import tempfile import numpy as np import tiledb class MultiIndex: params = [10, 100, 1000, 10_000, 100_000] def setup(self, _): self.uri = tempfile.mkdtemp() self.dmin = -10_000_000 self.dmax = 10_000_000 self.ncoords = 3_000_000 schema = tiledb.ArraySchema( tiledb.Domain([tiledb.Dim(dtype=np.int64, domain=(self.dmin, self.dmax))]), attrs=[ tiledb.Attr(name="", dtype="float64", var=False, nullable=False), ], cell_order="row-major", tile_order="row-major", capacity=1000, sparse=True, ) tiledb.Array.create(self.uri, schema) # use `choice` here because randint doesn't support non-replacement self.coords = np.random.choice( np.arange(self.dmin, self.dmax + 1), size=self.ncoords, replace=False ) with tiledb.open(self.uri, "w") as A: A[self.coords] = np.random.rand(self.ncoords) def time_multiindex_read(self, coords_count): coords = np.random.choice(self.coords, size=coords_count, replace=False) with tiledb.open(self.uri) as A: A.multi_index[list(coords)]