import numpy as np import pytest import tiledb from .common import DiskTestCase, assert_captured class FilestoreTest(DiskTestCase): @pytest.fixture def text_fname(self): path = self.path("text_fname") vfs = tiledb.VFS() vfs.touch(path) with vfs.open(path, "wb") as fio: fio.write(b"Simple text file.\n") fio.write(b"With two lines.") return path def test_buffer(self, capfd): path = self.path("test_buffer") data = b"buffer" fs = tiledb.Filestore(path) with self.assertRaises(tiledb.TileDBError): fs.write(data) schema = tiledb.ArraySchema.from_file() tiledb.Array.create(path, schema) assert schema.attr(0).name == "contents" assert schema.attr(0).dtype == np.bytes_ schema.attr(0).dump() assert_captured(capfd, "Type: BLOB") fs = tiledb.Filestore(path) fs.write(data) assert bytes(data) == fs.read() def test_small_buffer(self, capfd): path = self.path("test_small_buffer") # create a 4 byte array data = b"abcd" fs = tiledb.Filestore(path) with self.assertRaises(tiledb.TileDBError): fs.write(data) schema = tiledb.ArraySchema.from_file() tiledb.Array.create(path, schema) assert schema.attr(0).name == "contents" assert schema.attr(0).dtype == np.bytes_ schema.attr(0).dump() assert_captured(capfd, "Type: BLOB") fs = tiledb.Filestore(path) fs.write(data) assert data[3:4] == fs.read(offset=3, size=1) def test_uri(self, text_fname): path = self.path("test_uri") schema = tiledb.ArraySchema.from_file(text_fname) tiledb.Array.create(path, schema) fs = tiledb.Filestore(path) tiledb.Filestore.copy_from(path, text_fname) with open(text_fname, "rb") as text: data = text.read() assert data == fs.read(0, len(data)) assert len(fs) == len(data) def test_multiple_writes(self): path = self.path("test_buffer") schema = tiledb.ArraySchema.from_file() tiledb.Array.create(path, schema) fs = tiledb.Filestore(path) for i in range(1, 4): fs.write(("x" * i).encode()) assert fs.read() == ("x" * i).encode() timestamps = [t[0] for t in tiledb.array_fragments(path).timestamp_range] for i, ts in enumerate(timestamps, start=1): with tiledb.open(path, timestamp=ts) as A: assert A.meta["file_size"] == i