import xml.etree.ElementTree import numpy as np import pytest import tiledb from .common import DiskTestCase, assert_captured class DomainTest(DiskTestCase): def test_domain(self, capfd): dims = [ tiledb.Dim("d1", (1, 4), 2, dtype="u8"), tiledb.Dim("d2", (1, 4), 2, dtype="u8"), ] dom = tiledb.Domain(*dims) # check that dumping works dom.dump() assert_captured(capfd, "Name: d1") self.assertEqual(dom.ndim, 2) self.assertEqual(dom.dtype, np.dtype("uint64")) self.assertEqual(dom.shape, (4, 4)) # check that we can iterate over the dimensions dim_names = [dim.name for dim in dom] self.assertEqual(["d1", "d2"], dim_names) # check that we can access dim by name dim_d1 = dom.dim("d1") self.assertEqual(dim_d1, dom.dim(0)) # check that we can construct directly from a List[Dim] dom2 = tiledb.Domain(dims) self.assertEqual(dom, dom2) try: assert xml.etree.ElementTree.fromstring(dom._repr_html_()) is not None except: pytest.fail(f"Could not parse dom._repr_html_(). Saw {dom._repr_html_()}") def test_datetime_domain(self): dim = tiledb.Dim( name="d1", domain=(np.datetime64("2010-01-01"), np.datetime64("2020-01-01")), tile=np.timedelta64(20, "D"), dtype=np.datetime64("", "D"), ) dom = tiledb.Domain(dim) self.assertEqual(dom, dom) self.assertEqual(dom.dtype, np.datetime64("", "D")) def test_domain_mixed_names_error(self): with self.assertRaises(tiledb.TileDBError): tiledb.Domain( tiledb.Dim("d1", (1, 4), 2, dtype="u8"), tiledb.Dim("__dim_0", (1, 4), 2, dtype="u8"), ) def test_ascii_domain(self, capfd): path = self.path("test_ascii_domain") dim = tiledb.Dim(name="d", dtype="ascii") assert dim.dtype == np.bytes_ dom = tiledb.Domain(dim) self.assertEqual(dom, dom) dom.dump() assert_captured(capfd, "Type: STRING_ASCII") att = tiledb.Attr(name="a", dtype=np.int64) schema = tiledb.ArraySchema(domain=dom, attrs=(att,), sparse=True) tiledb.SparseArray.create(path, schema) ascii_coords = ["a", "b", "c", "ABC"] unicode_coords = ["±", "×", "÷", "√"] data = [1, 2, 3, 4] with tiledb.open(path, "w") as A: with self.assertRaises(tiledb.TileDBError): A[unicode_coords] = data A[ascii_coords] = data