# Copyright 2020 MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from abc import ABC, abstractmethod from typing import Sequence, Union import torch from monai.inferers.utils import sliding_window_inference from monai.utils import BlendMode class Inferer(ABC): """ A base class for model inference. Extend this class to support operations during inference, e.g. a sliding window method. """ @abstractmethod def __call__(self, inputs: torch.Tensor, network: torch.nn.Module): """ Run inference on `inputs` with the `network` model. Args: inputs: input of the model inference. network: model for inference. Raises: NotImplementedError: When the subclass does not override this method. """ raise NotImplementedError(f"Subclass {self.__class__.__name__} must implement this method.") class SimpleInferer(Inferer): """ SimpleInferer is the normal inference method that run model forward() directly. """ def __init__(self) -> None: Inferer.__init__(self) def __call__(self, inputs: torch.Tensor, network: torch.nn.Module): """Unified callable function API of Inferers. Args: inputs: model input data for inference. network: target model to execute inference. """ return network(inputs) class SlidingWindowInferer(Inferer): """ Sliding window method for model inference, with `sw_batch_size` windows for every model.forward(). Args: roi_size: the window size to execute SlidingWindow evaluation. If it has non-positive components, the corresponding `inputs` size will be used. if the components of the `roi_size` are non-positive values, the transform will use the corresponding components of img size. For example, `roi_size=(32, -1)` will be adapted to `(32, 64)` if the second spatial dimension size of img is `64`. sw_batch_size: the batch size to run window slices. overlap: Amount of overlap between scans. mode: {``"constant"``, ``"gaussian"``} How to blend output of overlapping windows. Defaults to ``"constant"``. - ``"constant``": gives equal weight to all predictions. - ``"gaussian``": gives less weight to predictions on edges of windows. Note: the "sw_batch_size" here is to run a batch of window slices of 1 input image, not batch size of input images. """ def __init__( self, roi_size: Union[Sequence[int], int], sw_batch_size: int = 1, overlap: float = 0.25, mode: Union[BlendMode, str] = BlendMode.CONSTANT, ) -> None: Inferer.__init__(self) self.roi_size = roi_size self.sw_batch_size = sw_batch_size self.overlap = overlap self.mode: BlendMode = BlendMode(mode) def __call__(self, inputs: torch.Tensor, network: torch.nn.Module) -> torch.Tensor: """ Unified callable function API of Inferers. Args: inputs: model input data for inference. network: target model to execute inference. """ return sliding_window_inference(inputs, self.roi_size, self.sw_batch_size, network, self.overlap, self.mode)