#!/usr/bin/env python """Download hu.MAP 3.0 pair lists. Downloads: - neg_train_ppis.txt (negative training pairs) - neg_test_ppis.txt (negative test pairs) - train_ppis.txt (positive training pairs, reference) - test_ppis.txt (positive test pairs, reference) License: CC0 (Public Domain) """ import argparse from pathlib import Path from negbiodb.download import download_file_http, load_config _PROJECT_ROOT = Path(__file__).resolve().parent.parent def main(): parser = argparse.ArgumentParser(description="Download hu.MAP 3.0 pair data") parser.add_argument( "--dest-dir", type=str, default=None, help="Destination directory (default: from config)", ) args = parser.parse_args() cfg = load_config() humap_cfg = cfg["ppi_domain"]["downloads"]["humap"] dest_dir = Path(args.dest_dir or (_PROJECT_ROOT / humap_cfg["dest_dir"])) base_url = humap_cfg["base_url"].rstrip("/") files = [ humap_cfg["neg_train"], humap_cfg["neg_test"], humap_cfg["pos_train"], humap_cfg["pos_test"], ] for fname in files: url = f"{base_url}/{fname}" download_file_http(url, dest_dir / fname, desc=fname) print(f"\nhu.MAP 3.0 data downloaded to {dest_dir}") if __name__ == "__main__": main()