#include #include #include #include #include #include "util.h" #include // C++ #if !defined(NDEBUG) // #include "debug.cc" #endif namespace tiledbpy { using namespace std; using namespace tiledb; namespace py = pybind11; using namespace pybind11::literals; class PyFragmentInfo { private: Context ctx_; unique_ptr fi_; py::object schema_; uint32_t num_fragments_; py::tuple uri_; py::tuple version_; py::tuple nonempty_domain_; py::tuple cell_num_; py::tuple timestamp_range_; py::tuple sparse_; uint32_t unconsolidated_metadata_num_; py::tuple has_consolidated_metadata_; py::tuple to_vacuum_; py::tuple mbrs_; py::tuple array_schema_name_; public: tiledb_ctx_t *c_ctx_; public: PyFragmentInfo() = delete; PyFragmentInfo(const string &uri, py::object schema, py::bool_ include_mbrs, py::object ctx) { schema_ = schema; tiledb_ctx_t *c_ctx_ = (py::capsule)ctx.attr("__capsule__")(); if (c_ctx_ == nullptr) TPY_ERROR_LOC("Invalid context pointer!"); ctx_ = Context(c_ctx_, false); fi_ = unique_ptr(new FragmentInfo(ctx_, uri)); load(); num_fragments_ = fragment_num(); uri_ = fill_uri(); version_ = fill_version(); nonempty_domain_ = fill_non_empty_domain(); cell_num_ = fill_cell_num(); timestamp_range_ = fill_timestamp_range(); sparse_ = fill_sparse(); unconsolidated_metadata_num_ = unconsolidated_metadata_num(); has_consolidated_metadata_ = fill_has_consolidated_metadata(); to_vacuum_ = fill_to_vacuum_uri(); array_schema_name_ = fill_array_schema_name(); if (include_mbrs) mbrs_ = fill_mbr(); close(); } uint32_t get_num_fragments() { return num_fragments_; }; py::tuple get_uri() { return uri_; }; py::tuple get_version() { return version_; }; py::tuple get_nonempty_domain() { return nonempty_domain_; }; py::tuple get_cell_num() { return cell_num_; }; py::tuple get_timestamp_range() { return timestamp_range_; }; py::tuple get_sparse() { return sparse_; }; uint32_t get_unconsolidated_metadata_num() { return unconsolidated_metadata_num_; }; py::tuple get_has_consolidated_metadata() { return has_consolidated_metadata_; }; py::tuple get_to_vacuum() { return to_vacuum_; }; py::tuple get_mbrs() { return mbrs_; }; py::tuple get_array_schema_name() { return array_schema_name_; }; void dump() const { return fi_->dump(stdout); } private: template py::object for_all_fid(T (FragmentInfo::*fn)(uint32_t) const) const { py::list l; uint32_t nfrag = fragment_num(); for (uint32_t i = 0; i < nfrag; ++i) l.append((fi_.get()->*fn)(i)); return py::tuple(l); } void load() const { try { fi_->load(); } catch (TileDBError &e) { TPY_ERROR_LOC(e.what()); } } void close() { fi_.reset(); } py::tuple fill_uri() const { return for_all_fid(&FragmentInfo::fragment_uri); } py::tuple fill_non_empty_domain() const { py::list all_frags; uint32_t nfrag = fragment_num(); for (uint32_t fid = 0; fid < nfrag; ++fid) all_frags.append(fill_non_empty_domain(fid)); return std::move(all_frags); } py::tuple fill_non_empty_domain(uint32_t fid) const { py::list all_dims; int ndim = (schema_.attr("domain").attr("ndim")).cast(); for (int did = 0; did < ndim; ++did) all_dims.append(fill_non_empty_domain(fid, did)); return std::move(all_dims); } template py::tuple fill_non_empty_domain(uint32_t fid, T did) const { py::bool_ isvar = get_dim_isvar(schema_.attr("domain"), did); if (isvar) { pair lims = fi_->non_empty_domain_var(fid, did); return py::make_tuple(lims.first, lims.second); } py::dtype type = get_dim_type(schema_.attr("domain"), did); py::dtype array_type = type.kind() == 'M' ? pybind11::dtype::of() : type; py::array limits = py::array(array_type, 2); py::buffer_info buffer = limits.request(); fi_->get_non_empty_domain(fid, did, buffer.ptr); if (type.kind() == 'M') { auto np = py::module::import("numpy"); auto datetime64 = np.attr("datetime64"); auto datetime_data = np.attr("datetime_data"); uint64_t *dates = static_cast(buffer.ptr); limits = py::make_tuple(datetime64(dates[0], datetime_data(type)), datetime64(dates[1], datetime_data(type))); } return std::move(limits); } py::bool_ get_dim_isvar(py::object dom, uint32_t did) const { // passing templated type "did" to Python function dom.attr("dim") // does not work return (dom.attr("dim")(did).attr("isvar")).cast(); } py::bool_ get_dim_isvar(py::object dom, string did) const { // passing templated type "did" to Python function dom.attr("dim") // does not work return (dom.attr("dim")(did).attr("isvar")).cast(); } py::dtype get_dim_type(py::object dom, uint32_t did) const { // passing templated type "did" to Python function dom.attr("dim") // does not work return (dom.attr("dim")(did).attr("dtype")).cast(); } py::dtype get_dim_type(py::object dom, string did) const { // passing templated type "did" to Python function dom.attr("dim") // does not work return (dom.attr("dim")(did).attr("dtype")).cast(); } py::tuple fill_timestamp_range() const { return for_all_fid(&FragmentInfo::timestamp_range); } uint32_t fragment_num() const { return fi_->fragment_num(); } py::tuple fill_sparse() const { return for_all_fid(&FragmentInfo::sparse); } py::tuple fill_cell_num() const { return for_all_fid(&FragmentInfo::cell_num); } py::tuple fill_version() const { return for_all_fid(&FragmentInfo::version); } py::tuple fill_has_consolidated_metadata() const { return for_all_fid(&FragmentInfo::has_consolidated_metadata); } uint32_t unconsolidated_metadata_num() const { return fi_->unconsolidated_metadata_num(); } uint32_t to_vacuum_num() const { return fi_->to_vacuum_num(); } py::tuple fill_to_vacuum_uri() const { py::list l; uint32_t nfrag = to_vacuum_num(); for (uint32_t i = 0; i < nfrag; ++i) l.append((fi_->to_vacuum_uri(i))); return py::tuple(l); } py::tuple fill_mbr() const { py::list all_frags; uint32_t nfrag = fragment_num(); for (uint32_t fid = 0; fid < nfrag; ++fid) all_frags.append(fill_mbr(fid)); return std::move(all_frags); } py::tuple fill_mbr(uint32_t fid) const { py::list all_mbrs; uint64_t nmbr = fi_->mbr_num(fid); for (uint32_t mid = 0; mid < nmbr; ++mid) all_mbrs.append(fill_mbr(fid, mid)); return std::move(all_mbrs); } py::tuple fill_mbr(uint32_t fid, uint32_t mid) const { py::list all_dims; int ndim = (schema_.attr("domain").attr("ndim")).cast(); for (int did = 0; did < ndim; ++did) all_dims.append(fill_mbr(fid, mid, did)); return std::move(all_dims); } py::tuple fill_mbr(uint32_t fid, uint32_t mid, uint32_t did) const { py::bool_ isvar = get_dim_isvar(schema_.attr("domain"), did); if (isvar) { auto limits = fi_->mbr_var(fid, mid, did); return py::make_tuple(limits.first, limits.second); } py::dtype type = get_dim_type(schema_.attr("domain"), did); py::dtype array_type = type.kind() == 'M' ? pybind11::dtype::of() : type; py::array limits = py::array(array_type, 2); py::buffer_info buffer = limits.request(); fi_->get_mbr(fid, mid, did, buffer.ptr); return std::move(limits); } py::tuple fill_array_schema_name() const { return for_all_fid(&FragmentInfo::array_schema_name); } }; void init_fragment(py::module &m) { py::class_(m, "PyFragmentInfo") .def(py::init()) .def("get_num_fragments", &PyFragmentInfo::get_num_fragments) .def("get_uri", &PyFragmentInfo::get_uri) .def("get_version", &PyFragmentInfo::get_version) .def("get_nonempty_domain", &PyFragmentInfo::get_nonempty_domain) .def("get_cell_num", &PyFragmentInfo::get_cell_num) .def("get_timestamp_range", &PyFragmentInfo::get_timestamp_range) .def("get_sparse", &PyFragmentInfo::get_sparse) .def("get_unconsolidated_metadata_num", &PyFragmentInfo::get_unconsolidated_metadata_num) .def("get_has_consolidated_metadata", &PyFragmentInfo::get_has_consolidated_metadata) .def("get_to_vacuum", &PyFragmentInfo::get_to_vacuum) .def("get_mbrs", &PyFragmentInfo::get_mbrs) .def("get_array_schema_name", &PyFragmentInfo::get_array_schema_name) .def("dump", &PyFragmentInfo::dump); } }; // namespace tiledbpy