"""Download Shi & Du 2024 structured p-value datasets from GitHub. Two files: efficacy_results.csv (~119K rows), safety_results.csv (~803K rows). Contains structured p-values, effect sizes, and safety outcomes from clinical trials. Source: Shi & Du 2024 (Scientific Data) License: CC0 (public domain) Usage: python scripts_ct/download_shi_du.py """ from pathlib import Path from negbiodb.download import download_file_http, load_config, verify_file_exists def main(): cfg = load_config() dl = cfg["ct_domain"]["downloads"]["shi_du"] print("=== Shi & Du 2024 Download ===") for key, url_key, dest_key, desc in [ ("efficacy", "efficacy_url", "efficacy_dest", "Efficacy results"), ("safety", "safety_url", "safety_dest", "Safety results"), ]: url = dl[url_key] dest = Path(dl[dest_key]) print(f"\n--- {desc} ---") print(f"Dest: {dest}") download_file_http(url, dest, desc=desc) if not verify_file_exists(dest, min_bytes=1000): raise ValueError(f"Shi & Du {key} file too small or missing: {dest}") size_mb = dest.stat().st_size / (1024**2) print(f"Downloaded: {dest} ({size_mb:.1f} MB)") print("\nShi & Du download complete.") if __name__ == "__main__": main()