# %% import numpy as np import tiledb from .common import DiskTestCase, assert_array_equal, assert_equal class DomainIndexingSparseTest(DiskTestCase): def test_int_domain_indexing(self): path = self.path("int_domain_indexing") dom = tiledb.Domain( tiledb.Dim(name="x", domain=(-10, 10), tile=1, dtype=np.int64) ) schema = tiledb.ArraySchema( domain=dom, sparse=True, attrs=[tiledb.Attr(name="a", dtype=np.float64)] ) tiledb.SparseArray.create(path, schema) X = np.arange(-10, 11, step=1) val = np.random.rand(len(X)) with tiledb.SparseArray(path, mode="w") as A: A[X] = val with tiledb.SparseArray(path) as A: assert_array_equal(A.domain_index[X[0]]["a"], val[0]) assert_array_equal(A.domain_index[X[-1]]["a"], val[-1]) assert_array_equal(A.domain_index[X[0] : X[-1]]["a"], val[:]) # sanity check assert_array_equal(A.domain_index[X[0] : X[-1]]["x"], X[:]) def test_fp_domain_indexing(self): array_path = self.path("test_domain_idx") # test case from https://github.com/TileDB-Inc/TileDB-Py/issues/201 tile = 1 dom = tiledb.Domain( tiledb.Dim(name="x", domain=(-89.75, 89.75), tile=tile, dtype=np.float64), tiledb.Dim(name="y", domain=(-179.75, 179.75), tile=tile, dtype=np.float64), tiledb.Dim(name="z", domain=(157498, 157863), tile=tile, dtype=np.float64), ) schema = tiledb.ArraySchema( domain=dom, sparse=True, attrs=[tiledb.Attr(name="data", dtype=np.float64)] ) tiledb.SparseArray.create(array_path, schema) # fake data X = np.linspace(-89.75, 89.75, 359) Y = np.linspace(-179.75, 179.75, 359) Z = np.linspace(157498, 157857, 359) # data = np.random.rand(*map(lambda x: x[0], (X.shape, Y.shape, Z.shape))) data = np.random.rand(X.shape[0]) with tiledb.SparseArray(array_path, mode="w") as A: A[X, Y, Z] = data with tiledb.SparseArray(array_path) as A: # check direct slicing assert_array_equal(A.domain_index[X[0], Y[0], Z[0]]["data"], data[0]) # check small slice ranges tmp = A.domain_index[ X[0] : np.nextafter(X[0], 0), Y[0] : np.nextafter(Y[0], 0), Z[0] : np.nextafter(Z[0], Z[0] + 1), ] assert_array_equal(tmp["data"], data[0]) # check slicing last element tmp = A.domain_index[X[-1], Y[-1], Z[-1]] assert_array_equal(tmp["data"], data[-1]) # check slice range multiple components tmp = A.domain_index[X[1] : X[2], Y[1] : Y[2], Z[1] : Z[2]] assert_array_equal(tmp["data"], data[1:3]) # check an interior point coords = X[145], Y[145], Z[145] tmp = A.domain_index[coords] assert_array_equal(tmp["x"], X[145]) assert_array_equal(tmp["data"], data[145]) # check entire domain tmp = A.domain_index[X[0] : X[-1], Y[0] : Y[-1], Z[0] : Z[-1]] assert_array_equal(tmp["data"], data[:]) # check entire domain # TODO uncomment if vectorized indexing is available # coords = np.array([X,Y,Z]).transpose().flatten() # tmp = A.domain_index[X,Y,Z] # assert_array_equal( # tmp['data'], # data[:] # ) def test_fp_domain_count(self): array_path = self.path("test_domain_count") tile = 1 dom = tiledb.Domain( tiledb.Dim(name="x", domain=(0.0, 2.0), tile=tile, dtype=np.float64), tiledb.Dim(name="y", domain=(0.0, 2.0), tile=tile, dtype=np.float64), ) schema = tiledb.ArraySchema( domain=dom, sparse=True, attrs=[tiledb.Attr(name="data", dtype=np.float64)] ) tiledb.SparseArray.create(array_path, schema) # fake data X = [1.0] Y = [1.0] data = [1.0] with tiledb.SparseArray(array_path, mode="w") as A: A[X, Y] = data with tiledb.SparseArray(array_path) as A: # check direct slicing assert_array_equal(A.domain_index[X[0], Y[0]]["data"], data[0]) # check counting by slice assert_equal(A.domain_index[0:2.0, 0:1.0]["x"].shape[0], 1) assert_equal(A.domain_index[0:2.0, 0:1.0]["y"].shape[0], 1) assert_equal(A.domain_index[0:2.0, np.nextafter(1.0, 2.0)]["x"].shape[0], 0) assert_equal(A.domain_index[0:2.0, np.nextafter(1.0, 2.0)]["y"].shape[0], 0) class DomainIndexingDenseTest(DiskTestCase): def test_int_domain_indexing(self): path = self.path("dense_int_domain_indexing") dom = tiledb.Domain( tiledb.Dim(name="x", domain=(0, 10), tile=1, dtype=np.int64) ) schema = tiledb.ArraySchema( domain=dom, sparse=False, attrs=[tiledb.Attr(name="a", dtype=np.float64)] ) tiledb.DenseArray.create(path, schema) X = np.arange(0, 11, step=1) val = np.random.rand(len(X)) with tiledb.DenseArray(path, mode="w") as A: A[:] = val with tiledb.DenseArray(path) as A: assert_array_equal(A.domain_index[X[0]]["a"], val[0]) assert_array_equal(A.domain_index[X[-1]]["a"], val[-1]) assert_array_equal(A.domain_index[X[0] : X[-1]]["a"], val[:]) # sanity check assert_array_equal(A.domain_index[X[0] : X[-1]]["x"], X[:])