
205
+ raise ValueError(
206
+ "You must specify at least 4 characters when "
207
+ "resetting multiple keys, use the special keyword "
208
+ '"all" to reset all the options to their default value'
209
+ )
210
+
211
+ for k in keys:
212
+ _set_option(k, _registered_options[k].defval, silent=silent)
213
+
214
+
215
+ def get_default_val(pat: str):
216
+ key = _get_single_key(pat, silent=True)
217
+ return _get_registered_option(key).defval
218
+
219
+
220
+ class DictWrapper:
221
+ """provide attribute-style access to a nested dict"""
222
+
223
+ d: dict[str, Any]
224
+
225
+ def __init__(self, d: dict[str, Any], prefix: str = "") -> None:
226
+ object.__setattr__(self, "d", d)
227
+ object.__setattr__(self, "prefix", prefix)
228
+
229
+ def __setattr__(self, key: str, val: Any) -> None:
230
+ prefix = object.__getattribute__(self, "prefix")
231
+ if prefix:
232
+ prefix += "."
233
+ prefix += key
234
+ # you can't set new keys
235
+ # can you can't overwrite subtrees
236
+ if key in self.d and not isinstance(self.d[key], dict):
237
+ _set_option(prefix, val)
238
+ else:
239
+ raise OptionError("You can only set the value of existing options")
240
+
241
+ def __getattr__(self, key: str):
242
+ prefix = object.__getattribute__(self, "prefix")
243
+ if prefix:
244
+ prefix += "."
245
+ prefix += key
246
+ try:
247
+ v = object.__getattribute__(self, "d")[key]
248
+ except KeyError as err:
249
+ raise OptionError("No such option") from err
250
+ if isinstance(v, dict):
251
+ return DictWrapper(v, prefix)
252
+ else:
253
+ return _get_option(prefix)
254
+
255
+ def __dir__(self) -> list[str]:
256
+ return list(self.d.keys())
257
+
258
+
259
+ # For user convenience, we'd like to have the available options described
260
+ # in the docstring. For dev convenience we'd like to generate the docstrings
261
+ # dynamically instead of maintaining them by hand. To this, we use the
262
+ # class below which wraps functions inside a callable, and converts
263
+ # __doc__ into a property function. The doctsrings below are templates
264
+ # using the py2.6+ advanced formatting syntax to plug in a concise list
265
+ # of options, and option descriptions.
266
+
267
+
268
+ class CallableDynamicDoc(Generic[T]):
269
+ def __init__(self, func: Callable[..., T], doc_tmpl: str) -> None:
270
+ self.__doc_tmpl__ = doc_tmpl
271
+ self.__func__ = func
272
+
273
+ def __call__(self, *args, **kwds) -> T:
274
+ return self.__func__(*args, **kwds)
275
+
276
+ # error: Signature of "__doc__" incompatible with supertype "object"
277
+ @property
278
+ def __doc__(self) -> str: # type: ignore[override]
279
+ opts_desc = _describe_option("all", _print_desc=False)
280
+ opts_list = pp_options_list(list(_registered_options.keys()))
281
+ return self.__doc_tmpl__.format(opts_desc=opts_desc, opts_list=opts_list)
282
+
283
+
284
+ _get_option_tmpl = """
285
+ get_option(pat)
286
+
287
+ Retrieves the value of the specified option.
288
+
289
+ Available options:
290
+
291
+ {opts_list}
292
+
293
+ Parameters
294
+ ----------
295
+ pat : str
296
+ Regexp which should match a single option.
297
+ Note: partial matches are supported for convenience, but unless you use the
298
+ full option name (e.g. x.y.z.option_name), your code may break in future
299
+ versions if new options with similar names are introduced.
300
+
301
+ Returns
302
+ -------
303
+ result : the value of the option
304
+
305
+ Raises
306
+ ------
307
+ OptionError : if no such option exists
308
+
309
+ Notes
310
+ -----
311
+ Please reference the :ref:`User Guide <options>` for more information.
312
+
313
+ The available options with its descriptions:
314
+
315
+ {opts_desc}
316
+
317
+ Examples
318
+ --------
319
+ >>> pd.get_option('display.max_columns') # doctest: +SKIP
320
+ 4
321
+ """
322
+
323
+ _set_option_tmpl = """
324
+ set_option(pat, value)
325
+
326
+ Sets the value of the specified option.
327
+
328
+ Available options:
329
+
330
+ {opts_list}
331
+
332
+ Parameters
333
+ ----------
334
+ pat : str
335
+ Regexp which should match a single option.
336
+ Note: partial matches are supported for convenience, but unless you use the
337
+ full option name (e.g. x.y.z.option_name), your code may break in future
338
+ versions if new options with similar names are introduced.
339
+ value : object
340
+ New value of option.
341
+
342
+ Returns
343
+ -------
344
+ None
345
+
346
+ Raises
347
+ ------
348
+ OptionError if no such option exists
349
+
350
+ Notes
351
+ -----
352
+ Please reference the :ref:`User Guide <options>` for more information.
353
+
354
+ The available options with its descriptions:
355
+
356
+ {opts_desc}
357
+
358
+ Examples
359
+ --------
360
+ >>> pd.set_option('display.max_columns', 4)
361
+ >>> df = pd.DataFrame([[1, 2, 3, 4, 5], [6, 7, 8, 9, 10]])
362
+ >>> df
363
+ 0 1 ... 3 4
364
+ 0 1 2 ... 4 5
365
+ 1 6 7 ... 9 10
366
+ [2 rows x 5 columns]
367
+ >>> pd.reset_option('display.max_columns')
368
+ """
369
+
370
+ _describe_option_tmpl = """
371
+ describe_option(pat, _print_desc=False)
372
+
373
+ Prints the description for one or more registered options.
374
+
375
+ Call with no arguments to get a listing for all registered options.
376
+
377
+ Available options:
378
+
379
+ {opts_list}
380
+
381
+ Parameters
382
+ ----------
383
+ pat : str
384
+ Regexp pattern. All matching keys will have their description displayed.
385
+ _print_desc : bool, default True
386
+ If True (default) the description(s) will be printed to stdout.
387
+ Otherwise, the description(s) will be returned as a unicode string
388
+ (for testing).
389
+
390
+ Returns
391
+ -------
392
+ None by default, the description(s) as a unicode string if _print_desc
393
+ is False
394
+
395
+ Notes
396
+ -----
397
+ Please reference the :ref:`User Guide <options>` for more information.
398
+
399
+ The available options with its descriptions:
400
+
401
+ {opts_desc}
402
+
403
+ Examples
404
+ --------
405
+ >>> pd.describe_option('display.max_columns') # doctest: +SKIP
406
+ display.max_columns : int
407
+ If max_cols is exceeded, switch to truncate view...
408
+ """
409
+
410
+ _reset_option_tmpl = """
411
+ reset_option(pat)
412
+
413
+ Reset one or more options to their default value.
414
+
415
+ Pass "all" as argument to reset all options.
416
+
417
+ Available options:
418
+
419
+ {opts_list}
420
+
421
+ Parameters
422
+ ----------
423
+ pat : str/regex
424
+ If specified only options matching `prefix*` will be reset.
425
+ Note: partial matches are supported for convenience, but unless you
426
+ use the full option name (e.g. x.y.z.option_name), your code may break
427
+ in future versions if new options with similar names are introduced.
428
+
429
+ Returns
430
+ -------
431
+ None
432
+
433
+ Notes
434
+ -----
435
+ Please reference the :ref:`User Guide <options>` for more information.
436
+
437
+ The available options with its descriptions:
438
+
439
+ {opts_desc}
440
+
441
+ Examples
442
+ --------
443
+ >>> pd.reset_option('display.max_columns') # doctest: +SKIP
444
+ """
445
+
446
+ # bind the functions with their docstrings into a Callable
447
+ # and use that as the functions exposed in pd.api
448
+ get_option = CallableDynamicDoc(_get_option, _get_option_tmpl)
449
+ set_option = CallableDynamicDoc(_set_option, _set_option_tmpl)
450
+ reset_option = CallableDynamicDoc(_reset_option, _reset_option_tmpl)
451
+ describe_option = CallableDynamicDoc(_describe_option, _describe_option_tmpl)
452
+ options = DictWrapper(_global_config)
453
+
454
+ #
455
+ # Functions for use by pandas developers, in addition to User - api
456
+
457
+
458
+ class option_context(ContextDecorator):
459
+ """
460
+ Context manager to temporarily set options in the `with` statement context.
461
+
462
+ You need to invoke as ``option_context(pat, val, [(pat, val), ...])``.
463
+
464
+ Examples
465
+ --------
466
+ >>> from pandas import option_context
467
+ >>> with option_context('display.max_rows', 10, 'display.max_columns', 5):
468
+ ... pass
469
+ """
470
+
471
+ def __init__(self, *args) -> None:
472
+ if len(args) % 2 != 0 or len(args) < 2:
473
+ raise ValueError(
474
+ "Need to invoke as option_context(pat, val, [(pat, val), ...])."
475
+ )
476
+
477
+ self.ops = list(zip(args[::2], args[1::2]))
478
+
479
+ def __enter__(self) -> None:
480
+ self.undo = [(pat, _get_option(pat)) for pat, val in self.ops]
481
+
482
+ for pat, val in self.ops:
483
+ _set_option(pat, val, silent=True)
484
+
485
+ def __exit__(self, *args) -> None:
486
+ if self.undo:
487
+ for pat, val in self.undo:
488
+ _set_option(pat, val, silent=True)
489
+
490
+
491
+ def register_option(
492
+ key: str,
493
+ defval: object,
494
+ doc: str = "",
495
+ validator: Callable[[object], Any] | None = None,
496
+ cb: Callable[[str], Any] | None = None,
497
+ ) -> None:
498
+ """
499
+ Register an option in the package-wide pandas config object
500
+
501
+ Parameters
502
+ ----------
503
+ key : str
504
+ Fully-qualified key, e.g. "x.y.option - z".
505
+ defval : object
506
+ Default value of the option.
507
+ doc : str
508
+ Description of the option.
509
+ validator : Callable, optional
510
+ Function of a single argument, should raise `ValueError` if
511
+ called with a value which is not a legal value for the option.
512
+ cb
513
+ a function of a single argument "key", which is called
514
+ immediately after an option value is set/reset. key is
515
+ the full name of the option.
516
+
517
+ Raises
518
+ ------
519
+ ValueError if `validator` is specified and `defval` is not a valid value.
520
+
521
+ """
522
+ import keyword
523
+ import tokenize
524
+
525
+ key = key.lower()
526
+
527
+ if key in _registered_options:
528
+ raise OptionError(f"Option '{key}' has already been registered")
529
+ if key in _reserved_keys:
530
+ raise OptionError(f"Option '{key}' is a reserved key")
531
+
532
+ # the default value should be legal
533
+ if validator:
534
+ validator(defval)
535
+
536
+ # walk the nested dict, creating dicts as needed along the path
537
+ path = key.split(".")
538
+
539
+ for k in path:
540
+ if not re.match("^" + tokenize.Name + "$", k):
541
+ raise ValueError(f"{k} is not a valid identifier")
542
+ if keyword.iskeyword(k):
543
+ raise ValueError(f"{k} is a python keyword")
544
+
545
+ cursor = _global_config
546
+ msg = "Path prefix to option '{option}' is already an option"
547
+
548
+ for i, p in enumerate(path[:-1]):
549
+ if not isinstance(cursor, dict):
550
+ raise OptionError(msg.format(option=".".join(path[:i])))
551
+ if p not in cursor:
552
+ cursor[p] = {}
553
+ cursor = cursor[p]
554
+
555
+ if not isinstance(cursor, dict):
556
+ raise OptionError(msg.format(option=".".join(path[:-1])))
557
+
558
+ cursor[path[-1]] = defval # initialize
559
+
560
+ # save the option metadata
561
+ _registered_options[key] = RegisteredOption(
562
+ key=key, defval=defval, doc=doc, validator=validator, cb=cb
563
+ )
564
+
565
+
566
+ def deprecate_option(
567
+ key: str,
568
+ msg: str | None = None,
569
+ rkey: str | None = None,
570
+ removal_ver: str | None = None,
571
+ ) -> None:
572
+ """
573
+ Mark option `key` as deprecated, if code attempts to access this option,
574
+ a warning will be produced, using `msg` if given, or a default message
575
+ if not.
576
+ if `rkey` is given, any access to the key will be re-routed to `rkey`.
577
+
578
+ Neither the existence of `key` nor that if `rkey` is checked. If they
579
+ do not exist, any subsequence access will fail as usual, after the
580
+ deprecation warning is given.
581
+
582
+ Parameters
583
+ ----------
584
+ key : str
585
+ Name of the option to be deprecated.
586
+ must be a fully-qualified option name (e.g "x.y.z.rkey").
587
+ msg : str, optional
588
+ Warning message to output when the key is referenced.
589
+ if no message is given a default message will be emitted.
590
+ rkey : str, optional
591
+ Name of an option to reroute access to.
592
+ If specified, any referenced `key` will be
593
+ re-routed to `rkey` including set/get/reset.
594
+ rkey must be a fully-qualified option name (e.g "x.y.z.rkey").
595
+ used by the default message if no `msg` is specified.
596
+ removal_ver : str, optional
597
+ Specifies the version in which this option will
598
+ be removed. used by the default message if no `msg` is specified.
599
+
600
+ Raises
601
+ ------
602
+ OptionError
603
+ If the specified key has already been deprecated.
604
+ """
605
+ key = key.lower()
606
+
607
+ if key in _deprecated_options:
608
+ raise OptionError(f"Option '{key}' has already been defined as deprecated.")
609
+
610
+ _deprecated_options[key] = DeprecatedOption(key, msg, rkey, removal_ver)
611
+
612
+
613
+ #
614
+ # functions internal to the module
615
+
616
+
617
+ def _select_options(pat: str) -> list[str]:
618
+ """
619
+ returns a list of keys matching `pat`
620
+
621
+ if pat=="all", returns all registered options
622
+ """
623
+ # short-circuit for exact key
624
+ if pat in _registered_options:
625
+ return [pat]
626
+
627
+ # else look through all of them
628
+ keys = sorted(_registered_options.keys())
629
+ if pat == "all": # reserved key
630
+ return keys
631
+
632
+ return [k for k in keys if re.search(pat, k, re.I)]
633
+
634
+
635
+ def _get_root(key: str) -> tuple[dict[str, Any], str]:
636
+ path = key.split(".")
637
+ cursor = _global_config
638
+ for p in path[:-1]:
639
+ cursor = cursor[p]
640
+ return cursor, path[-1]
641
+
642
+
643
+ def _is_deprecated(key: str) -> bool:
644
+ """Returns True if the given option has been deprecated"""
645
+ key = key.lower()
646
+ return key in _deprecated_options
647
+
648
+
649
+ def _get_deprecated_option(key: str):
650
+ """
651
+ Retrieves the metadata for a deprecated option, if `key` is deprecated.
652
+
653
+ Returns
654
+ -------
655
+ DeprecatedOption (namedtuple) if key is deprecated, None otherwise
656
+ """
657
+ try:
658
+ d = _deprecated_options[key]
659
+ except KeyError:
660
+ return None
661
+ else:
662
+ return d
663
+
664
+
665
+ def _get_registered_option(key: str):
666
+ """
667
+ Retrieves the option metadata if `key` is a registered option.
668
+
669
+ Returns
670
+ -------
671
+ RegisteredOption (namedtuple) if key is deprecated, None otherwise
672
+ """
673
+ return _registered_options.get(key)
674
+
675
+
676
+ def _translate_key(key: str) -> str:
677
+ """
678
+ if key id deprecated and a replacement key defined, will return the
679
+ replacement key, otherwise returns `key` as - is
680
+ """
681
+ d = _get_deprecated_option(key)
682
+ if d:
683
+ return d.rkey or key
684
+ else:
685
+ return key
686
+
687
+
688
+ def _warn_if_deprecated(key: str) -> bool:
689
+ """
690
+ Checks if `key` is a deprecated option and if so, prints a warning.
691
+
692
+ Returns
693
+ -------
694
+ bool - True if `key` is deprecated, False otherwise.
695
+ """
696
+ d = _get_deprecated_option(key)
697
+ if d:
698
+ if d.msg:
699
+ warnings.warn(
700
+ d.msg,
701
+ FutureWarning,
702
+ stacklevel=find_stack_level(),
703
+ )
704
+ else:
705
+ msg = f"'{key}' is deprecated"
706
+ if d.removal_ver:
707
+ msg += f" and will be removed in {d.removal_ver}"
708
+ if d.rkey:
709
+ msg += f", please use '{d.rkey}' instead."
710
+ else:
711
+ msg += ", please refrain from using it."
712
+
713
+ warnings.warn(msg, FutureWarning, stacklevel=find_stack_level())
714
+ return True
715
+ return False
716
+
717
+
718
+ def _build_option_description(k: str) -> str:
719
+ """Builds a formatted description of a registered option and prints it"""
720
+ o = _get_registered_option(k)
721
+ d = _get_deprecated_option(k)
722
+
723
+ s = f"{k} "
724
+
725
+ if o.doc:
726
+ s += "\n".join(o.doc.strip().split("\n"))
727
+ else:
728
+ s += "No description available."
729
+
730
+ if o:
731
+ s += f"\n [default: {o.defval}] [currently: {_get_option(k, True)}]"
732
+
733
+ if d:
734
+ rkey = d.rkey or ""
735
+ s += "\n (Deprecated"
736
+ s += f", use `{rkey}` instead."
