# fragment_info.py # # LICENSE # # The MIT License # # Copyright (c) 2020 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # import numpy as np import tiledb array_name = "fragment_info" def create_array(): # The array will be 4x4 with dimensions "rows" and "cols", with domain [1,4] and space tiles 2x2. dom = tiledb.Domain( tiledb.Dim(name="rows", domain=(1, 4), tile=2, dtype=np.int32), tiledb.Dim(name="cols", domain=(1, 4), tile=2, dtype=np.int32), ) # The array will be dense with a single attribute "a" so each (i,j) cell can store an integer. schema = tiledb.ArraySchema( domain=dom, sparse=False, attrs=[tiledb.Attr(name="a", dtype=np.int32)] ) # Create the (empty) array on disk. tiledb.Array.create(array_name, schema) def write_array_1(): with tiledb.open(array_name, mode="w") as A: A[1:3, 1:5] = np.array(([[1, 2, 3, 4], [5, 6, 7, 8]])) def write_array_2(): with tiledb.open(array_name, mode="w") as A: A[2:4, 2:4] = np.array(([[101, 102], [103, 104]])) def write_array_3(): with tiledb.open(array_name, mode="w") as A: A[3:4, 4:5] = np.array(([202])) # Create and write array only if it does not exist if tiledb.object_type(array_name) != "array": create_array() write_array_1() write_array_2() write_array_3() # tiledb.array_fragments() requires TileDB-Py version > 0.8.5 fragments_info = tiledb.array_fragments(array_name) print("====== FRAGMENTS INFO ======") print("array uri: {}".format(fragments_info.array_uri)) print("number of fragments: {}".format(len(fragments_info))) to_vac = fragments_info.to_vacuum print("number of consolidated fragments to vacuum: {}".format(len(to_vac))) print("uris of consolidated fragments to vacuum: {}".format(to_vac)) print(fragments_info.nonempty_domain) print(fragments_info.sparse) for fragment in fragments_info: print() print("===== FRAGMENT NUMBER {} =====".format(fragment.num)) print("fragment uri: {}".format(fragment.uri)) print("is sparse: {}".format(fragment.sparse)) print("cell num: {}".format(fragment.cell_num)) print("has consolidated metadata: {}".format(fragment.has_consolidated_metadata)) print("nonempty domain: {}".format(fragment.nonempty_domain)) print("timestamp range: {}".format(fragment.timestamp_range)) print( "number of unconsolidated metadata: {}".format( fragment.unconsolidated_metadata_num ) ) print("version: {}".format(fragment.version))