Datasets:
Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,131 @@
|
|
| 1 |
-
---
|
| 2 |
-
license:
|
| 3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: pddl
|
| 3 |
+
license_name: physionet-credentialed-health-data-license-1.5.0
|
| 4 |
+
license_link: https://physionet.org/content/mimiciv/view-license/3.1/
|
| 5 |
+
language:
|
| 6 |
+
- en
|
| 7 |
+
tags:
|
| 8 |
+
- medical
|
| 9 |
+
- clinical
|
| 10 |
+
- ecg
|
| 11 |
+
- ehr
|
| 12 |
+
- multimodal
|
| 13 |
+
- question-answering
|
| 14 |
+
- prognosis
|
| 15 |
+
- mimic-iv
|
| 16 |
+
task_categories:
|
| 17 |
+
- question-answering
|
| 18 |
+
size_categories:
|
| 19 |
+
- 100K<n<1M
|
| 20 |
+
---
|
| 21 |
+
|
| 22 |
+
# UniPACT-MDS-ED Prompted Dataset
|
| 23 |
+
|
| 24 |
+

|
| 25 |
+

|
| 26 |
+

|
| 27 |
+

|
| 28 |
+
|
| 29 |
+

|
| 30 |
+
|
| 31 |
+
A multimodal prompt-formatted version of the **MDS-ED** prognostic benchmark (built on MIMIC-IV-ECG + MIMIC-IV), used to train and evaluate **UniPACT**. Each example pairs a raw 12-lead ECG waveform with a natural-language prompt that textualizes structured EHR (demographics, biometrics, vital signs) plus a binary clinical question (Yes/No).
|
| 32 |
+
|
| 33 |
+
📄 **Paper:** Tang, Xia, Lu, Saeed. *UniPACT: A Multimodal Framework for Prognostic Question Answering on Raw ECG and Structured EHR.* ICASSP 2026 ([arXiv:2601.17916](https://arxiv.org/abs/2601.17916) · [IEEE Xplore](https://ieeexplore.ieee.org/document/11461333)) — read this for architecture, training recipe, ablations, and full results.
|
| 34 |
+
|
| 35 |
+
## 🔑 Access
|
| 36 |
+
|
| 37 |
+
This dataset inherits the **PhysioNet Credentialed Health Data License** from MIMIC-IV. Before you can download:
|
| 38 |
+
|
| 39 |
+
1. Create a [PhysioNet](https://physionet.org/) account
|
| 40 |
+
2. Complete the required CITI "Data or Specimens Only Research" training
|
| 41 |
+
3. Sign the MIMIC-IV data use agreement
|
| 42 |
+
|
| 43 |
+
Without credentialing, the files will not be accessible.
|
| 44 |
+
|
| 45 |
+
## 📊 Task coverage
|
| 46 |
+
|
| 47 |
+
The dataset spans **1443 binary prognostic sub-tasks** across four families:
|
| 48 |
+
|
| 49 |
+
| Family | Sub-tasks | Description |
|
| 50 |
+
|---|---:|---|
|
| 51 |
+
| Diagnosis | 1428 | Disease-level binary diagnosis classes |
|
| 52 |
+
| Deterioration | 6 | Acute clinical deterioration outcomes |
|
| 53 |
+
| ICU admission | 2 | ICU-related admission outcomes |
|
| 54 |
+
| Mortality | 7 | Mortality at multiple time horizons |
|
| 55 |
+
|
| 56 |
+
Splits follow the official MDS-ED train / validation / test partition.
|
| 57 |
+
|
| 58 |
+
## 🧪 Examples
|
| 59 |
+
|
| 60 |
+
Each row contains a raw ECG tensor (`(5000, 12)` float array · 10 s @ 500 Hz · 12 leads), a textualized EHR prompt, a binary clinical question, and a Yes/No label. One real sample from each task family:
|
| 61 |
+
|
| 62 |
+
**Deterioration** — `deterioration_severe_hypoxemia_362`
|
| 63 |
+
```text
|
| 64 |
+
ECG: …/p16463772/s48979490/48979490
|
| 65 |
+
EHR: 54 y/o BLACK AFRICAN AMERICAN female; BMI 29.8, weight 76.2;
|
| 66 |
+
temp 36.4, HR 60, RR 16.5, SpO₂ 100, BP 153/94, acuity 2.0.
|