737
+ s += ")"
738
+
739
+ return s
740
+
741
+
742
+ def pp_options_list(keys: Iterable[str], width: int = 80, _print: bool = False):
743
+ """Builds a concise listing of available options, grouped by prefix"""
744
+ from itertools import groupby
745
+ from textwrap import wrap
746
+
747
+ def pp(name: str, ks: Iterable[str]) -> list[str]:
748
+ pfx = "- " + name + ".[" if name else ""
749
+ ls = wrap(
750
+ ", ".join(ks),
751
+ width,
752
+ initial_indent=pfx,
753
+ subsequent_indent=" ",
754
+ break_long_words=False,
755
+ )
756
+ if ls and ls[-1] and name:
757
+ ls[-1] = ls[-1] + "]"
758
+ return ls
759
+
760
+ ls: list[str] = []
761
+ singles = [x for x in sorted(keys) if x.find(".") < 0]
762
+ if singles:
763
+ ls += pp("", singles)
764
+ keys = [x for x in keys if x.find(".") >= 0]
765
+
766
+ for k, g in groupby(sorted(keys), lambda x: x[: x.rfind(".")]):
767
+ ks = [x[len(k) + 1 :] for x in list(g)]
768
+ ls += pp(k, ks)
769
+ s = "\n".join(ls)
770
+ if _print:
771
+ print(s)
772
+ else:
773
+ return s
774
+
775
+
776
+ #
777
+ # helpers
778
+
779
+
780
+ @contextmanager
781
+ def config_prefix(prefix: str) -> Generator[None, None, None]:
782
+ """
783
+ contextmanager for multiple invocations of API with a common prefix
784
+
785
+ supported API functions: (register / get / set )__option
786
+
787
+ Warning: This is not thread - safe, and won't work properly if you import
788
+ the API functions into your module using the "from x import y" construct.
789
+
790
+ Example
791
+ -------
792
+ import pandas._config.config as cf
793
+ with cf.config_prefix("display.font"):
794
+ cf.register_option("color", "red")
795
+ cf.register_option("size", " 5 pt")
796
+ cf.set_option(size, " 6 pt")
797
+ cf.get_option(size)
798
+ ...
799
+
800
+ etc'
801
+
802
+ will register options "display.font.color", "display.font.size", set the
803
+ value of "display.font.size"... and so on.
804
+ """
805
+ # Note: reset_option relies on set_option, and on key directly
806
+ # it does not fit in to this monkey-patching scheme
807
+
808
+ global register_option, get_option, set_option
809
+
810
+ def wrap(func: F) -> F:
811
+ def inner(key: str, *args, **kwds):
812
+ pkey = f"{prefix}.{key}"
813
+ return func(pkey, *args, **kwds)
814
+
815
+ return cast(F, inner)
816
+
817
+ _register_option = register_option
818
+ _get_option = get_option
819
+ _set_option = set_option
820
+ set_option = wrap(set_option)
821
+ get_option = wrap(get_option)
822
+ register_option = wrap(register_option)
823
+ try:
824
+ yield
825
+ finally:
826
+ set_option = _set_option
827
+ get_option = _get_option
828
+ register_option = _register_option
829
+
830
+
831
+ # These factories and methods are handy for use as the validator
832
+ # arg in register_option
833
+
834
+
835
+ def is_type_factory(_type: type[Any]) -> Callable[[Any], None]:
836
+ """
837
+
838
+ Parameters
839
+ ----------
840
+ `_type` - a type to be compared against (e.g. type(x) == `_type`)
841
+
842
+ Returns
843
+ -------
844
+ validator - a function of a single argument x , which raises
845
+ ValueError if type(x) is not equal to `_type`
846
+
847
+ """
848
+
849
+ def inner(x) -> None:
850
+ if type(x) != _type:
851
+ raise ValueError(f"Value must have type '{_type}'")
852
+
853
+ return inner
854
+
855
+
856
+ def is_instance_factory(_type) -> Callable[[Any], None]:
857
+ """
858
+
859
+ Parameters
860
+ ----------
861
+ `_type` - the type to be checked against
862
+
863
+ Returns
864
+ -------
865
+ validator - a function of a single argument x , which raises
866
+ ValueError if x is not an instance of `_type`
867
+
868
+ """
869
+ if isinstance(_type, (tuple, list)):
870
+ _type = tuple(_type)
871
+ type_repr = "|".join(map(str, _type))
872
+ else:
873
+ type_repr = f"'{_type}'"
874
+
875
+ def inner(x) -> None:
876
+ if not isinstance(x, _type):
877
+ raise ValueError(f"Value must be an instance of {type_repr}")
878
+
879
+ return inner
880
+
881
+
882
+ def is_one_of_factory(legal_values) -> Callable[[Any], None]:
883
+ callables = [c for c in legal_values if callable(c)]
884
+ legal_values = [c for c in legal_values if not callable(c)]
885
+
886
+ def inner(x) -> None:
887
+ if x not in legal_values:
888
+ if not any(c(x) for c in callables):
889
+ uvals = [str(lval) for lval in legal_values]
890
+ pp_values = "|".join(uvals)
891
+ msg = f"Value must be one of {pp_values}"
892
+ if len(callables):
893
+ msg += " or a callable"
894
+ raise ValueError(msg)
895
+
896
+ return inner
897
+
898
+
899
+ def is_nonnegative_int(value: object) -> None:
900
+ """
901
+ Verify that value is None or a positive int.
902
+
903
+ Parameters
904
+ ----------
905
+ value : None or int
906
+ The `value` to be checked.
907
+
908
+ Raises
909
+ ------
910
+ ValueError
911
+ When the value is not None or is a negative integer
912
+ """
913
+ if value is None:
914
+ return
915
+
916
+ elif isinstance(value, int):
917
+ if value >= 0:
918
+ return
919
+
920
+ msg = "Value must be a nonnegative integer or None"
921
+ raise ValueError(msg)
922
+
923
+
924
+ # common type validators, for convenience
925
+ # usage: register_option(... , validator = is_int)
926
+ is_int = is_type_factory(int)
927
+ is_bool = is_type_factory(bool)
928
+ is_float = is_type_factory(float)
929
+ is_str = is_type_factory(str)
930
+ is_text = is_instance_factory((str, bytes))
931
+
932
+
933
+ def is_callable(obj) -> bool:
934
+ """
935
+
936
+ Parameters
937
+ ----------
938
+ `obj` - the object to be checked
939
+
940
+ Returns
941
+ -------
942
+ validator - returns True if object is callable
943
+ raises ValueError otherwise.
944
+
945
+ """
946
+ if not callable(obj):
947
+ raise ValueError("Value must be a callable")
948
+ return True
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/dates.py ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ config for datetime formatting
3
+ """
4
+ from __future__ import annotations
5
+
6
+ from pandas._config import config as cf
7
+
8
+ pc_date_dayfirst_doc = """
9
+ : boolean
10
+ When True, prints and parses dates with the day first, eg 20/01/2005
11
+ """
12
+
13
+ pc_date_yearfirst_doc = """
14
+ : boolean
15
+ When True, prints and parses dates with the year first, eg 2005/01/20
16
+ """
17
+
18
+ with cf.config_prefix("display"):
19
+ # Needed upstream of `_libs` because these are used in tslibs.parsing
20
+ cf.register_option(
21
+ "date_dayfirst", False, pc_date_dayfirst_doc, validator=cf.is_bool
22
+ )
23
+ cf.register_option(
24
+ "date_yearfirst", False, pc_date_yearfirst_doc, validator=cf.is_bool
25
+ )
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/display.py ADDED
@@ -0,0 +1,62 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Unopinionated display configuration.
3
+ """
4
+
5
+ from __future__ import annotations
6
+
7
+ import locale
8
+ import sys
9
+
10
+ from pandas._config import config as cf
11
+
12
+ # -----------------------------------------------------------------------------
13
+ # Global formatting options
14
+ _initial_defencoding: str | None = None
15
+
16
+
17
+ def detect_console_encoding() -> str:
18
+ """
19
+ Try to find the most capable encoding supported by the console.
20
+ slightly modified from the way IPython handles the same issue.
21
+ """
22
+ global _initial_defencoding
23
+
24
+ encoding = None
25
+ try:
26
+ encoding = sys.stdout.encoding or sys.stdin.encoding
27
+ except (AttributeError, OSError):
28
+ pass
29
+
30
+ # try again for something better
31
+ if not encoding or "ascii" in encoding.lower():
32
+ try:
33
+ encoding = locale.getpreferredencoding()
34
+ except locale.Error:
35
+ # can be raised by locale.setlocale(), which is
36
+ # called by getpreferredencoding
37
+ # (on some systems, see stdlib locale docs)
38
+ pass
39
+
40
+ # when all else fails. this will usually be "ascii"
41
+ if not encoding or "ascii" in encoding.lower():
42
+ encoding = sys.getdefaultencoding()
43
+
44
+ # GH#3360, save the reported defencoding at import time
45
+ # MPL backends may change it. Make available for debugging.
46
+ if not _initial_defencoding:
47
+ _initial_defencoding = sys.getdefaultencoding()
48
+
49
+ return encoding
50
+
51
+
52
+ pc_encoding_doc = """
53
+ : str/unicode
54
+ Defaults to the detected encoding of the console.
55
+ Specifies the encoding to be used for strings returned by to_string,
56
+ these are generally strings meant to be displayed on the console.
57
+ """
58
+
59
+ with cf.config_prefix("display"):
60
+ cf.register_option(
61
+ "encoding", detect_console_encoding(), pc_encoding_doc, validator=cf.is_text
62
+ )
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_config/localization.py ADDED
@@ -0,0 +1,172 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Helpers for configuring locale settings.
3
+
4
+ Name `localization` is chosen to avoid overlap with builtin `locale` module.
5
+ """
6
+ from __future__ import annotations
7
+
8
+ from contextlib import contextmanager
9
+ import locale
10
+ import platform
11
+ import re
12
+ import subprocess
13
+ from typing import TYPE_CHECKING
14
+
15
+ from pandas._config.config import options
16
+
17
+ if TYPE_CHECKING:
18
+ from collections.abc import Generator
19
+
20
+
21
+ @contextmanager
22
+ def set_locale(
23
+ new_locale: str | tuple[str, str], lc_var: int = locale.LC_ALL
24
+ ) -> Generator[str | tuple[str, str], None, None]:
25
+ """
26
+ Context manager for temporarily setting a locale.
27
+
28
+ Parameters
29
+ ----------
30
+ new_locale : str or tuple
31
+ A string of the form <language_country>.<encoding>. For example to set
32
+ the current locale to US English with a UTF8 encoding, you would pass
33
+ "en_US.UTF-8".
34
+ lc_var : int, default `locale.LC_ALL`
35
+ The category of the locale being set.
36
+
37
+ Notes
38
+ -----
39
+ This is useful when you want to run a particular block of code under a
40
+ particular locale, without globally setting the locale. This probably isn't
41
+ thread-safe.
42
+ """
43
+ # getlocale is not always compliant with setlocale, use setlocale. GH#46595
44
+ current_locale = locale.setlocale(lc_var)
45
+
46
+ try:
47
+ locale.setlocale(lc_var, new_locale)
48
+ normalized_code, normalized_encoding = locale.getlocale()
49
+ if normalized_code is not None and normalized_encoding is not None:
50
+ yield f"{normalized_code}.{normalized_encoding}"
51
+ else:
52
+ yield new_locale
53
+ finally:
54
+ locale.setlocale(lc_var, current_locale)
55
+
56
+
57
+ def can_set_locale(lc: str, lc_var: int = locale.LC_ALL) -> bool:
58
+ """
59
+ Check to see if we can set a locale, and subsequently get the locale,
60
+ without raising an Exception.
61
+
62
+ Parameters
63
+ ----------
64
+ lc : str
65
+ The locale to attempt to set.
66
+ lc_var : int, default `locale.LC_ALL`
67
+ The category of the locale being set.
68
+
69
+ Returns
70
+ -------
71
+ bool
72
+ Whether the passed locale can be set
73
+ """
74
+ try:
75
+ with set_locale(lc, lc_var=lc_var):
76
+ pass
77
+ except (ValueError, locale.Error):
78
+ # horrible name for a Exception subclass
79
+ return False
80
+ else:
81
+ return True
82
+
83
+
84
+ def _valid_locales(locales: list[str] | str, normalize: bool) -> list[str]:
85
+ """
86
+ Return a list of normalized locales that do not throw an ``Exception``
87
+ when set.
88
+
89
+ Parameters
90
+ ----------
91
+ locales : str
92
+ A string where each locale is separated by a newline.
93
+ normalize : bool
94
+ Whether to call ``locale.normalize`` on each locale.
95
+
96
+ Returns
97
+ -------
98
+ valid_locales : list
99
+ A list of valid locales.
100
+ """
101
+ return [
102
+ loc
103
+ for loc in (
104
+ locale.normalize(loc.strip()) if normalize else loc.strip()
105
+ for loc in locales
106
+ )
107
+ if can_set_locale(loc)
108
+ ]
109
+
110
+
111
+ def get_locales(
112
+ prefix: str | None = None,
113
+ normalize: bool = True,
114
+ ) -> list[str]:
115
+ """
116
+ Get all the locales that are available on the system.
117
+
118
+ Parameters
119
+ ----------
120
+ prefix : str
121
+ If not ``None`` then return only those locales with the prefix
122
+ provided. For example to get all English language locales (those that
123
+ start with ``"en"``), pass ``prefix="en"``.
124
+ normalize : bool
125
+ Call ``locale.normalize`` on the resulting list of available locales.
126
+ If ``True``, only locales that can be set without throwing an
127
+ ``Exception`` are returned.
128
+
129
+ Returns
130
+ -------
131
+ locales : list of strings
132
+ A list of locale strings that can be set with ``locale.setlocale()``.
133
+ For example::
134
+
135
+ locale.setlocale(locale.LC_ALL, locale_string)
136
+
137
+ On error will return an empty list (no locale available, e.g. Windows)
138
+
139
+ """
140
+ if platform.system() in ("Linux", "Darwin"):
141
+ raw_locales = subprocess.check_output(["locale", "-a"])
142
+ else:
143
+ # Other platforms e.g. windows platforms don't define "locale -a"
144
+ # Note: is_platform_windows causes circular import here
145
+ return []
146
+
147
+ try:
148
+ # raw_locales is "\n" separated list of locales
149
+ # it may contain non-decodable parts, so split
150
+ # extract what we can and then rejoin.
151
+ split_raw_locales = raw_locales.split(b"\n")
152
+ out_locales = []
153
+ for x in split_raw_locales:
154
+ try:
155
+ out_locales.append(str(x, encoding=options.display.encoding))
156
+ except UnicodeError:
157
+ # 'locale -a' is used to populated 'raw_locales' and on
158
+ # Redhat 7 Linux (and maybe others) prints locale names
159
+ # using windows-1252 encoding. Bug only triggered by
160
+ # a few special characters and when there is an
161
+ # extensive list of installed locales.
