"""Tests for NegBioDB download utilities.""" from pathlib import Path import pytest from negbiodb.download import ( check_disk_space, load_config, verify_file_exists, ) class TestLoadConfig: def test_load_config_returns_dict(self): cfg = load_config() assert isinstance(cfg, dict) assert "downloads" in cfg def test_config_has_all_sources(self): cfg = load_config() downloads = cfg["downloads"] for source in ["pubchem", "chembl", "bindingdb", "davis"]: assert source in downloads, f"Missing download config: {source}" def test_config_pubchem_has_url(self): cfg = load_config() assert cfg["downloads"]["pubchem"]["url"].startswith("https://") def test_config_davis_has_files(self): cfg = load_config() davis = cfg["downloads"]["davis"] assert "files" in davis assert len(davis["files"]) == 3 class TestDiskSpace: def test_sufficient_space(self, tmp_path): # Current disk should have at least 0.001 GB free check_disk_space(tmp_path, required_gb=0.001) def test_insufficient_space_raises(self, tmp_path): with pytest.raises(ValueError, match="Insufficient disk space"): check_disk_space(tmp_path, required_gb=999999) def test_creates_directory(self, tmp_path): new_dir = tmp_path / "deep" / "nested" / "dir" check_disk_space(new_dir, required_gb=0.001) assert new_dir.exists() class TestFileVerification: def test_verify_existing_file(self, tmp_path): f = tmp_path / "test.txt" f.write_text("hello world") assert verify_file_exists(f) is True def test_verify_missing_file(self, tmp_path): assert verify_file_exists(tmp_path / "nonexistent.txt") is False def test_verify_small_file(self, tmp_path): f = tmp_path / "small.txt" f.write_text("hi") assert verify_file_exists(f, min_bytes=1000) is False def test_verify_file_meets_min_size(self, tmp_path): f = tmp_path / "big.txt" f.write_bytes(b"x" * 1000) assert verify_file_exists(f, min_bytes=1000) is True def test_verify_empty_file(self, tmp_path): f = tmp_path / "empty.txt" f.touch() assert verify_file_exists(f) is True assert verify_file_exists(f, min_bytes=1) is False @pytest.mark.integration class TestDavisDownload: """Integration test — requires network access. Run with: pytest -m integration""" def test_davis_download(self, tmp_path): import pandas as pd from negbiodb.download import download_file_http cfg = load_config() davis = cfg["downloads"]["davis"] base_url = davis["base_url"] # Download only drugs.csv (smallest file) url = f"{base_url}/drugs.csv" dest = tmp_path / "drugs.csv" download_file_http(url, dest, desc="drugs.csv") assert dest.exists() df = pd.read_csv(dest) assert len(df) == 68 assert "Canonical_SMILES" in df.columns