| 67 |
+
Q: Will the patient "experience severe hypoxemia"?
|
| 68 |
+
A: Yes
|
| 69 |
+
```
|
| 70 |
+
|
| 71 |
+
**ICU admission** — `deterioration_icu_24h_7`
|
| 72 |
+
```text
|
| 73 |
+
ECG: …/p18585855/s44869927/44869927
|
| 74 |
+
EHR: 54 y/o WHITE female; BMI 28.9, weight 71.7, height 157.5;
|
| 75 |
+
temp 36.8, HR 77.5, RR 16.5, SpO₂ 99.5, BP 115.5/66.5, acuity 3.0.
|
| 76 |
+
Q: Will the patient "require ICU admission within the next 24 hours"?
|
| 77 |
+
A: Yes
|
| 78 |
+
```
|
| 79 |
+
|
| 80 |
+
**Mortality** — `deterioration_mortality_1d_3`
|
| 81 |
+
```text
|
| 82 |
+
ECG: …/p13953606/s48605173/48605173
|
| 83 |
+
EHR: 61 y/o WHITE male; BMI 28.7, weight 104.1, height 190.5;
|
| 84 |
+
temp 36.3, HR 101, RR 20, SpO₂ 99, BP 156/81, acuity 1.0.
|
| 85 |
+
Q: Will the patient "die within 24 hours"?
|
| 86 |
+
A: No
|
| 87 |
+
```
|
| 88 |
+
|
| 89 |
+
**Diagnosis** — `diagnoses_i10_0`
|
| 90 |
+
```text
|
| 91 |
+
ECG: …/p11922120/s41055417/41055417
|
| 92 |
+
EHR: 66 y/o WHITE male; BMI 31.7, weight 118.1;
|
| 93 |
+
temp 36.3, HR 81, RR 18, SpO₂ 99, BP 141/73, acuity 2.0.
|
| 94 |
+
Q: Will the patient be diagnosed with "Essential (primary) hypertension"?
|
| 95 |
+
A: No
|
| 96 |
+
```
|
| 97 |
+
|
| 98 |
+
---
|
| 99 |
+
|
| 100 |
+
## Reference
|
| 101 |
+
|
| 102 |
+
<details>
|
| 103 |
+
<summary><b>Citation</b></summary>
|
| 104 |
+
|
| 105 |
+
```bibtex
|
| 106 |
+
@INPROCEEDINGS{11461333,
|
| 107 |
+
author = {Tang, Jialu and Xia, Tong and Lu, Yuan and Saeed, Aaqib},
|
| 108 |
+
booktitle = {ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
|
| 109 |
+
title = {UniPACT: A Multimodal Framework for Prognostic Question Answering on Raw ECG and Structured EHR},
|
| 110 |
+
year = {2026},
|
| 111 |
+
pages = {22537-22541},
|
| 112 |
+
doi = {10.1109/ICASSP55912.2026.11461333}
|
| 113 |
+
}
|
| 114 |
+
```
|
| 115 |
+
|
| 116 |
+
Please also cite the underlying [MDS-ED benchmark](https://arxiv.org/abs/2407.17856) and [MIMIC-IV](https://physionet.org/content/mimiciv/) per their respective requirements.
|
| 117 |
+
|
| 118 |
+
</details>
|
| 119 |
+
|
| 120 |
+
<details>
|
| 121 |
+
<summary><b>Source data & construction</b></summary>
|
| 122 |
+
|
| 123 |
+
- **Source benchmark:** [MDS-ED](https://arxiv.org/abs/2407.17856) (Alcaraz et al., 2024)
|
| 124 |
+
- **Underlying clinical data:** [MIMIC-IV-ECG](https://physionet.org/content/mimic-iv-ecg/) and [MIMIC-IV](https://physionet.org/content/mimiciv/), collected at Beth Israel Deaconess Medical Center and de-identified under HIPAA Safe Harbor by the MIT Laboratory for Computational Physiology
|
| 125 |
+
- **EHR textualization:** 3 demographic + 3 biometric + 7 vital-parameter fields are inserted into fixed sentence templates
|
| 126 |
+
- **Labels:** derived programmatically from existing structured fields (ICD codes, ICU stay tables, mortality timestamps, MDS-ED deterioration outcomes) — no human re-annotation
|
| 127 |
+
- **ECG:** raw 12-lead waveforms kept in native form for waveform encoders; no conversion to text reports
|
| 128 |
+
|
| 129 |
+
See paper §2 for the full construction pipeline.
|
| 130 |
+
|
| 131 |
+
</details>
|