162
+ out_locales.append(str(x, encoding="windows-1252"))
163
+
164
+ except TypeError:
165
+ pass
166
+
167
+ if prefix is None:
168
+ return _valid_locales(out_locales, normalize)
169
+
170
+ pattern = re.compile(f"{prefix}.*")
171
+ found = pattern.findall("\n".join(out_locales))
172
+ return _valid_locales(found, normalize)
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/__init__.py ADDED
@@ -0,0 +1,635 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ from decimal import Decimal
4
+ import operator
5
+ import os
6
+ from sys import byteorder
7
+ from typing import (
8
+ TYPE_CHECKING,
9
+ Callable,
10
+ ContextManager,
11
+ )
12
+ import warnings
13
+
14
+ import numpy as np
15
+
16
+ from pandas._config import using_string_dtype
17
+ from pandas._config.localization import (
18
+ can_set_locale,
19
+ get_locales,
20
+ set_locale,
21
+ )
22
+
23
+ from pandas.compat import pa_version_under10p1
24
+
25
+ import pandas as pd
26
+ from pandas import (
27
+ ArrowDtype,
28
+ DataFrame,
29
+ Index,
30
+ MultiIndex,
31
+ RangeIndex,
32
+ Series,
33
+ )
34
+ from pandas._testing._io import (
35
+ round_trip_localpath,
36
+ round_trip_pathlib,
37
+ round_trip_pickle,
38
+ write_to_compressed,
39
+ )
40
+ from pandas._testing._warnings import (
41
+ assert_produces_warning,
42
+ maybe_produces_warning,
43
+ )
44
+ from pandas._testing.asserters import (
45
+ assert_almost_equal,
46
+ assert_attr_equal,
47
+ assert_categorical_equal,
48
+ assert_class_equal,
49
+ assert_contains_all,
50
+ assert_copy,
51
+ assert_datetime_array_equal,
52
+ assert_dict_equal,
53
+ assert_equal,
54
+ assert_extension_array_equal,
55
+ assert_frame_equal,
56
+ assert_index_equal,
57
+ assert_indexing_slices_equivalent,
58
+ assert_interval_array_equal,
59
+ assert_is_sorted,
60
+ assert_is_valid_plot_return_object,
61
+ assert_metadata_equivalent,
62
+ assert_numpy_array_equal,
63
+ assert_period_array_equal,
64
+ assert_series_equal,
65
+ assert_sp_array_equal,
66
+ assert_timedelta_array_equal,
67
+ raise_assert_detail,
68
+ )
69
+ from pandas._testing.compat import (
70
+ get_dtype,
71
+ get_obj,
72
+ )
73
+ from pandas._testing.contexts import (
74
+ assert_cow_warning,
75
+ decompress_file,
76
+ ensure_clean,
77
+ raises_chained_assignment_error,
78
+ set_timezone,
79
+ use_numexpr,
80
+ with_csv_dialect,
81
+ )
82
+ from pandas.core.arrays import (
83
+ ArrowExtensionArray,
84
+ BaseMaskedArray,
85
+ NumpyExtensionArray,
86
+ )
87
+ from pandas.core.arrays._mixins import NDArrayBackedExtensionArray
88
+ from pandas.core.construction import extract_array
89
+
90
+ if TYPE_CHECKING:
91
+ from pandas._typing import (
92
+ Dtype,
93
+ NpDtype,
94
+ )
95
+
96
+
97
+ UNSIGNED_INT_NUMPY_DTYPES: list[NpDtype] = ["uint8", "uint16", "uint32", "uint64"]
98
+ UNSIGNED_INT_EA_DTYPES: list[Dtype] = ["UInt8", "UInt16", "UInt32", "UInt64"]
99
+ SIGNED_INT_NUMPY_DTYPES: list[NpDtype] = [int, "int8", "int16", "int32", "int64"]
100
+ SIGNED_INT_EA_DTYPES: list[Dtype] = ["Int8", "Int16", "Int32", "Int64"]
101
+ ALL_INT_NUMPY_DTYPES = UNSIGNED_INT_NUMPY_DTYPES + SIGNED_INT_NUMPY_DTYPES
102
+ ALL_INT_EA_DTYPES = UNSIGNED_INT_EA_DTYPES + SIGNED_INT_EA_DTYPES
103
+ ALL_INT_DTYPES: list[Dtype] = [*ALL_INT_NUMPY_DTYPES, *ALL_INT_EA_DTYPES]
104
+
105
+ FLOAT_NUMPY_DTYPES: list[NpDtype] = [float, "float32", "float64"]
106
+ FLOAT_EA_DTYPES: list[Dtype] = ["Float32", "Float64"]
107
+ ALL_FLOAT_DTYPES: list[Dtype] = [*FLOAT_NUMPY_DTYPES, *FLOAT_EA_DTYPES]
108
+
109
+ COMPLEX_DTYPES: list[Dtype] = [complex, "complex64", "complex128"]
110
+ if using_string_dtype():
111
+ STRING_DTYPES: list[Dtype] = ["U"]
112
+ else:
113
+ STRING_DTYPES: list[Dtype] = [str, "str", "U"] # type: ignore[no-redef]
114
+ COMPLEX_FLOAT_DTYPES: list[Dtype] = [*COMPLEX_DTYPES, *FLOAT_NUMPY_DTYPES]
115
+
116
+ DATETIME64_DTYPES: list[Dtype] = ["datetime64[ns]", "M8[ns]"]
117
+ TIMEDELTA64_DTYPES: list[Dtype] = ["timedelta64[ns]", "m8[ns]"]
118
+
119
+ BOOL_DTYPES: list[Dtype] = [bool, "bool"]
120
+ BYTES_DTYPES: list[Dtype] = [bytes, "bytes"]
121
+ OBJECT_DTYPES: list[Dtype] = [object, "object"]
122
+
123
+ ALL_REAL_NUMPY_DTYPES = FLOAT_NUMPY_DTYPES + ALL_INT_NUMPY_DTYPES
124
+ ALL_REAL_EXTENSION_DTYPES = FLOAT_EA_DTYPES + ALL_INT_EA_DTYPES
125
+ ALL_REAL_DTYPES: list[Dtype] = [*ALL_REAL_NUMPY_DTYPES, *ALL_REAL_EXTENSION_DTYPES]
126
+ ALL_NUMERIC_DTYPES: list[Dtype] = [*ALL_REAL_DTYPES, *COMPLEX_DTYPES]
127
+
128
+ ALL_NUMPY_DTYPES = (
129
+ ALL_REAL_NUMPY_DTYPES
130
+ + COMPLEX_DTYPES
131
+ + STRING_DTYPES
132
+ + DATETIME64_DTYPES
133
+ + TIMEDELTA64_DTYPES
134
+ + BOOL_DTYPES
135
+ + OBJECT_DTYPES
136
+ + BYTES_DTYPES
137
+ )
138
+
139
+ NARROW_NP_DTYPES = [
140
+ np.float16,
141
+ np.float32,
142
+ np.int8,
143
+ np.int16,
144
+ np.int32,
145
+ np.uint8,
146
+ np.uint16,
147
+ np.uint32,
148
+ ]
149
+
150
+ PYTHON_DATA_TYPES = [
151
+ str,
152
+ int,
153
+ float,
154
+ complex,
155
+ list,
156
+ tuple,
157
+ range,
158
+ dict,
159
+ set,
160
+ frozenset,
161
+ bool,
162
+ bytes,
163
+ bytearray,
164
+ memoryview,
165
+ ]
166
+
167
+ ENDIAN = {"little": "<", "big": ">"}[byteorder]
168
+
169
+ NULL_OBJECTS = [None, np.nan, pd.NaT, float("nan"), pd.NA, Decimal("NaN")]
170
+ NP_NAT_OBJECTS = [
171
+ cls("NaT", unit)
172
+ for cls in [np.datetime64, np.timedelta64]
173
+ for unit in [
174
+ "Y",
175
+ "M",
176
+ "W",
177
+ "D",
178
+ "h",
179
+ "m",
180
+ "s",
181
+ "ms",
182
+ "us",
183
+ "ns",
184
+ "ps",
185
+ "fs",
186
+ "as",
187
+ ]
188
+ ]
189
+
190
+ if not pa_version_under10p1:
191
+ import pyarrow as pa
192
+
193
+ UNSIGNED_INT_PYARROW_DTYPES = [pa.uint8(), pa.uint16(), pa.uint32(), pa.uint64()]
194
+ SIGNED_INT_PYARROW_DTYPES = [pa.int8(), pa.int16(), pa.int32(), pa.int64()]
195
+ ALL_INT_PYARROW_DTYPES = UNSIGNED_INT_PYARROW_DTYPES + SIGNED_INT_PYARROW_DTYPES
196
+ ALL_INT_PYARROW_DTYPES_STR_REPR = [
197
+ str(ArrowDtype(typ)) for typ in ALL_INT_PYARROW_DTYPES
198
+ ]
199
+
200
+ # pa.float16 doesn't seem supported
201
+ # https://github.com/apache/arrow/blob/master/python/pyarrow/src/arrow/python/helpers.cc#L86
202
+ FLOAT_PYARROW_DTYPES = [pa.float32(), pa.float64()]
203
+ FLOAT_PYARROW_DTYPES_STR_REPR = [
204
+ str(ArrowDtype(typ)) for typ in FLOAT_PYARROW_DTYPES
205
+ ]
206
+ DECIMAL_PYARROW_DTYPES = [pa.decimal128(7, 3)]
207
+ STRING_PYARROW_DTYPES = [pa.string()]
208
+ BINARY_PYARROW_DTYPES = [pa.binary()]
209
+
210
+ TIME_PYARROW_DTYPES = [
211
+ pa.time32("s"),
212
+ pa.time32("ms"),
213
+ pa.time64("us"),
214
+ pa.time64("ns"),
215
+ ]
216
+ DATE_PYARROW_DTYPES = [pa.date32(), pa.date64()]
217
+ DATETIME_PYARROW_DTYPES = [
218
+ pa.timestamp(unit=unit, tz=tz)
219
+ for unit in ["s", "ms", "us", "ns"]
220
+ for tz in [None, "UTC", "US/Pacific", "US/Eastern"]
221
+ ]
222
+ TIMEDELTA_PYARROW_DTYPES = [pa.duration(unit) for unit in ["s", "ms", "us", "ns"]]
223
+
224
+ BOOL_PYARROW_DTYPES = [pa.bool_()]
225
+
226
+ # TODO: Add container like pyarrow types:
227
+ # https://arrow.apache.org/docs/python/api/datatypes.html#factory-functions
228
+ ALL_PYARROW_DTYPES = (
229
+ ALL_INT_PYARROW_DTYPES
230
+ + FLOAT_PYARROW_DTYPES
231
+ + DECIMAL_PYARROW_DTYPES
232
+ + STRING_PYARROW_DTYPES
233
+ + BINARY_PYARROW_DTYPES
234
+ + TIME_PYARROW_DTYPES
235
+ + DATE_PYARROW_DTYPES
236
+ + DATETIME_PYARROW_DTYPES
237
+ + TIMEDELTA_PYARROW_DTYPES
238
+ + BOOL_PYARROW_DTYPES
239
+ )
240
+ ALL_REAL_PYARROW_DTYPES_STR_REPR = (
241
+ ALL_INT_PYARROW_DTYPES_STR_REPR + FLOAT_PYARROW_DTYPES_STR_REPR
242
+ )
243
+ else:
244
+ FLOAT_PYARROW_DTYPES_STR_REPR = []
245
+ ALL_INT_PYARROW_DTYPES_STR_REPR = []
246
+ ALL_PYARROW_DTYPES = []
247
+ ALL_REAL_PYARROW_DTYPES_STR_REPR = []
248
+
249
+ ALL_REAL_NULLABLE_DTYPES = (
250
+ FLOAT_NUMPY_DTYPES + ALL_REAL_EXTENSION_DTYPES + ALL_REAL_PYARROW_DTYPES_STR_REPR
251
+ )
252
+
253
+ arithmetic_dunder_methods = [
254
+ "__add__",
255
+ "__radd__",
256
+ "__sub__",
257
+ "__rsub__",
258
+ "__mul__",
259
+ "__rmul__",
260
+ "__floordiv__",
261
+ "__rfloordiv__",
262
+ "__truediv__",
263
+ "__rtruediv__",
264
+ "__pow__",
265
+ "__rpow__",
266
+ "__mod__",
267
+ "__rmod__",
268
+ ]
269
+
270
+ comparison_dunder_methods = ["__eq__", "__ne__", "__le__", "__lt__", "__ge__", "__gt__"]
271
+
272
+
273
+ # -----------------------------------------------------------------------------
274
+ # Comparators
275
+
276
+
277
+ def box_expected(expected, box_cls, transpose: bool = True):
278
+ """
279
+ Helper function to wrap the expected output of a test in a given box_class.
280
+
281
+ Parameters
282
+ ----------
283
+ expected : np.ndarray, Index, Series
284
+ box_cls : {Index, Series, DataFrame}
285
+
286
+ Returns
287
+ -------
288
+ subclass of box_cls
289
+ """
290
+ if box_cls is pd.array:
291
+ if isinstance(expected, RangeIndex):
292
+ # pd.array would return an IntegerArray
293
+ expected = NumpyExtensionArray(np.asarray(expected._values))
294
+ else:
295
+ expected = pd.array(expected, copy=False)
296
+ elif box_cls is Index:
297
+ with warnings.catch_warnings():
298
+ warnings.filterwarnings("ignore", "Dtype inference", category=FutureWarning)
299
+ expected = Index(expected)
300
+ elif box_cls is Series:
301
+ with warnings.catch_warnings():
302
+ warnings.filterwarnings("ignore", "Dtype inference", category=FutureWarning)
303
+ expected = Series(expected)
304
+ elif box_cls is DataFrame:
305
+ with warnings.catch_warnings():
306
+ warnings.filterwarnings("ignore", "Dtype inference", category=FutureWarning)
307
+ expected = Series(expected).to_frame()
308
+ if transpose:
309
+ # for vector operations, we need a DataFrame to be a single-row,
310
+ # not a single-column, in order to operate against non-DataFrame
311
+ # vectors of the same length. But convert to two rows to avoid
312
+ # single-row special cases in datetime arithmetic
313
+ expected = expected.T
314
+ expected = pd.concat([expected] * 2, ignore_index=True)
315
+ elif box_cls is np.ndarray or box_cls is np.array:
316
+ expected = np.array(expected)
317
+ elif box_cls is to_array:
318
+ expected = to_array(expected)
319
+ else:
320
+ raise NotImplementedError(box_cls)
321
+ return expected
322
+
323
+
324
+ def to_array(obj):
325
+ """
326
+ Similar to pd.array, but does not cast numpy dtypes to nullable dtypes.
327
+ """
328
+ # temporary implementation until we get pd.array in place
329
+ dtype = getattr(obj, "dtype", None)
330
+
331
+ if dtype is None:
332
+ return np.asarray(obj)
333
+
334
+ return extract_array(obj, extract_numpy=True)
335
+
336
+
337
+ class SubclassedSeries(Series):
338
+ _metadata = ["testattr", "name"]
339
+
340
+ @property
341
+ def _constructor(self):
342
+ # For testing, those properties return a generic callable, and not
343
+ # the actual class. In this case that is equivalent, but it is to
344
+ # ensure we don't rely on the property returning a class
345
+ # See https://github.com/pandas-dev/pandas/pull/46018 and
346
+ # https://github.com/pandas-dev/pandas/issues/32638 and linked issues
347
+ return lambda *args, **kwargs: SubclassedSeries(*args, **kwargs)
348
+
349
+ @property
350
+ def _constructor_expanddim(self):
351
+ return lambda *args, **kwargs: SubclassedDataFrame(*args, **kwargs)
352
+
353
+
354
+ class SubclassedDataFrame(DataFrame):
355
+ _metadata = ["testattr"]
356
+
357
+ @property
358
+ def _constructor(self):
359
+ return lambda *args, **kwargs: SubclassedDataFrame(*args, **kwargs)
360
+
361
+ @property
362
+ def _constructor_sliced(self):
363
+ return lambda *args, **kwargs: SubclassedSeries(*args, **kwargs)
364
+
365
+
366
+ def convert_rows_list_to_csv_str(rows_list: list[str]) -> str:
367
+ """
368
+ Convert list of CSV rows to single CSV-formatted string for current OS.
369
+
370
+ This method is used for creating expected value of to_csv() method.
371
+
372
+ Parameters
373
+ ----------
374
+ rows_list : List[str]
375
+ Each element represents the row of csv.
376
+
377
+ Returns
378
+ -------
379
+ str
380
+ Expected output of to_csv() in current OS.
381
+ """
382
+ sep = os.linesep
383
+ return sep.join(rows_list) + sep
384
+
385
+
386
+ def external_error_raised(expected_exception: type[Exception]) -> ContextManager:
387
+ """
388
+ Helper function to mark pytest.raises that have an external error message.
389
+
390
+ Parameters
391
+ ----------
392
+ expected_exception : Exception
393
+ Expected error to raise.
394
+
395
+ Returns
396
+ -------
397
+ Callable
398
+ Regular `pytest.raises` function with `match` equal to `None`.
399
+ """
400
+ import pytest
401
+
402
+ return pytest.raises(expected_exception, match=None)
403
+
404
+
405
+ cython_table = pd.core.common._cython_table.items()
406
+
407
+
408
+ def get_cython_table_params(ndframe, func_names_and_expected):
409
+ """
410
+ Combine frame, functions from com._cython_table
411
+ keys and expected result.
412
+
413
+ Parameters
414
+ ----------
415
+ ndframe : DataFrame or Series
416
+ func_names_and_expected : Sequence of two items
417
+ The first item is a name of a NDFrame method ('sum', 'prod') etc.
418
+ The second item is the expected return value.
419
+
420
+ Returns
421
+ -------
422
+ list
423
+ List of three items (DataFrame, function, expected result)
424
+ """
425
+ results = []
426
+ for func_name, expected in func_names_and_expected:
427
+ results.append((ndframe, func_name, expected))
428
+ results += [
429
+ (ndframe, func, expected)
430
+ for func, name in cython_table
431
+ if name == func_name
432
+ ]
433
+ return results
434
+
435
+
436
+ def get_op_from_name(op_name: str) -> Callable:
437
+ """
438
+ The operator function for a given op name.
439
+
440
+ Parameters
441
+ ----------
442
+ op_name : str
443
+ The op name, in form of "add" or "__add__".
444
+
445
+ Returns
446
+ -------
447
+ function
448
+ A function performing the operation.
449
+ """
450
+ short_opname = op_name.strip("_")
451
+ try:
452
+ op = getattr(operator, short_opname)
453
+ except AttributeError:
454
+ # Assume it is the reverse operator
455
+ rop = getattr(operator, short_opname[1:])
456
+ op = lambda x, y: rop(y, x)
457
+
458
+ return op
459
+
460
+
461
+ # -----------------------------------------------------------------------------
462
+ # Indexing test helpers
463
+
464
+
465
+ def getitem(x):
466
+ return x
467
+
468
+
469
+ def setitem(x):
470
+ return x
471
+
472
+
473
+ def loc(x):
474
+ return x.loc
475
+
476
+
477
+ def iloc(x):
478
+ return x.iloc
479
+
480
+
481
+ def at(x):
482
+ return x.at
483
+
484
+
485
+ def iat(x):
486
+ return x.iat
487
+
488
+
489
+ # -----------------------------------------------------------------------------
490
+
491
+ _UNITS = ["s", "ms", "us", "ns"]
492
+
493
+
494
+ def get_finest_unit(left: str, right: str):
495
+ """
496
+ Find the higher of two datetime64 units.
497
+ """
498
+ if _UNITS.index(left) >= _UNITS.index(right):
499
+ return left
500
+ return right
501
+
502
+
503
+ def shares_memory(left, right) -> bool:
504
+ """
505
+ Pandas-compat for np.shares_memory.
506
+ """
507
+ if isinstance(left, np.ndarray) and isinstance(right, np.ndarray):
508
+ return np.shares_memory(left, right)
509
+ elif isinstance(left, np.ndarray):
510
+ # Call with reversed args to get to unpacking logic below.
