#include #include #include #include #include #include #include "common.h" namespace libtiledbcpp { using namespace tiledb; using namespace tiledbpy::common; namespace py = pybind11; class Filestore { public: // TODO this works, but isn't actually in use at the moment. // we are still using tiledb.libtiledb.ArraySchema. when we switch to using // tiledb.cc.ArraySchema, use this function instead. static ArraySchema schema_create(const Context &ctx, const char *uri) { tiledb_array_schema_t *schema; tiledb_filestore_schema_create(ctx.ptr().get(), uri, &schema); return ArraySchema(ctx, py::capsule(schema)); } static void uri_import(const Context &ctx, const char *filestore_array_uri, const char *file_uri, tiledb_mime_type_t mime_type) { ctx.handle_error(tiledb_filestore_uri_import( ctx.ptr().get(), filestore_array_uri, file_uri, mime_type)); } static void uri_export(const Context &ctx, const char *filestore_array_uri, const char *file_uri) { ctx.handle_error(tiledb_filestore_uri_export(ctx.ptr().get(), file_uri, filestore_array_uri)); } static void buffer_import(const Context &ctx, const char *filestore_array_uri, py::buffer buf, tiledb_mime_type_t mime_type) { py::buffer_info buffer = buf.request(); ctx.handle_error( tiledb_filestore_buffer_import(ctx.ptr().get(), filestore_array_uri, buffer.ptr, py::len(buf), mime_type)); } static py::bytes buffer_export(const Context &ctx, const char *filestore_array_uri, size_t offset, size_t size) { py::array data = py::array(py::dtype::of(), size); py::buffer_info buffer = data.request(); ctx.handle_error(tiledb_filestore_buffer_export( ctx.ptr().get(), filestore_array_uri, offset, buffer.ptr, size)); auto np = py::module::import("numpy"); auto to_bytes = np.attr("ndarray").attr("tobytes"); return to_bytes(data); } static size_t size(const Context &ctx, const char *filestore_array_uri) { size_t size; ctx.handle_error( tiledb_filestore_size(ctx.ptr().get(), filestore_array_uri, &size)); return size; } static const char *mime_type_to_str(tiledb_mime_type_t mime_type) { const char *str; tiledb_mime_type_to_str(mime_type, &str); return str; } static tiledb_mime_type_t mime_type_from_str(const char *str) { tiledb_mime_type_t mime_type; tiledb_mime_type_from_str(str, &mime_type); return mime_type; } }; void init_filestore(py::module &m) { py::class_(m, "Filestore") .def_static("_schema_create", &Filestore::schema_create, py::keep_alive<1, 2>()) .def_static("_uri_import", &Filestore::uri_import, py::keep_alive<1, 2>()) .def_static("_uri_export", &Filestore::uri_export, py::keep_alive<1, 2>()) .def_static("_buffer_import", &Filestore::buffer_import, py::keep_alive<1, 2>()) .def_static("_buffer_export", &Filestore::buffer_export, py::keep_alive<1, 2>()) .def_static("_size", &Filestore::size, py::keep_alive<1, 2>()) .def_static("_mime_type_to_str", &Filestore::mime_type_to_str) .def_static("_mime_type_from_str", &Filestore::mime_type_from_str); ; }; }; // namespace libtiledbcpp