511
+ return shares_memory(right, left)
512
+
513
+ if isinstance(left, RangeIndex):
514
+ return False
515
+ if isinstance(left, MultiIndex):
516
+ return shares_memory(left._codes, right)
517
+ if isinstance(left, (Index, Series)):
518
+ if isinstance(right, (Index, Series)):
519
+ return shares_memory(left._values, right._values)
520
+ return shares_memory(left._values, right)
521
+
522
+ if isinstance(left, NDArrayBackedExtensionArray):
523
+ return shares_memory(left._ndarray, right)
524
+ if isinstance(left, pd.core.arrays.SparseArray):
525
+ return shares_memory(left.sp_values, right)
526
+ if isinstance(left, pd.core.arrays.IntervalArray):
527
+ return shares_memory(left._left, right) or shares_memory(left._right, right)
528
+
529
+ if isinstance(left, ArrowExtensionArray):
530
+ if isinstance(right, ArrowExtensionArray):
531
+ # https://github.com/pandas-dev/pandas/pull/43930#discussion_r736862669
532
+ left_pa_data = left._pa_array
533
+ right_pa_data = right._pa_array
534
+ left_buf1 = left_pa_data.chunk(0).buffers()[1]
535
+ right_buf1 = right_pa_data.chunk(0).buffers()[1]
536
+ return left_buf1.address == right_buf1.address
537
+ else:
538
+ # if we have one one ArrowExtensionArray and one other array, assume
539
+ # they can only share memory if they share the same numpy buffer
540
+ return np.shares_memory(left, right)
541
+
542
+ if isinstance(left, BaseMaskedArray) and isinstance(right, BaseMaskedArray):
543
+ # By convention, we'll say these share memory if they share *either*
544
+ # the _data or the _mask
545
+ return np.shares_memory(left._data, right._data) or np.shares_memory(
546
+ left._mask, right._mask
547
+ )
548
+
549
+ if isinstance(left, DataFrame) and len(left._mgr.arrays) == 1:
550
+ arr = left._mgr.arrays[0]
551
+ return shares_memory(arr, right)
552
+
553
+ raise NotImplementedError(type(left), type(right))
554
+
555
+
556
+ __all__ = [
557
+ "ALL_INT_EA_DTYPES",
558
+ "ALL_INT_NUMPY_DTYPES",
559
+ "ALL_NUMPY_DTYPES",
560
+ "ALL_REAL_NUMPY_DTYPES",
561
+ "assert_almost_equal",
562
+ "assert_attr_equal",
563
+ "assert_categorical_equal",
564
+ "assert_class_equal",
565
+ "assert_contains_all",
566
+ "assert_copy",
567
+ "assert_datetime_array_equal",
568
+ "assert_dict_equal",
569
+ "assert_equal",
570
+ "assert_extension_array_equal",
571
+ "assert_frame_equal",
572
+ "assert_index_equal",
573
+ "assert_indexing_slices_equivalent",
574
+ "assert_interval_array_equal",
575
+ "assert_is_sorted",
576
+ "assert_is_valid_plot_return_object",
577
+ "assert_metadata_equivalent",
578
+ "assert_numpy_array_equal",
579
+ "assert_period_array_equal",
580
+ "assert_produces_warning",
581
+ "assert_series_equal",
582
+ "assert_sp_array_equal",
583
+ "assert_timedelta_array_equal",
584
+ "assert_cow_warning",
585
+ "at",
586
+ "BOOL_DTYPES",
587
+ "box_expected",
588
+ "BYTES_DTYPES",
589
+ "can_set_locale",
590
+ "COMPLEX_DTYPES",
591
+ "convert_rows_list_to_csv_str",
592
+ "DATETIME64_DTYPES",
593
+ "decompress_file",
594
+ "ENDIAN",
595
+ "ensure_clean",
596
+ "external_error_raised",
597
+ "FLOAT_EA_DTYPES",
598
+ "FLOAT_NUMPY_DTYPES",
599
+ "get_cython_table_params",
600
+ "get_dtype",
601
+ "getitem",
602
+ "get_locales",
603
+ "get_finest_unit",
604
+ "get_obj",
605
+ "get_op_from_name",
606
+ "iat",
607
+ "iloc",
608
+ "loc",
609
+ "maybe_produces_warning",
610
+ "NARROW_NP_DTYPES",
611
+ "NP_NAT_OBJECTS",
612
+ "NULL_OBJECTS",
613
+ "OBJECT_DTYPES",
614
+ "raise_assert_detail",
615
+ "raises_chained_assignment_error",
616
+ "round_trip_localpath",
617
+ "round_trip_pathlib",
618
+ "round_trip_pickle",
619
+ "setitem",
620
+ "set_locale",
621
+ "set_timezone",
622
+ "shares_memory",
623
+ "SIGNED_INT_EA_DTYPES",
624
+ "SIGNED_INT_NUMPY_DTYPES",
625
+ "STRING_DTYPES",
626
+ "SubclassedDataFrame",
627
+ "SubclassedSeries",
628
+ "TIMEDELTA64_DTYPES",
629
+ "to_array",
630
+ "UNSIGNED_INT_EA_DTYPES",
631
+ "UNSIGNED_INT_NUMPY_DTYPES",
632
+ "use_numexpr",
633
+ "with_csv_dialect",
634
+ "write_to_compressed",
635
+ ]
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Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/_hypothesis.py ADDED
@@ -0,0 +1,93 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Hypothesis data generator helpers.
3
+ """
4
+ from datetime import datetime
5
+
6
+ from hypothesis import strategies as st
7
+ from hypothesis.extra.dateutil import timezones as dateutil_timezones
8
+ from hypothesis.extra.pytz import timezones as pytz_timezones
9
+
10
+ from pandas.compat import is_platform_windows
11
+
12
+ import pandas as pd
13
+
14
+ from pandas.tseries.offsets import (
15
+ BMonthBegin,
16
+ BMonthEnd,
17
+ BQuarterBegin,
18
+ BQuarterEnd,
19
+ BYearBegin,
20
+ BYearEnd,
21
+ MonthBegin,
22
+ MonthEnd,
23
+ QuarterBegin,
24
+ QuarterEnd,
25
+ YearBegin,
26
+ YearEnd,
27
+ )
28
+
29
+ OPTIONAL_INTS = st.lists(st.one_of(st.integers(), st.none()), max_size=10, min_size=3)
30
+
31
+ OPTIONAL_FLOATS = st.lists(st.one_of(st.floats(), st.none()), max_size=10, min_size=3)
32
+
33
+ OPTIONAL_TEXT = st.lists(st.one_of(st.none(), st.text()), max_size=10, min_size=3)
34
+
35
+ OPTIONAL_DICTS = st.lists(
36
+ st.one_of(st.none(), st.dictionaries(st.text(), st.integers())),
37
+ max_size=10,
38
+ min_size=3,
39
+ )
40
+
41
+ OPTIONAL_LISTS = st.lists(
42
+ st.one_of(st.none(), st.lists(st.text(), max_size=10, min_size=3)),
43
+ max_size=10,
44
+ min_size=3,
45
+ )
46
+
47
+ OPTIONAL_ONE_OF_ALL = st.one_of(
48
+ OPTIONAL_DICTS, OPTIONAL_FLOATS, OPTIONAL_INTS, OPTIONAL_LISTS, OPTIONAL_TEXT
49
+ )
50
+
51
+ if is_platform_windows():
52
+ DATETIME_NO_TZ = st.datetimes(min_value=datetime(1900, 1, 1))
53
+ else:
54
+ DATETIME_NO_TZ = st.datetimes()
55
+
56
+ DATETIME_JAN_1_1900_OPTIONAL_TZ = st.datetimes(
57
+ min_value=pd.Timestamp(
58
+ 1900, 1, 1
59
+ ).to_pydatetime(), # pyright: ignore[reportGeneralTypeIssues]
60
+ max_value=pd.Timestamp(
61
+ 1900, 1, 1
62
+ ).to_pydatetime(), # pyright: ignore[reportGeneralTypeIssues]
63
+ timezones=st.one_of(st.none(), dateutil_timezones(), pytz_timezones()),
64
+ )
65
+
66
+ DATETIME_IN_PD_TIMESTAMP_RANGE_NO_TZ = st.datetimes(
67
+ min_value=pd.Timestamp.min.to_pydatetime(warn=False),
68
+ max_value=pd.Timestamp.max.to_pydatetime(warn=False),
69
+ )
70
+
71
+ INT_NEG_999_TO_POS_999 = st.integers(-999, 999)
72
+
73
+ # The strategy for each type is registered in conftest.py, as they don't carry
74
+ # enough runtime information (e.g. type hints) to infer how to build them.
75
+ YQM_OFFSET = st.one_of(
76
+ *map(
77
+ st.from_type,
78
+ [
79
+ MonthBegin,
80
+ MonthEnd,
81
+ BMonthBegin,
82
+ BMonthEnd,
83
+ QuarterBegin,
84
+ QuarterEnd,
85
+ BQuarterBegin,
86
+ BQuarterEnd,
87
+ YearBegin,
88
+ YearEnd,
89
+ BYearBegin,
90
+ BYearEnd,
91
+ ],
92
+ )
93
+ )
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/_io.py ADDED
@@ -0,0 +1,170 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ import gzip
4
+ import io
5
+ import pathlib
6
+ import tarfile
7
+ from typing import (
8
+ TYPE_CHECKING,
9
+ Any,
10
+ Callable,
11
+ )
12
+ import uuid
13
+ import zipfile
14
+
15
+ from pandas.compat import (
16
+ get_bz2_file,
17
+ get_lzma_file,
18
+ )
19
+ from pandas.compat._optional import import_optional_dependency
20
+
21
+ import pandas as pd
22
+ from pandas._testing.contexts import ensure_clean
23
+
24
+ if TYPE_CHECKING:
25
+ from pandas._typing import (
26
+ FilePath,
27
+ ReadPickleBuffer,
28
+ )
29
+
30
+ from pandas import (
31
+ DataFrame,
32
+ Series,
33
+ )
34
+
35
+ # ------------------------------------------------------------------
36
+ # File-IO
37
+
38
+
39
+ def round_trip_pickle(
40
+ obj: Any, path: FilePath | ReadPickleBuffer | None = None
41
+ ) -> DataFrame | Series:
42
+ """
43
+ Pickle an object and then read it again.
44
+
45
+ Parameters
46
+ ----------
47
+ obj : any object
48
+ The object to pickle and then re-read.
49
+ path : str, path object or file-like object, default None
50
+ The path where the pickled object is written and then read.
51
+
52
+ Returns
53
+ -------
54
+ pandas object
55
+ The original object that was pickled and then re-read.
56
+ """
57
+ _path = path
58
+ if _path is None:
59
+ _path = f"__{uuid.uuid4()}__.pickle"
60
+ with ensure_clean(_path) as temp_path:
61
+ pd.to_pickle(obj, temp_path)
62
+ return pd.read_pickle(temp_path)
63
+
64
+
65
+ def round_trip_pathlib(writer, reader, path: str | None = None):
66
+ """
67
+ Write an object to file specified by a pathlib.Path and read it back
68
+
69
+ Parameters
70
+ ----------
71
+ writer : callable bound to pandas object
72
+ IO writing function (e.g. DataFrame.to_csv )
73
+ reader : callable
74
+ IO reading function (e.g. pd.read_csv )
75
+ path : str, default None
76
+ The path where the object is written and then read.
77
+
78
+ Returns
79
+ -------
80
+ pandas object
81
+ The original object that was serialized and then re-read.
82
+ """
83
+ Path = pathlib.Path
84
+ if path is None:
85
+ path = "___pathlib___"
86
+ with ensure_clean(path) as path:
87
+ writer(Path(path)) # type: ignore[arg-type]
88
+ obj = reader(Path(path)) # type: ignore[arg-type]
89
+ return obj
90
+
91
+
92
+ def round_trip_localpath(writer, reader, path: str | None = None):
93
+ """
94
+ Write an object to file specified by a py.path LocalPath and read it back.
95
+
96
+ Parameters
97
+ ----------
98
+ writer : callable bound to pandas object
99
+ IO writing function (e.g. DataFrame.to_csv )
100
+ reader : callable
101
+ IO reading function (e.g. pd.read_csv )
102
+ path : str, default None
103
+ The path where the object is written and then read.
104
+
105
+ Returns
106
+ -------
107
+ pandas object
108
+ The original object that was serialized and then re-read.
109
+ """
110
+ import pytest
111
+
112
+ LocalPath = pytest.importorskip("py.path").local
113
+ if path is None:
114
+ path = "___localpath___"
115
+ with ensure_clean(path) as path:
116
+ writer(LocalPath(path))
117
+ obj = reader(LocalPath(path))
118
+ return obj
119
+
120
+
121
+ def write_to_compressed(compression, path, data, dest: str = "test") -> None:
122
+ """
123
+ Write data to a compressed file.
124
+
125
+ Parameters
126
+ ----------
127
+ compression : {'gzip', 'bz2', 'zip', 'xz', 'zstd'}
128
+ The compression type to use.
129
+ path : str
130
+ The file path to write the data.
131
+ data : str
132
+ The data to write.
133
+ dest : str, default "test"
134
+ The destination file (for ZIP only)
135
+
136
+ Raises
137
+ ------
138
+ ValueError : An invalid compression value was passed in.
139
+ """
140
+ args: tuple[Any, ...] = (data,)
141
+ mode = "wb"
142
+ method = "write"
143
+ compress_method: Callable
144
+
145
+ if compression == "zip":
146
+ compress_method = zipfile.ZipFile
147
+ mode = "w"
148
+ args = (dest, data)
149
+ method = "writestr"
150
+ elif compression == "tar":
151
+ compress_method = tarfile.TarFile
152
+ mode = "w"
153
+ file = tarfile.TarInfo(name=dest)
154
+ bytes = io.BytesIO(data)
155
+ file.size = len(data)
156
+ args = (file, bytes)
157
+ method = "addfile"
158
+ elif compression == "gzip":
159
+ compress_method = gzip.GzipFile
160
+ elif compression == "bz2":
161
+ compress_method = get_bz2_file()
162
+ elif compression == "zstd":
163
+ compress_method = import_optional_dependency("zstandard").open
164
+ elif compression == "xz":
165
+ compress_method = get_lzma_file()
166
+ else:
167
+ raise ValueError(f"Unrecognized compression type: {compression}")
168
+
169
+ with compress_method(path, mode=mode) as f:
170
+ getattr(f, method)(*args)
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/_warnings.py ADDED
@@ -0,0 +1,232 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ from contextlib import (
4
+ contextmanager,
5
+ nullcontext,
6
+ )
7
+ import inspect
8
+ import re
9
+ import sys
10
+ from typing import (
11
+ TYPE_CHECKING,
12
+ Literal,
13
+ cast,
14
+ )
15
+ import warnings
16
+
17
+ from pandas.compat import PY311
18
+
19
+ if TYPE_CHECKING:
20
+ from collections.abc import (
21
+ Generator,
22
+ Sequence,
23
+ )
24
+
25
+
26
+ @contextmanager
27
+ def assert_produces_warning(
28
+ expected_warning: type[Warning] | bool | tuple[type[Warning], ...] | None = Warning,
29
+ filter_level: Literal[
30
+ "error", "ignore", "always", "default", "module", "once"
31
+ ] = "always",
32
+ check_stacklevel: bool = True,
33
+ raise_on_extra_warnings: bool = True,
34
+ match: str | None = None,
35
+ ) -> Generator[list[warnings.WarningMessage], None, None]:
36
+ """
37
+ Context manager for running code expected to either raise a specific warning,
38
+ multiple specific warnings, or not raise any warnings. Verifies that the code
39
+ raises the expected warning(s), and that it does not raise any other unexpected
40
+ warnings. It is basically a wrapper around ``warnings.catch_warnings``.
41
+
42
+ Parameters
43
+ ----------
44
+ expected_warning : {Warning, False, tuple[Warning, ...], None}, default Warning
45
+ The type of Exception raised. ``exception.Warning`` is the base
46
+ class for all warnings. To raise multiple types of exceptions,
47
+ pass them as a tuple. To check that no warning is returned,
48
+ specify ``False`` or ``None``.
49
+ filter_level : str or None, default "always"
50
+ Specifies whether warnings are ignored, displayed, or turned
51
+ into errors.
52
+ Valid values are:
53
+
54
+ * "error" - turns matching warnings into exceptions
55
+ * "ignore" - discard the warning
56
+ * "always" - always emit a warning
57
+ * "default" - print the warning the first time it is generated
58
+ from each location
59
+ * "module" - print the warning the first time it is generated
60
+ from each module
61
+ * "once" - print the warning the first time it is generated
62
+
63
+ check_stacklevel : bool, default True
64
+ If True, displays the line that called the function containing
65
+ the warning to show were the function is called. Otherwise, the
66
+ line that implements the function is displayed.
67
+ raise_on_extra_warnings : bool, default True
68
+ Whether extra warnings not of the type `expected_warning` should
69
+ cause the test to fail.
70
+ match : str, optional
71
+ Match warning message.
72
+
73
+ Examples
74
+ --------
75
+ >>> import warnings
76
+ >>> with assert_produces_warning():
77
+ ... warnings.warn(UserWarning())
78
+ ...
79
+ >>> with assert_produces_warning(False):
80
+ ... warnings.warn(RuntimeWarning())
81
+ ...
82
+ Traceback (most recent call last):
83
+ ...
84
+ AssertionError: Caused unexpected warning(s): ['RuntimeWarning'].
85
+ >>> with assert_produces_warning(UserWarning):
86
+ ... warnings.warn(RuntimeWarning())
87
+ Traceback (most recent call last):
88
+ ...
89
+ AssertionError: Did not see expected warning of class 'UserWarning'.
90
+
91
+ ..warn:: This is *not* thread-safe.
92
+ """
93
+ __tracebackhide__ = True
94
+
95
+ with warnings.catch_warnings(record=True) as w:
96
+ warnings.simplefilter(filter_level)
97
+ try:
98
+ yield w
99
+ finally:
100
+ if expected_warning:
101
+ expected_warning = cast(type[Warning], expected_warning)
102
+ _assert_caught_expected_warning(
103
+ caught_warnings=w,
104
+ expected_warning=expected_warning,
105
+ match=match,
106
+ check_stacklevel=check_stacklevel,
107
+ )
108
+ if raise_on_extra_warnings:
109
+ _assert_caught_no_extra_warnings(
110
+ caught_warnings=w,
111
+ expected_warning=expected_warning,
112
+ )
113
+
114
+
115
+ def maybe_produces_warning(warning: type[Warning], condition: bool, **kwargs):
116
+ """
117
+ Return a context manager that possibly checks a warning based on the condition
118
+ """
119
+ if condition:
120
+ return assert_produces_warning(warning, **kwargs)
121
+ else:
122
+ return nullcontext()
123
+
124
+
125
+ def _assert_caught_expected_warning(
126
+ *,
127
+ caught_warnings: Sequence[warnings.WarningMessage],
128
+ expected_warning: type[Warning],
129
+ match: str | None,
130
+ check_stacklevel: bool,
131
+ ) -> None:
132
+ """Assert that there was the expected warning among the caught warnings."""
133
+ saw_warning = False
134
+ matched_message = False
135
+ unmatched_messages = []
136
+
137
+ for actual_warning in caught_warnings:
138
+ if issubclass(actual_warning.category, expected_warning):
139
+ saw_warning = True
140
+
141
+ if check_stacklevel:
142
+ _assert_raised_with_correct_stacklevel(actual_warning)
143
+
144
+ if match is not None:
145
+ if re.search(match, str(actual_warning.message)):
146
+ matched_message = True
147
+ else:
148
+ unmatched_messages.append(actual_warning.message)
149
+
150
+ if not saw_warning:
151
+ raise AssertionError(
152
+ f"Did not see expected warning of class "
153
+ f"{repr(expected_warning.__name__)}"
154
+ )
155
+
156
+ if match and not matched_message:
157
+ raise AssertionError(
158
+ f"Did not see warning {repr(expected_warning.__name__)} "
159
+ f"matching '{match}'. The emitted warning messages are "
160
+ f"{unmatched_messages}"
161
+ )
162
+
163
+
164
+ def _assert_caught_no_extra_warnings(
165
+ *,
166
+ caught_warnings: Sequence[warnings.WarningMessage],
167
+ expected_warning: type[Warning] | bool | tuple[type[Warning], ...] | None,
168
+ ) -> None:
169
+ """Assert that no extra warnings apart from the expected ones are caught."""
170
+ extra_warnings = []
171
+
172
+ for actual_warning in caught_warnings:
173
+ if _is_unexpected_warning(actual_warning, expected_warning):
174
+ # GH#38630 pytest.filterwarnings does not suppress these.
175
+ if actual_warning.category == ResourceWarning:
176
+ # GH 44732: Don't make the CI flaky by filtering SSL-related
177
+ # ResourceWarning from dependencies
178
+ if "unclosed <ssl.SSLSocket" in str(actual_warning.message):
179
+ continue
180
+ # GH 44844: Matplotlib leaves font files open during the entire process
181
+ # upon import. Don't make CI flaky if ResourceWarning raised
182
+ # due to these open files.
183
+ if any("matplotlib" in mod for mod in sys.modules):
184
+ continue
185
+ if PY311 and actual_warning.category == EncodingWarning:
186
+ # EncodingWarnings are checked in the CI
187
+ # pyproject.toml errors on EncodingWarnings in pandas
188
+ # Ignore EncodingWarnings from other libraries
189
+ continue
190
+ extra_warnings.append(
191
+ (
192
+ actual_warning.category.__name__,
193
+ actual_warning.message,
194
+ actual_warning.filename,
195
+ actual_warning.lineno,
196
+ )
197
+ )
198
+
199
+ if extra_warnings:
200
+ raise AssertionError(f"Caused unexpected warning(s): {repr(extra_warnings)}")
201
+
202
+
203
+ def _is_unexpected_warning(
204
+ actual_warning: warnings.WarningMessage,
205
+ expected_warning: type[Warning] | bool | tuple[type[Warning], ...] | None,
206
+ ) -> bool:
207
+ """Check if the actual warning issued is unexpected."""
208
+ if actual_warning and not expected_warning:
209
+ return True
210
+ expected_warning = cast(type[Warning], expected_warning)
211
+ return bool(not issubclass(actual_warning.category, expected_warning))
212
+
213
+
214
+ def _assert_raised_with_correct_stacklevel(
215
+ actual_warning: warnings.WarningMessage,
216
+ ) -> None:
217
+ # https://stackoverflow.com/questions/17407119/python-inspect-stack-is-slow
218
+ frame = inspect.currentframe()
219
+ for _ in range(4):
220
+ frame = frame.f_back # type: ignore[union-attr]
221
+ try:
222
+ caller_filename = inspect.getfile(frame) # type: ignore[arg-type]
223
+ finally:
224
+ # See note in
225
+ # https://docs.python.org/3/library/inspect.html#inspect.Traceback
226
+ del frame
227
+ msg = (
228
+ "Warning not set with correct stacklevel. "
229
+ f"File where warning is raised: {actual_warning.filename} != "
230
+ f"{caller_filename}. Warning message: {actual_warning.message}"
231
+ )
232
+ assert actual_warning.filename == caller_filename, msg
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/asserters.py ADDED
@@ -0,0 +1,1459 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ import operator
4
+ from typing import (
5
+ TYPE_CHECKING,
6
+ Literal,
7
+ NoReturn,
8
+ cast,
9
+ )
10
+
11
+ import numpy as np
12
+
13
+ from pandas._libs import lib
14
+ from pandas._libs.missing import is_matching_na
15
+ from pandas._libs.sparse import SparseIndex
16
+ import pandas._libs.testing as _testing
17
+ from pandas._libs.tslibs.np_datetime import compare_mismatched_resolutions
18
+
19
+ from pandas.core.dtypes.common import (
20
+ is_bool,
21
+ is_float_dtype,
22
+ is_integer_dtype,
23
+ is_number,
24
+ is_numeric_dtype,
25
+ needs_i8_conversion,
26
+ )
27
+ from pandas.core.dtypes.dtypes import (
28
+ CategoricalDtype,
29
+ DatetimeTZDtype,
30
+ ExtensionDtype,
31
+ NumpyEADtype,
32
+ )
33
+ from pandas.core.dtypes.missing import array_equivalent
34
+
35
+ import pandas as pd
36
+ from pandas import (
37
+ Categorical,
38
+ DataFrame,
39
+ DatetimeIndex,
40
+ Index,
41
+ IntervalDtype,
42
+ IntervalIndex,
43
+ MultiIndex,
44
+ PeriodIndex,
45
+ RangeIndex,
46
+ Series,
47
+ TimedeltaIndex,
48
+ )
49
+ from pandas.core.arrays import (
50
+ DatetimeArray,
51
+ ExtensionArray,
52
+ IntervalArray,
53
+ PeriodArray,
54
+ TimedeltaArray,
55
+ )
56
+ from pandas.core.arrays.datetimelike import DatetimeLikeArrayMixin
57
+ from pandas.core.arrays.string_ import StringDtype
58
+ from pandas.core.indexes.api import safe_sort_index
59
+
60
+ from pandas.io.formats.printing import pprint_thing
61
+
62
+ if TYPE_CHECKING:
63
+ from pandas._typing import DtypeObj
64
+
65
+
66
+ def assert_almost_equal(
67
+ left,
68
+ right,
69
+ check_dtype: bool | Literal["equiv"] = "equiv",
70
+ rtol: float = 1.0e-5,
71
+ atol: float = 1.0e-8,
72
+ **kwargs,
73
+ ) -> None:
74
+ """
75
+ Check that the left and right objects are approximately equal.
76
+
77
+ By approximately equal, we refer to objects that are numbers or that
78
+ contain numbers which may be equivalent to specific levels of precision.
79
+
80
+ Parameters
81
+ ----------
82
+ left : object
83
+ right : object
84
+ check_dtype : bool or {'equiv'}, default 'equiv'
85
+ Check dtype if both a and b are the same type. If 'equiv' is passed in,
86
+ then `RangeIndex` and `Index` with int64 dtype are also considered
87
+ equivalent when doing type checking.
88
+ rtol : float, default 1e-5
89
+ Relative tolerance.
90
+ atol : float, default 1e-8
91
+ Absolute tolerance.
92
+ """
93
+ if isinstance(left, Index):
94
+ assert_index_equal(
95
+ left,
96
+ right,
97
+ check_exact=False,
98
+ exact=check_dtype,
99
+ rtol=rtol,
100
+ atol=atol,
101
+ **kwargs,
102
+ )
103
+
104
+ elif isinstance(left, Series):
105
+ assert_series_equal(
106
+ left,
107
+ right,
108
+ check_exact=False,
109
+ check_dtype=check_dtype,
110
+ rtol=rtol,
111
+ atol=atol,
112
+ **kwargs,
113
+ )
114
+
115
+ elif isinstance(left, DataFrame):
116
+ assert_frame_equal(
117
+ left,
118
+ right,
119
+ check_exact=False,
120
+ check_dtype=check_dtype,
121
+ rtol=rtol,
122
+ atol=atol,
123
+ **kwargs,
124
+ )
125
+
126
+ else:
127
+ # Other sequences.
128
+ if check_dtype:
129
+ if is_number(left) and is_number(right):
130
+ # Do not compare numeric classes, like np.float64 and float.
131
+ pass
132
+ elif is_bool(left) and is_bool(right):
133
+ # Do not compare bool classes, like np.bool_ and bool.
134
+ pass
135
+ else:
136
+ if isinstance(left, np.ndarray) or isinstance(right, np.ndarray):
137
+ obj = "numpy array"
138
+ else:
139
+ obj = "Input"
140
+ assert_class_equal(left, right, obj=obj)
141
+
142
+ # if we have "equiv", this becomes True
143
+ _testing.assert_almost_equal(
144
+ left, right, check_dtype=bool(check_dtype), rtol=rtol, atol=atol, **kwargs
145
+ )
146
+
147
+
148
+ def _check_isinstance(left, right, cls) -> None:
149
+ """
150
+ Helper method for our assert_* methods that ensures that
151
+ the two objects being compared have the right type before
152
+ proceeding with the comparison.
153
+
154
+ Parameters
155
+ ----------
156
+ left : The first object being compared.
157
+ right : The second object being compared.
158
+ cls : The class type to check against.
159
+
160
+ Raises
161
+ ------
162
+ AssertionError : Either `left` or `right` is not an instance of `cls`.
163
+ """
164
+ cls_name = cls.__name__
165
+
166
+ if not isinstance(left, cls):
167
+ raise AssertionError(
168
+ f"{cls_name} Expected type {cls}, found {type(left)} instead"
169
+ )
170
+ if not isinstance(right, cls):
171
+ raise AssertionError(
172
+ f"{cls_name} Expected type {cls}, found {type(right)} instead"
173
+ )
174
+
175
+
176
+ def assert_dict_equal(left, right, compare_keys: bool = True) -> None:
177
+ _check_isinstance(left, right, dict)
178
+ _testing.assert_dict_equal(left, right, compare_keys=compare_keys)
179
+
180
+
181
+ def assert_index_equal(
182
+ left: Index,
183
+ right: Index,
184
+ exact: bool | str = "equiv",
185
+ check_names: bool = True,
186
+ check_exact: bool = True,
187
+ check_categorical: bool = True,
188
+ check_order: bool = True,
189
+ rtol: float = 1.0e-5,
190
+ atol: float = 1.0e-8,
191
+ obj: str = "Index",
192
+ ) -> None:
193
+ """
194
+ Check that left and right Index are equal.
195
+
196
+ Parameters
197
+ ----------
198
+ left : Index
199
+ right : Index
200
+ exact : bool or {'equiv'}, default 'equiv'
201
+ Whether to check the Index class, dtype and inferred_type
202
+ are identical. If 'equiv', then RangeIndex can be substituted for
203
+ Index with an int64 dtype as well.
204
+ check_names : bool, default True
205
+ Whether to check the names attribute.
206
+ check_exact : bool, default True
207
+ Whether to compare number exactly.
208
+ check_categorical : bool, default True
209
+ Whether to compare internal Categorical exactly.
210
+ check_order : bool, default True
211
+ Whether to compare the order of index entries as well as their values.
212
+ If True, both indexes must contain the same elements, in the same order.
213
+ If False, both indexes must contain the same elements, but in any order.
214
+ rtol : float, default 1e-5
215
+ Relative tolerance. Only used when check_exact is False.
216
+ atol : float, default 1e-8
217
+ Absolute tolerance. Only used when check_exact is False.
218
+ obj : str, default 'Index'
219
+ Specify object name being compared, internally used to show appropriate
220
+ assertion message.
221
+
222
+ Examples
223
+ --------
224
+ >>> from pandas import testing as tm
225
+ >>> a = pd.Index([1, 2, 3])
226
+ >>> b = pd.Index([1, 2, 3])
227
+ >>> tm.assert_index_equal(a, b)
228
+ """
229
+ __tracebackhide__ = True
230
+
231
+ def _check_types(left, right, obj: str = "Index") -> None:
232
+ if not exact:
233
+ return
234
+
235
+ assert_class_equal(left, right, exact=exact, obj=obj)
236
+ assert_attr_equal("inferred_type", left, right, obj=obj)
237
+
238
+ # Skip exact dtype checking when `check_categorical` is False
239
+ if isinstance(left.dtype, CategoricalDtype) and isinstance(
240
+ right.dtype, CategoricalDtype
241
+ ):
242
+ if check_categorical:
243
+ assert_attr_equal("dtype", left, right, obj=obj)
244
+ assert_index_equal(left.categories, right.categories, exact=exact)
245
+ return
246
+
247
+ assert_attr_equal("dtype", left, right, obj=obj)
248
+
249
+ # instance validation
250
+ _check_isinstance(left, right, Index)
251
+
252
+ # class / dtype comparison
253
+ _check_types(left, right, obj=obj)
254
+
255
+ # level comparison
256
+ if left.nlevels != right.nlevels:
257
+ msg1 = f"{obj} levels are different"
258
+ msg2 = f"{left.nlevels}, {left}"
259
+ msg3 = f"{right.nlevels}, {right}"
260
+ raise_assert_detail(obj, msg1, msg2, msg3)
261
+
262
+ # length comparison
263
+ if len(left) != len(right):
264
+ msg1 = f"{obj} length are different"
265
+ msg2 = f"{len(left)}, {left}"
266
+ msg3 = f"{len(right)}, {right}"
267
+ raise_assert_detail(obj, msg1, msg2, msg3)
268
+
269
+ # If order doesn't matter then sort the index entries
270
+ if not check_order:
271
+ left = safe_sort_index(left)
272
+ right = safe_sort_index(right)
273
+
274
+ # MultiIndex special comparison for little-friendly error messages
275
+ if isinstance(left, MultiIndex):
276
+ right = cast(MultiIndex, right)
277
+
278
+ for level in range(left.nlevels):
279
+ lobj = f"MultiIndex level [{level}]"
280
+ try:
281
+ # try comparison on levels/codes to avoid densifying MultiIndex
282
+ assert_index_equal(
283
+ left.levels[level],
284
+ right.levels[level],
285
+ exact=exact,
286
+ check_names=check_names,
287
+ check_exact=check_exact,
288
+ check_categorical=check_categorical,
289
+ rtol=rtol,
290
+ atol=atol,
291
+ obj=lobj,
292
+ )
293
+ assert_numpy_array_equal(left.codes[level], right.codes[level])
294
+ except AssertionError:
295
+ llevel = left.get_level_values(level)
296
+ rlevel = right.get_level_values(level)
297
+
298
+ assert_index_equal(
299
+ llevel,
300
+ rlevel,
301
+ exact=exact,
302
+ check_names=check_names,
303
+ check_exact=check_exact,
304
+ check_categorical=check_categorical,
305
+ rtol=rtol,
306
+ atol=atol,
307
+ obj=lobj,
308
+ )
309
+ # get_level_values may change dtype
310
+ _check_types(left.levels[level], right.levels[level], obj=obj)
311
+
312
+ # skip exact index checking when `check_categorical` is False
313
+ elif check_exact and check_categorical:
314
+ if not left.equals(right):
315
+ mismatch = left._values != right._values
316
+
317
+ if not isinstance(mismatch, np.ndarray):
318
+ mismatch = cast("ExtensionArray", mismatch).fillna(True)
319
+
320
+ diff = np.sum(mismatch.astype(int)) * 100.0 / len(left)
321
+ msg = f"{obj} values are different ({np.round(diff, 5)} %)"
322
+ raise_assert_detail(obj, msg, left, right)
323
+ else:
324
+ # if we have "equiv", this becomes True
325
+ exact_bool = bool(exact)
326
+ _testing.assert_almost_equal(
327
+ left.values,
328
+ right.values,
329
+ rtol=rtol,
330
+ atol=atol,
331
+ check_dtype=exact_bool,
332
+ obj=obj,
333
+ lobj=left,
334
+ robj=right,
335
+ )
336
+
337
+ # metadata comparison
338
+ if check_names:
339
+ assert_attr_equal("names", left, right, obj=obj)
340
+ if isinstance(left, PeriodIndex) or isinstance(right, PeriodIndex):
341
+ assert_attr_equal("dtype", left, right, obj=obj)
342
+ if isinstance(left, IntervalIndex) or isinstance(right, IntervalIndex):
343
+ assert_interval_array_equal(left._values, right._values)
344
+
345
+ if check_categorical:
346
+ if isinstance(left.dtype, CategoricalDtype) or isinstance(
347
+ right.dtype, CategoricalDtype
348
+ ):
349
+ assert_categorical_equal(left._values, right._values, obj=f"{obj} category")
350
+
351
+
352
+ def assert_class_equal(
353
+ left, right, exact: bool | str = True, obj: str = "Input"
354
+ ) -> None:
355
+ """
356
+ Checks classes are equal.
357
+ """
358
+ __tracebackhide__ = True
359
+
360
+ def repr_class(x):
361
+ if isinstance(x, Index):
362
+ # return Index as it is to include values in the error message
363
+ return x
364
+
365
+ return type(x).__name__
366
+
367
+ def is_class_equiv(idx: Index) -> bool:
368
+ """Classes that are a RangeIndex (sub-)instance or exactly an `Index` .
369
+
370
+ This only checks class equivalence. There is a separate check that the
371
+ dtype is int64.
372
+ """
373
+ return type(idx) is Index or isinstance(idx, RangeIndex)
374
+
375
+ if type(left) == type(right):
376
+ return
377
+
378
+ if exact == "equiv":
379
+ if is_class_equiv(left) and is_class_equiv(right):
380
+ return
381
+
382
+ msg = f"{obj} classes are different"
383
+ raise_assert_detail(obj, msg, repr_class(left), repr_class(right))
384
+
385
+
386
+ def assert_attr_equal(attr: str, left, right, obj: str = "Attributes") -> None:
387
+ """
388
+ Check attributes are equal. Both objects must have attribute.
389
+
390
+ Parameters
391
+ ----------
392
+ attr : str
393
+ Attribute name being compared.
394
+ left : object
395
+ right : object
396
+ obj : str, default 'Attributes'
397
+ Specify object name being compared, internally used to show appropriate
398
+ assertion message
399
+ """
400
+ __tracebackhide__ = True
401
+
402
+ left_attr = getattr(left, attr)
403
+ right_attr = getattr(right, attr)
404
+
405
+ if left_attr is right_attr or is_matching_na(left_attr, right_attr):
406
+ # e.g. both np.nan, both NaT, both pd.NA, ...
407
+ return None
408
+
409
+ try:
410
+ result = left_attr == right_attr
411
+ except TypeError:
412
+ # datetimetz on rhs may raise TypeError
413
+ result = False
414
+ if (left_attr is pd.NA) ^ (right_attr is pd.NA):
415
+ result = False
416
+ elif not isinstance(result, bool):
417
+ result = result.all()
418
+
419
+ if not result:
420
+ msg = f'Attribute "{attr}" are different'
421
+ raise_assert_detail(obj, msg, left_attr, right_attr)
422
+ return None
423
+
424
+
425
+ def assert_is_valid_plot_return_object(objs) -> None:
426
+ from matplotlib.artist import Artist
427
+ from matplotlib.axes import Axes
428
+
429
+ if isinstance(objs, (Series, np.ndarray)):
430
+ if isinstance(objs, Series):
431
+ objs = objs._values
432
+ for el in objs.ravel():
433
+ msg = (
434
+ "one of 'objs' is not a matplotlib Axes instance, "
435
+ f"type encountered {repr(type(el).__name__)}"
436
+ )
437
+ assert isinstance(el, (Axes, dict)), msg
438
+ else:
439
+ msg = (
440
+ "objs is neither an ndarray of Artist instances nor a single "
441
+ "ArtistArtist instance, tuple, or dict, 'objs' is a "
442
+ f"{repr(type(objs).__name__)}"
443
+ )
444
+ assert isinstance(objs, (Artist, tuple, dict)), msg
445
+
446
+
447
+ def assert_is_sorted(seq) -> None:
448
+ """Assert that the sequence is sorted."""
449
+ if isinstance(seq, (Index, Series)):
450
+ seq = seq.values
451
+ # sorting does not change precisions
452
+ if isinstance(seq, np.ndarray):
453
+ assert_numpy_array_equal(seq, np.sort(np.array(seq)))
454
+ else:
455
+ assert_extension_array_equal(seq, seq[seq.argsort()])
456
+
457
+
458
+ def assert_categorical_equal(
459
+ left,
460
+ right,
461
+ check_dtype: bool = True,
462
+ check_category_order: bool = True,
463
+ obj: str = "Categorical",
464
+ ) -> None:
465
+ """
466
+ Test that Categoricals are equivalent.
467
+
468
+ Parameters
469
+ ----------
470
+ left : Categorical
471
+ right : Categorical
472
+ check_dtype : bool, default True
473
+ Check that integer dtype of the codes are the same.
474
+ check_category_order : bool, default True
475
+ Whether the order of the categories should be compared, which
476
+ implies identical integer codes. If False, only the resulting
477
+ values are compared. The ordered attribute is
478
+ checked regardless.
479
+ obj : str, default 'Categorical'
480
+ Specify object name being compared, internally used to show appropriate
481
+ assertion message.
482
+ """
483
+ _check_isinstance(left, right, Categorical)
484
+
485
+ exact: bool | str
486
+ if isinstance(left.categories, RangeIndex) or isinstance(
487
+ right.categories, RangeIndex
488
+ ):
489
+ exact = "equiv"
490
+ else:
491
+ # We still want to require exact matches for Index
492
+ exact = True
493
+
494
+ if check_category_order:
495
+ assert_index_equal(
496
+ left.categories, right.categories, obj=f"{obj}.categories", exact=exact
497
+ )
498
+ assert_numpy_array_equal(
499
+ left.codes, right.codes, check_dtype=check_dtype, obj=f"{obj}.codes"
500
+ )
501
+ else:
502
+ try:
503
+ lc = left.categories.sort_values()
504
+ rc = right.categories.sort_values()
505
+ except TypeError:
506
+ # e.g. '<' not supported between instances of 'int' and 'str'
507
+ lc, rc = left.categories, right.categories
508
+ assert_index_equal(lc, rc, obj=f"{obj}.categories", exact=exact)
509
+ assert_index_equal(
510
+ left.categories.take(left.codes),
511
+ right.categories.take(right.codes),
512
+ obj=f"{obj}.values",
513
+ exact=exact,
514
+ )
515
+
516
+ assert_attr_equal("ordered", left, right, obj=obj)
517
+
518
+
519
+ def assert_interval_array_equal(
520
+ left, right, exact: bool | Literal["equiv"] = "equiv", obj: str = "IntervalArray"
521
+ ) -> None:
522
+ """
523
+ Test that two IntervalArrays are equivalent.
524
+
525
+ Parameters
526
+ ----------
527
+ left, right : IntervalArray
528
+ The IntervalArrays to compare.
529
+ exact : bool or {'equiv'}, default 'equiv'
530
+ Whether to check the Index class, dtype and inferred_type
531
+ are identical. If 'equiv', then RangeIndex can be substituted for
532
+ Index with an int64 dtype as well.
533
+ obj : str, default 'IntervalArray'
534
+ Specify object name being compared, internally used to show appropriate
535
+ assertion message
536
+ """
537
+ _check_isinstance(left, right, IntervalArray)
538
+
539
+ kwargs = {}
540
+ if left._left.dtype.kind in "mM":
541
+ # We have a DatetimeArray or TimedeltaArray
542
+ kwargs["check_freq"] = False
543
+
544
+ assert_equal(left._left, right._left, obj=f"{obj}.left", **kwargs)
545
+ assert_equal(left._right, right._right, obj=f"{obj}.left", **kwargs)
546
+
547
+ assert_attr_equal("closed", left, right, obj=obj)
548
+
549
+
550
+ def assert_period_array_equal(left, right, obj: str = "PeriodArray") -> None:
551
+ _check_isinstance(left, right, PeriodArray)
552
+
553
+ assert_numpy_array_equal(left._ndarray, right._ndarray, obj=f"{obj}._ndarray")
554
+ assert_attr_equal("dtype", left, right, obj=obj)
555
+
556
+
557
+ def assert_datetime_array_equal(
558
+ left, right, obj: str = "DatetimeArray", check_freq: bool = True
559
+ ) -> None:
560
+ __tracebackhide__ = True
561
+ _check_isinstance(left, right, DatetimeArray)
562
+
563
+ assert_numpy_array_equal(left._ndarray, right._ndarray, obj=f"{obj}._ndarray")
564
+ if check_freq:
565
+ assert_attr_equal("freq", left, right, obj=obj)
566
+ assert_attr_equal("tz", left, right, obj=obj)
567
+
568
+
569
+ def assert_timedelta_array_equal(
570
+ left, right, obj: str = "TimedeltaArray", check_freq: bool = True
571
+ ) -> None:
572
+ __tracebackhide__ = True
573
+ _check_isinstance(left, right, TimedeltaArray)
574
+ assert_numpy_array_equal(left._ndarray, right._ndarray, obj=f"{obj}._ndarray")
575
+ if check_freq:
576
+ assert_attr_equal("freq", left, right, obj=obj)
577
+
578
+
579
+ def raise_assert_detail(
580
+ obj, message, left, right, diff=None, first_diff=None, index_values=None
581
+ ) -> NoReturn:
582
+ __tracebackhide__ = True
583
+
584
+ msg = f"""{obj} are different
585
+
586
+ {message}"""
587
+
588
+ if isinstance(index_values, Index):
589
+ index_values = np.asarray(index_values)
590
+
591
+ if isinstance(index_values, np.ndarray):
592
+ msg += f"\n[index]: {pprint_thing(index_values)}"
593
+
594
+ if isinstance(left, np.ndarray):
595
+ left = pprint_thing(left)
596
+ elif isinstance(left, (CategoricalDtype, NumpyEADtype)):
597
+ left = repr(left)
598
+ elif isinstance(left, StringDtype):
599
+ # TODO(infer_string) this special case could be avoided if we have
600
+ # a more informative repr https://github.com/pandas-dev/pandas/issues/59342
601
+ left = f"StringDtype(storage={left.storage}, na_value={left.na_value})"
602
+
603
+ if isinstance(right, np.ndarray):
604
+ right = pprint_thing(right)
605
+ elif isinstance(right, (CategoricalDtype, NumpyEADtype)):
606
+ right = repr(right)
607
+ elif isinstance(right, StringDtype):
608
+ right = f"StringDtype(storage={right.storage}, na_value={right.na_value})"
609
+
610
+ msg += f"""
611
+ [left]: {left}
612
+ [right]: {right}"""
613
+
614
+ if diff is not None:
615
+ msg += f"\n[diff]: {diff}"
616
+
617
+ if first_diff is not None:
618
+ msg += f"\n{first_diff}"
619
+
620
+ raise AssertionError(msg)
621
+
622
+
623
+ def assert_numpy_array_equal(
624
+ left,
625
+ right,
626
+ strict_nan: bool = False,
627
+ check_dtype: bool | Literal["equiv"] = True,
628
+ err_msg=None,
629
+ check_same=None,
630
+ obj: str = "numpy array",
631
+ index_values=None,
632
+ ) -> None:
633
+ """
634
+ Check that 'np.ndarray' is equivalent.
635
+
636
+ Parameters
637
+ ----------
638
+ left, right : numpy.ndarray or iterable
639
+ The two arrays to be compared.
640
+ strict_nan : bool, default False
641
+ If True, consider NaN and None to be different.
642
+ check_dtype : bool, default True
643
+ Check dtype if both a and b are np.ndarray.
644
+ err_msg : str, default None
645
+ If provided, used as assertion message.
646
+ check_same : None|'copy'|'same', default None
647
+ Ensure left and right refer/do not refer to the same memory area.
648
+ obj : str, default 'numpy array'
649
+ Specify object name being compared, internally used to show appropriate
650
+ assertion message.
651
+ index_values : Index | numpy.ndarray, default None
652
+ optional index (shared by both left and right), used in output.
653
+ """
654
+ __tracebackhide__ = True
655
+
656
+ # instance validation
657
+ # Show a detailed error message when classes are different
658
+ assert_class_equal(left, right, obj=obj)
659
+ # both classes must be an np.ndarray
660
+ _check_isinstance(left, right, np.ndarray)
661
+
662
+ def _get_base(obj):
663
+ return obj.base if getattr(obj, "base", None) is not None else obj
664
+
665
+ left_base = _get_base(left)
666
+ right_base = _get_base(right)
667
+
668
+ if check_same == "same":
669
+ if left_base is not right_base:
670
+ raise AssertionError(f"{repr(left_base)} is not {repr(right_base)}")
671
+ elif check_same == "copy":
672
+ if left_base is right_base:
673
+ raise AssertionError(f"{repr(left_base)} is {repr(right_base)}")
674
+
675
+ def _raise(left, right, err_msg) -> NoReturn:
676
+ if err_msg is None:
677
+ if left.shape != right.shape:
678
+ raise_assert_detail(
679
+ obj, f"{obj} shapes are different", left.shape, right.shape
680
+ )
681
+
682
+ diff = 0
683
+ for left_arr, right_arr in zip(left, right):
684
+ # count up differences
685
+ if not array_equivalent(left_arr, right_arr, strict_nan=strict_nan):
686
+ diff += 1
687
+
688
+ diff = diff * 100.0 / left.size
689
+ msg = f"{obj} values are different ({np.round(diff, 5)} %)"
690
+ raise_assert_detail(obj, msg, left, right, index_values=index_values)
691
+
692
+ raise AssertionError(err_msg)
693
+
694
+ # compare shape and values
695
+ if not array_equivalent(left, right, strict_nan=strict_nan):
696
+ _raise(left, right, err_msg)
697
+
698
+ if check_dtype:
699
+ if isinstance(left, np.ndarray) and isinstance(right, np.ndarray):
700
+ assert_attr_equal("dtype", left, right, obj=obj)
701
+
702
+
703
+ def assert_extension_array_equal(
704
+ left,
705
+ right,
706
+ check_dtype: bool | Literal["equiv"] = True,
707
+ index_values=None,
708
+ check_exact: bool | lib.NoDefault = lib.no_default,
709
+ rtol: float | lib.NoDefault = lib.no_default,
710
+ atol: float | lib.NoDefault = lib.no_default,
711
+ obj: str = "ExtensionArray",
712
+ ) -> None:
713
+ """
714
+ Check that left and right ExtensionArrays are equal.
715
+
716
+ Parameters
717
+ ----------
718
+ left, right : ExtensionArray
719
+ The two arrays to compare.
720
+ check_dtype : bool, default True
721
+ Whether to check if the ExtensionArray dtypes are identical.
722
+ index_values : Index | numpy.ndarray, default None
723
+ Optional index (shared by both left and right), used in output.
724
+ check_exact : bool, default False
725
+ Whether to compare number exactly.
726
+
727
+ .. versionchanged:: 2.2.0
728
+
729
+ Defaults to True for integer dtypes if none of
730
+ ``check_exact``, ``rtol`` and ``atol`` are specified.
731
+ rtol : float, default 1e-5
732
+ Relative tolerance. Only used when check_exact is False.
733
+ atol : float, default 1e-8
734
+ Absolute tolerance. Only used when check_exact is False.
735
+ obj : str, default 'ExtensionArray'
736
+ Specify object name being compared, internally used to show appropriate
737
+ assertion message.
738
+
739
+ .. versionadded:: 2.0.0
740
+
741
+ Notes
742
+ -----
743
+ Missing values are checked separately from valid values.
744
+ A mask of missing values is computed for each and checked to match.
745
+ The remaining all-valid values are cast to object dtype and checked.
746
+
747
+ Examples
748
+ --------
749
+ >>> from pandas import testing as tm
750
+ >>> a = pd.Series([1, 2, 3, 4])
751
+ >>> b, c = a.array, a.array
752
+ >>> tm.assert_extension_array_equal(b, c)
753
+ """
754
+ if (
755
+ check_exact is lib.no_default
756
+ and rtol is lib.no_default
757
+ and atol is lib.no_default
758
+ ):
759
+ check_exact = (
760
+ is_numeric_dtype(left.dtype)
761
+ and not is_float_dtype(left.dtype)
762
+ or is_numeric_dtype(right.dtype)
763
+ and not is_float_dtype(right.dtype)
764
+ )
765
+ elif check_exact is lib.no_default:
766
+ check_exact = False
767
+
768
+ rtol = rtol if rtol is not lib.no_default else 1.0e-5
769
+ atol = atol if atol is not lib.no_default else 1.0e-8
770
+
771
+ assert isinstance(left, ExtensionArray), "left is not an ExtensionArray"
772
+ assert isinstance(right, ExtensionArray), "right is not an ExtensionArray"
773
+ if check_dtype:
774
+ assert_attr_equal("dtype", left, right, obj=f"Attributes of {obj}")
775
+
776
+ if (
777
+ isinstance(left, DatetimeLikeArrayMixin)
778
+ and isinstance(right, DatetimeLikeArrayMixin)
779
+ and type(right) == type(left)
780
+ ):
781
+ # GH 52449
782
+ if not check_dtype and left.dtype.kind in "mM":
783
+ if not isinstance(left.dtype, np.dtype):
784
+ l_unit = cast(DatetimeTZDtype, left.dtype).unit
785
+ else:
786
+ l_unit = np.datetime_data(left.dtype)[0]
787
+ if not isinstance(right.dtype, np.dtype):
788
+ r_unit = cast(DatetimeTZDtype, right.dtype).unit
789
+ else:
790
+ r_unit = np.datetime_data(right.dtype)[0]
791
+ if (
792
+ l_unit != r_unit
793
+ and compare_mismatched_resolutions(
794
+ left._ndarray, right._ndarray, operator.eq
795
+ ).all()
796
+ ):
797
+ return
798
+ # Avoid slow object-dtype comparisons
799
+ # np.asarray for case where we have a np.MaskedArray
800
+ assert_numpy_array_equal(
801
+ np.asarray(left.asi8),
802
+ np.asarray(right.asi8),
803
+ index_values=index_values,
804
+ obj=obj,
805
+ )
806
+ return
807
+
808
+ left_na = np.asarray(left.isna())
809
+ right_na = np.asarray(right.isna())
810
+ assert_numpy_array_equal(
811
+ left_na, right_na, obj=f"{obj} NA mask", index_values=index_values
812
+ )
813
+
814
+ # Specifically for StringArrayNumpySemantics, validate here we have a valid array
815
+ if (
816
+ isinstance(left.dtype, StringDtype)
817
+ and left.dtype.storage == "python"
818
+ and left.dtype.na_value is np.nan
819
+ ):
820
+ assert np.all(
821
+ [np.isnan(val) for val in left._ndarray[left_na]] # type: ignore[attr-defined]
822
+ ), "wrong missing value sentinels"
823
+ if (
824
+ isinstance(right.dtype, StringDtype)
825
+ and right.dtype.storage == "python"
826
+ and right.dtype.na_value is np.nan
827
+ ):
828
+ assert np.all(
829
+ [np.isnan(val) for val in right._ndarray[right_na]] # type: ignore[attr-defined]
830
+ ), "wrong missing value sentinels"
831
+
832
+ left_valid = left[~left_na].to_numpy(dtype=object)
833
+ right_valid = right[~right_na].to_numpy(dtype=object)
834
+ if check_exact:
835
+ assert_numpy_array_equal(
836
+ left_valid, right_valid, obj=obj, index_values=index_values
837
+ )
838
+ else:
839
+ _testing.assert_almost_equal(
840
+ left_valid,
841
+ right_valid,
842
+ check_dtype=bool(check_dtype),
843
+ rtol=rtol,
844
+ atol=atol,
845
+ obj=obj,
846
+ index_values=index_values,
847
+ )
848
+
849
+
850
+ # This could be refactored to use the NDFrame.equals method
851
+ def assert_series_equal(
852
+ left,
853
+ right,
854
+ check_dtype: bool | Literal["equiv"] = True,
855
+ check_index_type: bool | Literal["equiv"] = "equiv",
856
+ check_series_type: bool = True,
857
+ check_names: bool = True,
858
+ check_exact: bool | lib.NoDefault = lib.no_default,
859
+ check_datetimelike_compat: bool = False,
860
+ check_categorical: bool = True,
861
+ check_category_order: bool = True,
862
+ check_freq: bool = True,
863
+ check_flags: bool = True,
864
+ rtol: float | lib.NoDefault = lib.no_default,
865
+ atol: float | lib.NoDefault = lib.no_default,
866
+ obj: str = "Series",
867
+ *,
868
+ check_index: bool = True,
869
+ check_like: bool = False,
870
+ ) -> None:
871
+ """
872
+ Check that left and right Series are equal.
873
+
874
+ Parameters
875
+ ----------
876
+ left : Series
877
+ right : Series
878
+ check_dtype : bool, default True
879
+ Whether to check the Series dtype is identical.
880
+ check_index_type : bool or {'equiv'}, default 'equiv'
881
+ Whether to check the Index class, dtype and inferred_type
882
+ are identical.
883
+ check_series_type : bool, default True
884
+ Whether to check the Series class is identical.
885
+ check_names : bool, default True
886
+ Whether to check the Series and Index names attribute.
887
+ check_exact : bool, default False
888
+ Whether to compare number exactly.
889
+
890
+ .. versionchanged:: 2.2.0
891
+
892
+ Defaults to True for integer dtypes if none of
893
+ ``check_exact``, ``rtol`` and ``atol`` are specified.
894
+ check_datetimelike_compat : bool, default False
895
+ Compare datetime-like which is comparable ignoring dtype.
896
+ check_categorical : bool, default True
897
+ Whether to compare internal Categorical exactly.
898
+ check_category_order : bool, default True
899
+ Whether to compare category order of internal Categoricals.
900
+ check_freq : bool, default True
901
+ Whether to check the `freq` attribute on a DatetimeIndex or TimedeltaIndex.
902
+ check_flags : bool, default True
903
+ Whether to check the `flags` attribute.
904
+ rtol : float, default 1e-5
905
+ Relative tolerance. Only used when check_exact is False.
906
+ atol : float, default 1e-8
907
+ Absolute tolerance. Only used when check_exact is False.
908
+ obj : str, default 'Series'
909
+ Specify object name being compared, internally used to show appropriate
910
+ assertion message.
911
+ check_index : bool, default True
912
+ Whether to check index equivalence. If False, then compare only values.
913
+
914
+ .. versionadded:: 1.3.0
915
+ check_like : bool, default False
916
+ If True, ignore the order of the index. Must be False if check_index is False.
917
+ Note: same labels must be with the same data.
918
+
919
+ .. versionadded:: 1.5.0
920
+
921
+ Examples
922
+ --------
923
+ >>> from pandas import testing as tm
924
+ >>> a = pd.Series([1, 2, 3, 4])
925
+ >>> b = pd.Series([1, 2, 3, 4])
926
+ >>> tm.assert_series_equal(a, b)
927
+ """
928
+ __tracebackhide__ = True
929
+ check_exact_index = False if check_exact is lib.no_default else check_exact
930
+ if (
931
+ check_exact is lib.no_default
932
+ and rtol is lib.no_default
933
+ and atol is lib.no_default
934
+ ):
935
+ check_exact = (
936
+ is_numeric_dtype(left.dtype)
937
+ and not is_float_dtype(left.dtype)
938
+ or is_numeric_dtype(right.dtype)
939
+ and not is_float_dtype(right.dtype)
940
+ )
941
+ elif check_exact is lib.no_default:
942
+ check_exact = False
943
+
944
+ rtol = rtol if rtol is not lib.no_default else 1.0e-5
945
+ atol = atol if atol is not lib.no_default else 1.0e-8
946
+
947
+ if not check_index and check_like:
948
+ raise ValueError("check_like must be False if check_index is False")
949
+
950
+ # instance validation
951
+ _check_isinstance(left, right, Series)
952
+
953
+ if check_series_type:
954
+ assert_class_equal(left, right, obj=obj)
955
+
956
+ # length comparison
957
+ if len(left) != len(right):
958
+ msg1 = f"{len(left)}, {left.index}"
959
+ msg2 = f"{len(right)}, {right.index}"
960
+ raise_assert_detail(obj, "Series length are different", msg1, msg2)
961
+
962
+ if check_flags:
963
+ assert left.flags == right.flags, f"{repr(left.flags)} != {repr(right.flags)}"
964
+
965
+ if check_index:
966
+ # GH #38183
967
+ assert_index_equal(
968
+ left.index,
969
+ right.index,
970
+ exact=check_index_type,
971
+ check_names=check_names,
972
+ check_exact=check_exact_index,
973
+ check_categorical=check_categorical,
974
+ check_order=not check_like,
975
+ rtol=rtol,
976
+ atol=atol,
977
+ obj=f"{obj}.index",
978
+ )
979
+
980
+ if check_like:
981
+ left = left.reindex_like(right)
982
+
983
+ if check_freq and isinstance(left.index, (DatetimeIndex, TimedeltaIndex)):
984
+ lidx = left.index
985
+ ridx = right.index
986
+ assert lidx.freq == ridx.freq, (lidx.freq, ridx.freq)
987
+
988
+ if check_dtype:
989
+ # We want to skip exact dtype checking when `check_categorical`
990
+ # is False. We'll still raise if only one is a `Categorical`,
991
+ # regardless of `check_categorical`
992
+ if (
993
+ isinstance(left.dtype, CategoricalDtype)
994
+ and isinstance(right.dtype, CategoricalDtype)
995
+ and not check_categorical
996
+ ):
997
+ pass
998
+ else:
999
+ assert_attr_equal("dtype", left, right, obj=f"Attributes of {obj}")
1000
+ if check_exact:
1001
+ left_values = left._values
1002
+ right_values = right._values
1003
+ # Only check exact if dtype is numeric
1004
+ if isinstance(left_values, ExtensionArray) and isinstance(
1005
+ right_values, ExtensionArray
1006
+ ):
1007
+ assert_extension_array_equal(
1008
+ left_values,
1009
+ right_values,
1010
+ check_dtype=check_dtype,
1011
+ index_values=left.index,
1012
+ obj=str(obj),
1013
+ )
1014
+ else:
1015
+ # convert both to NumPy if not, check_dtype would raise earlier
1016
+ lv, rv = left_values, right_values
1017
+ if isinstance(left_values, ExtensionArray):
1018
+ lv = left_values.to_numpy()
1019
+ if isinstance(right_values, ExtensionArray):
1020
+ rv = right_values.to_numpy()
1021
+ assert_numpy_array_equal(
1022
+ lv,
1023
+ rv,
1024
+ check_dtype=check_dtype,
1025
+ obj=str(obj),
1026
+ index_values=left.index,
1027
+ )
1028
+ elif check_datetimelike_compat and (
1029
+ needs_i8_conversion(left.dtype) or needs_i8_conversion(right.dtype)
1030
+ ):
1031
+ # we want to check only if we have compat dtypes
1032
+ # e.g. integer and M|m are NOT compat, but we can simply check
1033
+ # the values in that case
1034
+
1035
+ # datetimelike may have different objects (e.g. datetime.datetime
1036
+ # vs Timestamp) but will compare equal
1037
+ if not Index(left._values).equals(Index(right._values)):
1038
+ msg = (
1039
+ f"[datetimelike_compat=True] {left._values} "
1040
+ f"is not equal to {right._values}."
1041
+ )
1042
+ raise AssertionError(msg)
1043
+ elif isinstance(left.dtype, IntervalDtype) and isinstance(
1044
+ right.dtype, IntervalDtype
1045
+ ):
1046
+ assert_interval_array_equal(left.array, right.array)
1047
+ elif isinstance(left.dtype, CategoricalDtype) or isinstance(
1048
+ right.dtype, CategoricalDtype
1049
+ ):
1050
+ _testing.assert_almost_equal(
1051
+ left._values,
1052
+ right._values,
1053
+ rtol=rtol,
1054
+ atol=atol,
1055
+ check_dtype=bool(check_dtype),
1056
+ obj=str(obj),
1057
+ index_values=left.index,
1058
+ )
1059
+ elif isinstance(left.dtype, ExtensionDtype) and isinstance(
1060
+ right.dtype, ExtensionDtype
1061
+ ):
1062
+ assert_extension_array_equal(
1063
+ left._values,
1064
+ right._values,
1065
+ rtol=rtol,
1066
+ atol=atol,
1067
+ check_dtype=check_dtype,
1068
+ index_values=left.index,
1069
+ obj=str(obj),
1070
+ )
1071
+ elif is_extension_array_dtype_and_needs_i8_conversion(
1072
+ left.dtype, right.dtype
1073
+ ) or is_extension_array_dtype_and_needs_i8_conversion(right.dtype, left.dtype):
1074
+ assert_extension_array_equal(
1075
+ left._values,
1076
+ right._values,
1077
+ check_dtype=check_dtype,
1078
+ index_values=left.index,
1079
+ obj=str(obj),
1080
+ )
1081
+ elif needs_i8_conversion(left.dtype) and needs_i8_conversion(right.dtype):
1082
+ # DatetimeArray or TimedeltaArray
1083
+ assert_extension_array_equal(
1084
+ left._values,
1085
+ right._values,
1086
+ check_dtype=check_dtype,
1087
+ index_values=left.index,
1088
+ obj=str(obj),
1089
+ )
1090
+ else:
1091
+ _testing.assert_almost_equal(
1092
+ left._values,
1093
+ right._values,
1094
+ rtol=rtol,
1095
+ atol=atol,
1096
+ check_dtype=bool(check_dtype),
1097
+ obj=str(obj),
1098
+ index_values=left.index,
1099
+ )
1100
+
1101
+ # metadata comparison
1102
+ if check_names:
1103
+ assert_attr_equal("name", left, right, obj=obj)
1104
+
1105
+ if check_categorical:
1106
+ if isinstance(left.dtype, CategoricalDtype) or isinstance(
1107
+ right.dtype, CategoricalDtype
1108
+ ):
1109
+ assert_categorical_equal(
1110
+ left._values,
1111
+ right._values,
1112
+ obj=f"{obj} category",
1113
+ check_category_order=check_category_order,
1114
+ )
1115
+
1116
+
1117
+ # This could be refactored to use the NDFrame.equals method
1118
+ def assert_frame_equal(
1119
+ left,
1120
+ right,
1121
+ check_dtype: bool | Literal["equiv"] = True,
1122
+ check_index_type: bool | Literal["equiv"] = "equiv",
1123
+ check_column_type: bool | Literal["equiv"] = "equiv",
1124
+ check_frame_type: bool = True,
1125
+ check_names: bool = True,
1126
+ by_blocks: bool = False,
1127
+ check_exact: bool | lib.NoDefault = lib.no_default,
1128
+ check_datetimelike_compat: bool = False,
1129
+ check_categorical: bool = True,
1130
+ check_like: bool = False,
1131
+ check_freq: bool = True,
1132
+ check_flags: bool = True,
1133
+ rtol: float | lib.NoDefault = lib.no_default,
1134
+ atol: float | lib.NoDefault = lib.no_default,
1135
+ obj: str = "DataFrame",
1136
+ ) -> None:
1137
+ """
1138
+ Check that left and right DataFrame are equal.
1139
+
1140
+ This function is intended to compare two DataFrames and output any
1141
+ differences. It is mostly intended for use in unit tests.
1142
+ Additional parameters allow varying the strictness of the
1143
+ equality checks performed.
1144
+
1145
+ Parameters
1146
+ ----------
1147
+ left : DataFrame
1148
+ First DataFrame to compare.
1149
+ right : DataFrame
1150
+ Second DataFrame to compare.
1151
+ check_dtype : bool, default True
1152
+ Whether to check the DataFrame dtype is identical.
1153
+ check_index_type : bool or {'equiv'}, default 'equiv'
1154
+ Whether to check the Index class, dtype and inferred_type
1155
+ are identical.
1156
+ check_column_type : bool or {'equiv'}, default 'equiv'
1157
+ Whether to check the columns class, dtype and inferred_type
1158
+ are identical. Is passed as the ``exact`` argument of
1159
+ :func:`assert_index_equal`.
1160
+ check_frame_type : bool, default True
1161
+ Whether to check the DataFrame class is identical.
1162
+ check_names : bool, default True
1163
+ Whether to check that the `names` attribute for both the `index`
1164
+ and `column` attributes of the DataFrame is identical.
1165
+ by_blocks : bool, default False
1166
+ Specify how to compare internal data. If False, compare by columns.
1167
+ If True, compare by blocks.
1168
+ check_exact : bool, default False
1169
+ Whether to compare number exactly.
1170
+
1171
+ .. versionchanged:: 2.2.0
1172
+
1173
+ Defaults to True for integer dtypes if none of
1174
+ ``check_exact``, ``rtol`` and ``atol`` are specified.
1175
+ check_datetimelike_compat : bool, default False
1176
+ Compare datetime-like which is comparable ignoring dtype.
1177
+ check_categorical : bool, default True
1178
+ Whether to compare internal Categorical exactly.
1179
+ check_like : bool, default False
1180
+ If True, ignore the order of index & columns.
1181
+ Note: index labels must match their respective rows
1182
+ (same as in columns) - same labels must be with the same data.
1183
+ check_freq : bool, default True
1184
+ Whether to check the `freq` attribute on a DatetimeIndex or TimedeltaIndex.
1185
+ check_flags : bool, default True
1186
+ Whether to check the `flags` attribute.
1187
+ rtol : float, default 1e-5
1188
+ Relative tolerance. Only used when check_exact is False.
1189
+ atol : float, default 1e-8
1190
+ Absolute tolerance. Only used when check_exact is False.
1191
+ obj : str, default 'DataFrame'
1192
+ Specify object name being compared, internally used to show appropriate
1193
+ assertion message.
1194
+
1195
+ See Also
1196
+ --------
1197
+ assert_series_equal : Equivalent method for asserting Series equality.
1198
+ DataFrame.equals : Check DataFrame equality.
1199
+
1200
+ Examples
1201
+ --------
1202
+ This example shows comparing two DataFrames that are equal
1203
+ but with columns of differing dtypes.
1204
+
1205
+ >>> from pandas.testing import assert_frame_equal
1206
+ >>> df1 = pd.DataFrame({'a': [1, 2], 'b': [3, 4]})
1207
+ >>> df2 = pd.DataFrame({'a': [1, 2], 'b': [3.0, 4.0]})
1208
+
1209
+ df1 equals itself.
1210
+
1211
+ >>> assert_frame_equal(df1, df1)
1212
+
1213
+ df1 differs from df2 as column 'b' is of a different type.
1214
+
1215
+ >>> assert_frame_equal(df1, df2)
1216
+ Traceback (most recent call last):
1217
+ ...
1218
+ AssertionError: Attributes of DataFrame.iloc[:, 1] (column name="b") are different
1219
+
1220
+ Attribute "dtype" are different
1221
+ [left]: int64
1222
+ [right]: float64
1223
+
1224
+ Ignore differing dtypes in columns with check_dtype.
1225
+
1226
+ >>> assert_frame_equal(df1, df2, check_dtype=False)
1227
+ """
1228
+ __tracebackhide__ = True
1229
+ _rtol = rtol if rtol is not lib.no_default else 1.0e-5
1230
+ _atol = atol if atol is not lib.no_default else 1.0e-8
1231
+ _check_exact = check_exact if check_exact is not lib.no_default else False
1232
+
1233
+ # instance validation
1234
+ _check_isinstance(left, right, DataFrame)
1235
+
1236
+ if check_frame_type:
1237
+ assert isinstance(left, type(right))
1238
+ # assert_class_equal(left, right, obj=obj)
1239
+
1240
+ # shape comparison
1241
+ if left.shape != right.shape:
1242
+ raise_assert_detail(
1243
+ obj, f"{obj} shape mismatch", f"{repr(left.shape)}", f"{repr(right.shape)}"
1244
+ )
1245
+
1246
+ if check_flags:
1247
+ assert left.flags == right.flags, f"{repr(left.flags)} != {repr(right.flags)}"
1248
+
1249
+ # index comparison
1250
+ assert_index_equal(
1251
+ left.index,
1252
+ right.index,
1253
+ exact=check_index_type,
1254
+ check_names=check_names,
1255
+ check_exact=_check_exact,
1256
+ check_categorical=check_categorical,
1257
+ check_order=not check_like,
1258
+ rtol=_rtol,
1259
+ atol=_atol,
1260
+ obj=f"{obj}.index",
1261
+ )
1262
+
1263
+ # column comparison
1264
+ assert_index_equal(
1265
+ left.columns,
1266
+ right.columns,
1267
+ exact=check_column_type,
1268
+ check_names=check_names,
1269
+ check_exact=_check_exact,
1270
+ check_categorical=check_categorical,
1271
+ check_order=not check_like,
1272
+ rtol=_rtol,
1273
+ atol=_atol,
1274
+ obj=f"{obj}.columns",
1275
+ )
1276
+
1277
+ if check_like:
1278
+ left = left.reindex_like(right)
1279
+
1280
+ # compare by blocks
1281
+ if by_blocks:
1282
+ rblocks = right._to_dict_of_blocks()
1283
+ lblocks = left._to_dict_of_blocks()
1284
+ for dtype in list(set(list(lblocks.keys()) + list(rblocks.keys()))):
1285
+ assert dtype in lblocks
1286
+ assert dtype in rblocks
1287
+ assert_frame_equal(
1288
+ lblocks[dtype], rblocks[dtype], check_dtype=check_dtype, obj=obj
1289
+ )
1290
+
1291
+ # compare by columns
1292
+ else:
1293
+ for i, col in enumerate(left.columns):
1294
+ # We have already checked that columns match, so we can do
1295
+ # fast location-based lookups
1296
+ lcol = left._ixs(i, axis=1)
1297
+ rcol = right._ixs(i, axis=1)
1298
+
1299
+ # GH #38183
1300
+ # use check_index=False, because we do not want to run
1301
+ # assert_index_equal for each column,
1302
+ # as we already checked it for the whole dataframe before.
1303
+ assert_series_equal(
1304
+ lcol,
1305
+ rcol,
1306
+ check_dtype=check_dtype,
1307
+ check_index_type=check_index_type,
1308
+ check_exact=check_exact,
1309
+ check_names=check_names,
1310
+ check_datetimelike_compat=check_datetimelike_compat,
1311
+ check_categorical=check_categorical,
1312
+ check_freq=check_freq,
1313
+ obj=f'{obj}.iloc[:, {i}] (column name="{col}")',
1314
+ rtol=rtol,
1315
+ atol=atol,
1316
+ check_index=False,
1317
+ check_flags=False,
1318
+ )
1319
+
1320
+
1321
+ def assert_equal(left, right, **kwargs) -> None:
1322
+ """
1323
+ Wrapper for tm.assert_*_equal to dispatch to the appropriate test function.
1324
+
1325
+ Parameters
1326
+ ----------
1327
+ left, right : Index, Series, DataFrame, ExtensionArray, or np.ndarray
1328
+ The two items to be compared.
1329
+ **kwargs
1330
+ All keyword arguments are passed through to the underlying assert method.
1331
+ """
1332
+ __tracebackhide__ = True
1333
+
1334
+ if isinstance(left, Index):
1335
+ assert_index_equal(left, right, **kwargs)
1336
+ if isinstance(left, (DatetimeIndex, TimedeltaIndex)):
1337
+ assert left.freq == right.freq, (left.freq, right.freq)
1338
+ elif isinstance(left, Series):
1339
+ assert_series_equal(left, right, **kwargs)
1340
+ elif isinstance(left, DataFrame):
1341
+ assert_frame_equal(left, right, **kwargs)
1342
+ elif isinstance(left, IntervalArray):
1343
+ assert_interval_array_equal(left, right, **kwargs)
1344
+ elif isinstance(left, PeriodArray):
1345
+ assert_period_array_equal(left, right, **kwargs)
1346
+ elif isinstance(left, DatetimeArray):
1347
+ assert_datetime_array_equal(left, right, **kwargs)
1348
+ elif isinstance(left, TimedeltaArray):
1349
+ assert_timedelta_array_equal(left, right, **kwargs)
1350
+ elif isinstance(left, ExtensionArray):
1351
+ assert_extension_array_equal(left, right, **kwargs)
1352
+ elif isinstance(left, np.ndarray):
1353
+ assert_numpy_array_equal(left, right, **kwargs)
1354
+ elif isinstance(left, str):
1355
+ assert kwargs == {}
1356
+ assert left == right
1357
+ else:
1358
+ assert kwargs == {}
1359
+ assert_almost_equal(left, right)
1360
+
1361
+
1362
+ def assert_sp_array_equal(left, right) -> None:
1363
+ """
1364
+ Check that the left and right SparseArray are equal.
1365
+
1366
+ Parameters
1367
+ ----------
1368
+ left : SparseArray
1369
+ right : SparseArray
1370
+ """
1371
+ _check_isinstance(left, right, pd.arrays.SparseArray)
1372
+
1373
+ assert_numpy_array_equal(left.sp_values, right.sp_values)
1374
+
1375
+ # SparseIndex comparison
1376
+ assert isinstance(left.sp_index, SparseIndex)
1377
+ assert isinstance(right.sp_index, SparseIndex)
1378
+
1379
+ left_index = left.sp_index
1380
+ right_index = right.sp_index
1381
+
1382
+ if not left_index.equals(right_index):
1383
+ raise_assert_detail(
1384
+ "SparseArray.index", "index are not equal", left_index, right_index
1385
+ )
1386
+ else:
1387
+ # Just ensure a
1388
+ pass
1389
+
1390
+ assert_attr_equal("fill_value", left, right)
1391
+ assert_attr_equal("dtype", left, right)
1392
+ assert_numpy_array_equal(left.to_dense(), right.to_dense())
1393
+
1394
+
1395
+ def assert_contains_all(iterable, dic) -> None:
1396
+ for k in iterable:
1397
+ assert k in dic, f"Did not contain item: {repr(k)}"
1398
+
1399
+
1400
+ def assert_copy(iter1, iter2, **eql_kwargs) -> None:
1401
+ """
1402
+ iter1, iter2: iterables that produce elements
1403
+ comparable with assert_almost_equal
1404
+
1405
+ Checks that the elements are equal, but not
1406
+ the same object. (Does not check that items
1407
+ in sequences are also not the same object)
1408
+ """
1409
+ for elem1, elem2 in zip(iter1, iter2):
1410
+ assert_almost_equal(elem1, elem2, **eql_kwargs)
1411
+ msg = (
1412
+ f"Expected object {repr(type(elem1))} and object {repr(type(elem2))} to be "
1413
+ "different objects, but they were the same object."
1414
+ )
1415
+ assert elem1 is not elem2, msg
1416
+
1417
+
1418
+ def is_extension_array_dtype_and_needs_i8_conversion(
1419
+ left_dtype: DtypeObj, right_dtype: DtypeObj
1420
+ ) -> bool:
1421
+ """
1422
+ Checks that we have the combination of an ExtensionArraydtype and
1423
+ a dtype that should be converted to int64
1424
+
1425
+ Returns
1426
+ -------
1427
+ bool
1428
+
1429
+ Related to issue #37609
1430
+ """
1431
+ return isinstance(left_dtype, ExtensionDtype) and needs_i8_conversion(right_dtype)
1432
+
1433
+
1434
+ def assert_indexing_slices_equivalent(ser: Series, l_slc: slice, i_slc: slice) -> None:
1435
+ """
1436
+ Check that ser.iloc[i_slc] matches ser.loc[l_slc] and, if applicable,
1437
+ ser[l_slc].
1438
+ """
1439
+ expected = ser.iloc[i_slc]
1440
+
1441
+ assert_series_equal(ser.loc[l_slc], expected)
1442
+
1443
+ if not is_integer_dtype(ser.index):
1444
+ # For integer indices, .loc and plain getitem are position-based.
1445
+ assert_series_equal(ser[l_slc], expected)
1446
+
1447
+
1448
+ def assert_metadata_equivalent(
1449
+ left: DataFrame | Series, right: DataFrame | Series | None = None
1450
+ ) -> None:
1451
+ """
1452
+ Check that ._metadata attributes are equivalent.
1453
+ """
1454
+ for attr in left._metadata:
1455
+ val = getattr(left, attr, None)
1456
+ if right is None:
1457
+ assert val is None
1458
+ else:
1459
+ assert val == getattr(right, attr, None)
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/compat.py ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Helpers for sharing tests between DataFrame/Series
3
+ """
4
+ from __future__ import annotations
5
+
6
+ from typing import TYPE_CHECKING
7
+
8
+ from pandas import DataFrame
9
+
10
+ if TYPE_CHECKING:
11
+ from pandas._typing import DtypeObj
12
+
13
+
14
+ def get_dtype(obj) -> DtypeObj:
15
+ if isinstance(obj, DataFrame):
16
+ # Note: we are assuming only one column
17
+ return obj.dtypes.iat[0]
18
+ else:
19
+ return obj.dtype
20
+
21
+
22
+ def get_obj(df: DataFrame, klass):
23
+ """
24
+ For sharing tests using frame_or_series, either return the DataFrame
25
+ unchanged or return it's first column as a Series.
26
+ """
27
+ if klass is DataFrame:
28
+ return df
29
+ return df._ixs(0, axis=1)
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/_testing/contexts.py ADDED
@@ -0,0 +1,261 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from __future__ import annotations
2
+
3
+ from contextlib import contextmanager
4
+ import os
5
+ from pathlib import Path
6
+ import tempfile
7
+ from typing import (
8
+ IO,
9
+ TYPE_CHECKING,
10
+ Any,
11
+ )
12
+ import uuid
13
+
14
+ from pandas._config import using_copy_on_write
15
+
16
+ from pandas.compat import (
17
+ PYPY,
18
+ WARNING_CHECK_DISABLED,
19
+ )
20
+ from pandas.errors import ChainedAssignmentError
21
+
22
+ from pandas import set_option
23
+
24
+ from pandas.io.common import get_handle
25
+
26
+ if TYPE_CHECKING:
27
+ from collections.abc import Generator
28
+
29
+ from pandas._typing import (
30
+ BaseBuffer,
31
+ CompressionOptions,
32
+ FilePath,
33
+ )
34
+
35
+
36
+ @contextmanager
37
+ def decompress_file(
38
+ path: FilePath | BaseBuffer, compression: CompressionOptions
39
+ ) -> Generator[IO[bytes], None, None]:
40
+ """
41
+ Open a compressed file and return a file object.
42
+
43
+ Parameters
44
+ ----------
45
+ path : str
46
+ The path where the file is read from.
47
+
48
+ compression : {'gzip', 'bz2', 'zip', 'xz', 'zstd', None}
49
+ Name of the decompression to use
50
+
51
+ Returns
52
+ -------
53
+ file object
54
+ """
55
+ with get_handle(path, "rb", compression=compression, is_text=False) as handle:
56
+ yield handle.handle
57
+
58
+
59
+ @contextmanager
60
+ def set_timezone(tz: str) -> Generator[None, None, None]:
61
+ """
62
+ Context manager for temporarily setting a timezone.
63
+
64
+ Parameters
65
+ ----------
66
+ tz : str
67
+ A string representing a valid timezone.
68
+
69
+ Examples
70
+ --------
71
+ >>> from datetime import datetime
72
+ >>> from dateutil.tz import tzlocal
73
+ >>> tzlocal().tzname(datetime(2021, 1, 1)) # doctest: +SKIP
74
+ 'IST'
75
+
76
+ >>> with set_timezone('US/Eastern'):
77
+ ... tzlocal().tzname(datetime(2021, 1, 1))
78
+ ...
79
+ 'EST'
80
+ """
81
+ import time
82
+
83
+ def setTZ(tz) -> None:
84
+ if hasattr(time, "tzset"):
85
+ if tz is None:
86
+ try:
87
+ del os.environ["TZ"]
88
+ except KeyError:
89
+ pass
90
+ else:
91
+ os.environ["TZ"] = tz
92
+ time.tzset()
93
+
94
+ orig_tz = os.environ.get("TZ")
95
+ setTZ(tz)
96
+ try:
97
+ yield
98
+ finally:
99
+ setTZ(orig_tz)
100
+
101
+
102
+ @contextmanager
103
+ def ensure_clean(
104
+ filename=None, return_filelike: bool = False, **kwargs: Any
105
+ ) -> Generator[Any, None, None]:
106
+ """
107
+ Gets a temporary path and agrees to remove on close.
108
+
109
+ This implementation does not use tempfile.mkstemp to avoid having a file handle.
110
+ If the code using the returned path wants to delete the file itself, windows
111
+ requires that no program has a file handle to it.
112
+
113
+ Parameters
114
+ ----------
115
+ filename : str (optional)
116
+ suffix of the created file.
117
+ return_filelike : bool (default False)
118
+ if True, returns a file-like which is *always* cleaned. Necessary for
119
+ savefig and other functions which want to append extensions.
120
+ **kwargs
121
+ Additional keywords are passed to open().
122
+
123
+ """
124
+ folder = Path(tempfile.gettempdir())
125
+
126
+ if filename is None:
127
+ filename = ""
128
+ filename = str(uuid.uuid4()) + filename
129
+ path = folder / filename
130
+
131
+ path.touch()
132
+
133
+ handle_or_str: str | IO = str(path)
134
+ encoding = kwargs.pop("encoding", None)
135
+ if return_filelike:
136
+ kwargs.setdefault("mode", "w+b")
137
+ if encoding is None and "b" not in kwargs["mode"]:
138
+ encoding = "utf-8"
139
+ handle_or_str = open(path, encoding=encoding, **kwargs)
140
+
141
+ try:
142
+ yield handle_or_str
143
+ finally:
144
+ if not isinstance(handle_or_str, str):
145
+ handle_or_str.close()
146
+ if path.is_file():
147
+ path.unlink()
148
+
149
+
150
+ @contextmanager
151
+ def with_csv_dialect(name: str, **kwargs) -> Generator[None, None, None]:
152
+ """
153
+ Context manager to temporarily register a CSV dialect for parsing CSV.
154
+
155
+ Parameters
156
+ ----------
157
+ name : str
158
+ The name of the dialect.
159
+ kwargs : mapping
160
+ The parameters for the dialect.
161
+
162
+ Raises
163
+ ------
164
+ ValueError : the name of the dialect conflicts with a builtin one.
165
+
166
+ See Also
167
+ --------
168
+ csv : Python's CSV library.
169
+ """
170
+ import csv
171
+
172
+ _BUILTIN_DIALECTS = {"excel", "excel-tab", "unix"}
173
+
174
+ if name in _BUILTIN_DIALECTS:
175
+ raise ValueError("Cannot override builtin dialect.")
176
+
177
+ csv.register_dialect(name, **kwargs)
178
+ try:
179
+ yield
180
+ finally:
181
+ csv.unregister_dialect(name)
182
+
183
+
184
+ @contextmanager
185
+ def use_numexpr(use, min_elements=None) -> Generator[None, None, None]:
186
+ from pandas.core.computation import expressions as expr
187
+
188
+ if min_elements is None:
189
+ min_elements = expr._MIN_ELEMENTS
190
+
191
+ olduse = expr.USE_NUMEXPR
192
+ oldmin = expr._MIN_ELEMENTS
193
+ set_option("compute.use_numexpr", use)
194
+ expr._MIN_ELEMENTS = min_elements
195
+ try:
196
+ yield
197
+ finally:
198
+ expr._MIN_ELEMENTS = oldmin
199
+ set_option("compute.use_numexpr", olduse)
200
+
201
+
202
+ def raises_chained_assignment_error(warn=True, extra_warnings=(), extra_match=()):
203
+ from pandas._testing import assert_produces_warning
204
+
205
+ if not warn:
206
+ from contextlib import nullcontext
207
+
208
+ return nullcontext()
209
+
210
+ if (PYPY or WARNING_CHECK_DISABLED) and not extra_warnings:
211
+ from contextlib import nullcontext
212
+
213
+ return nullcontext()
214
+ elif (PYPY or WARNING_CHECK_DISABLED) and extra_warnings:
215
+ return assert_produces_warning(
216
+ extra_warnings,
217
+ match="|".join(extra_match),
218
+ )
219
+ else:
220
+ if using_copy_on_write():
221
+ warning = ChainedAssignmentError
222
+ match = (
223
+ "A value is trying to be set on a copy of a DataFrame or Series "
224
+ "through chained assignment"
225
+ )
226
+ else:
227
+ warning = FutureWarning # type: ignore[assignment]
228
+ # TODO update match
229
+ match = "ChainedAssignmentError"
230
+ if extra_warnings:
231
+ warning = (warning, *extra_warnings) # type: ignore[assignment]
232
+ return assert_produces_warning(
233
+ warning,
234
+ match="|".join((match, *extra_match)),
235
+ )
236
+
237
+
238
+ def assert_cow_warning(warn=True, match=None, **kwargs):
239
+ """
240
+ Assert that a warning is raised in the CoW warning mode.
241
+
242
+ Parameters
243
+ ----------
244
+ warn : bool, default True
245
+ By default, check that a warning is raised. Can be turned off by passing False.
246
+ match : str
247
+ The warning message to match against, if different from the default.
248
+ kwargs
249
+ Passed through to assert_produces_warning
250
+ """
251
+ from pandas._testing import assert_produces_warning
252
+
253
+ if not warn or WARNING_CHECK_DISABLED:
254
+ from contextlib import nullcontext
255
+
256
+ return nullcontext()
257
+
258
+ if not match:
259
+ match = "Setting a value on a view"
260
+
261
+ return assert_produces_warning(FutureWarning, match=match, **kwargs)
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/core/arrays/__init__.py ADDED
@@ -0,0 +1,43 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from pandas.core.arrays.arrow import ArrowExtensionArray
2
+ from pandas.core.arrays.base import (
3
+ ExtensionArray,
4
+ ExtensionOpsMixin,
5
+ ExtensionScalarOpsMixin,
6
+ )
7
+ from pandas.core.arrays.boolean import BooleanArray
8
+ from pandas.core.arrays.categorical import Categorical
9
+ from pandas.core.arrays.datetimes import DatetimeArray
10
+ from pandas.core.arrays.floating import FloatingArray
11
+ from pandas.core.arrays.integer import IntegerArray
12
+ from pandas.core.arrays.interval import IntervalArray
13
+ from pandas.core.arrays.masked import BaseMaskedArray
14
+ from pandas.core.arrays.numpy_ import NumpyExtensionArray
15
+ from pandas.core.arrays.period import (
16
+ PeriodArray,
17
+ period_array,
18
+ )
19
+ from pandas.core.arrays.sparse import SparseArray
20
+ from pandas.core.arrays.string_ import StringArray
21
+ from pandas.core.arrays.string_arrow import ArrowStringArray
22
+ from pandas.core.arrays.timedeltas import TimedeltaArray
23
+
24
+ __all__ = [
25
+ "ArrowExtensionArray",
26
+ "ExtensionArray",
27
+ "ExtensionOpsMixin",
28
+ "ExtensionScalarOpsMixin",
29
+ "ArrowStringArray",
30
+ "BaseMaskedArray",
31
+ "BooleanArray",
32
+ "Categorical",
33
+ "DatetimeArray",
34
+ "FloatingArray",
35
+ "IntegerArray",
36
+ "IntervalArray",
37
+ "NumpyExtensionArray",
38
+ "PeriodArray",
39
+ "period_array",
40
+ "SparseArray",
41
+ "StringArray",
42
+ "TimedeltaArray",
43
+ ]
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/core/arrays/__pycache__/__init__.cpython-310.pyc ADDED
Binary file (1.4 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/core/arrays/__pycache__/_arrow_string_mixins.cpython-310.pyc ADDED
Binary file (12 kB). View file
 
Scripts_Climate_n_LAI_to_Yield/.venv/lib/python3.10/site-packages/pandas/core/arrays/__pycache__/_mixins.cpython-310.pyc ADDED
Binary file (14.3 kB). View file
 
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