| import functools |
| import itertools |
| import logging |
| import math |
| from numbers import Integral, Number, Real |
|
|
| import numpy as np |
| from numpy import ma |
|
|
| import matplotlib as mpl |
| import matplotlib.category |
| import matplotlib.cbook as cbook |
| import matplotlib.collections as mcoll |
| import matplotlib.colors as mcolors |
| import matplotlib.contour as mcontour |
| import matplotlib.dates |
| import matplotlib.image as mimage |
| import matplotlib.legend as mlegend |
| import matplotlib.lines as mlines |
| import matplotlib.markers as mmarkers |
| import matplotlib.mlab as mlab |
| import matplotlib.patches as mpatches |
| import matplotlib.path as mpath |
| import matplotlib.quiver as mquiver |
| import matplotlib.stackplot as mstack |
| import matplotlib.streamplot as mstream |
| import matplotlib.table as mtable |
| import matplotlib.text as mtext |
| import matplotlib.ticker as mticker |
| import matplotlib.transforms as mtransforms |
| import matplotlib.tri as mtri |
| import matplotlib.units as munits |
| from matplotlib import _api, _docstring, _preprocess_data |
| from matplotlib.axes._base import ( |
| _AxesBase, _TransformedBoundsLocator, _process_plot_format) |
| from matplotlib.axes._secondary_axes import SecondaryAxis |
| from matplotlib.container import BarContainer, ErrorbarContainer, StemContainer |
|
|
| _log = logging.getLogger(__name__) |
|
|
|
|
| |
| |
|
|
|
|
| @_docstring.interpd |
| class Axes(_AxesBase): |
| """ |
| An Axes object encapsulates all the elements of an individual (sub-)plot in |
| a figure. |
| |
| It contains most of the (sub-)plot elements: `~.axis.Axis`, |
| `~.axis.Tick`, `~.lines.Line2D`, `~.text.Text`, `~.patches.Polygon`, etc., |
| and sets the coordinate system. |
| |
| Like all visible elements in a figure, Axes is an `.Artist` subclass. |
| |
| The `Axes` instance supports callbacks through a callbacks attribute which |
| is a `~.cbook.CallbackRegistry` instance. The events you can connect to |
| are 'xlim_changed' and 'ylim_changed' and the callback will be called with |
| func(*ax*) where *ax* is the `Axes` instance. |
| |
| .. note:: |
| |
| As a user, you do not instantiate Axes directly, but use Axes creation |
| methods instead; e.g. from `.pyplot` or `.Figure`: |
| `~.pyplot.subplots`, `~.pyplot.subplot_mosaic` or `.Figure.add_axes`. |
| |
| Attributes |
| ---------- |
| dataLim : `.Bbox` |
| The bounding box enclosing all data displayed in the Axes. |
| viewLim : `.Bbox` |
| The view limits in data coordinates. |
| |
| """ |
| |
|
|
| def get_title(self, loc="center"): |
| """ |
| Get an Axes title. |
| |
| Get one of the three available Axes titles. The available titles |
| are positioned above the Axes in the center, flush with the left |
| edge, and flush with the right edge. |
| |
| Parameters |
| ---------- |
| loc : {'center', 'left', 'right'}, str, default: 'center' |
| Which title to return. |
| |
| Returns |
| ------- |
| str |
| The title text string. |
| |
| """ |
| titles = {'left': self._left_title, |
| 'center': self.title, |
| 'right': self._right_title} |
| title = _api.check_getitem(titles, loc=loc.lower()) |
| return title.get_text() |
|
|
| def set_title(self, label, fontdict=None, loc=None, pad=None, *, y=None, |
| **kwargs): |
| """ |
| Set a title for the Axes. |
| |
| Set one of the three available Axes titles. The available titles |
| are positioned above the Axes in the center, flush with the left |
| edge, and flush with the right edge. |
| |
| Parameters |
| ---------- |
| label : str |
| Text to use for the title |
| |
| fontdict : dict |
| |
| .. admonition:: Discouraged |
| |
| The use of *fontdict* is discouraged. Parameters should be passed as |
| individual keyword arguments or using dictionary-unpacking |
| ``set_title(..., **fontdict)``. |
| |
| A dictionary controlling the appearance of the title text, |
| the default *fontdict* is:: |
| |
| {'fontsize': rcParams['axes.titlesize'], |
| 'fontweight': rcParams['axes.titleweight'], |
| 'color': rcParams['axes.titlecolor'], |
| 'verticalalignment': 'baseline', |
| 'horizontalalignment': loc} |
| |
| loc : {'center', 'left', 'right'}, default: :rc:`axes.titlelocation` |
| Which title to set. |
| |
| y : float, default: :rc:`axes.titley` |
| Vertical Axes location for the title (1.0 is the top). If |
| None (the default) and :rc:`axes.titley` is also None, y is |
| determined automatically to avoid decorators on the Axes. |
| |
| pad : float, default: :rc:`axes.titlepad` |
| The offset of the title from the top of the Axes, in points. |
| |
| Returns |
| ------- |
| `.Text` |
| The matplotlib text instance representing the title |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.text.Text` properties |
| Other keyword arguments are text properties, see `.Text` for a list |
| of valid text properties. |
| """ |
| if loc is None: |
| loc = mpl.rcParams['axes.titlelocation'] |
|
|
| if y is None: |
| y = mpl.rcParams['axes.titley'] |
| if y is None: |
| y = 1.0 |
| else: |
| self._autotitlepos = False |
| kwargs['y'] = y |
|
|
| titles = {'left': self._left_title, |
| 'center': self.title, |
| 'right': self._right_title} |
| title = _api.check_getitem(titles, loc=loc.lower()) |
| default = { |
| 'fontsize': mpl.rcParams['axes.titlesize'], |
| 'fontweight': mpl.rcParams['axes.titleweight'], |
| 'verticalalignment': 'baseline', |
| 'horizontalalignment': loc.lower()} |
| titlecolor = mpl.rcParams['axes.titlecolor'] |
| if not cbook._str_lower_equal(titlecolor, 'auto'): |
| default["color"] = titlecolor |
| if pad is None: |
| pad = mpl.rcParams['axes.titlepad'] |
| self._set_title_offset_trans(float(pad)) |
| title.set_text(label) |
| title.update(default) |
| if fontdict is not None: |
| title.update(fontdict) |
| title._internal_update(kwargs) |
| return title |
|
|
| def get_legend_handles_labels(self, legend_handler_map=None): |
| """ |
| Return handles and labels for legend |
| |
| ``ax.legend()`` is equivalent to :: |
| |
| h, l = ax.get_legend_handles_labels() |
| ax.legend(h, l) |
| """ |
| |
| handles, labels = mlegend._get_legend_handles_labels( |
| [self], legend_handler_map) |
| return handles, labels |
|
|
| @_docstring.dedent_interpd |
| def legend(self, *args, **kwargs): |
| """ |
| Place a legend on the Axes. |
| |
| Call signatures:: |
| |
| legend() |
| legend(handles, labels) |
| legend(handles=handles) |
| legend(labels) |
| |
| The call signatures correspond to the following different ways to use |
| this method: |
| |
| **1. Automatic detection of elements to be shown in the legend** |
| |
| The elements to be added to the legend are automatically determined, |
| when you do not pass in any extra arguments. |
| |
| In this case, the labels are taken from the artist. You can specify |
| them either at artist creation or by calling the |
| :meth:`~.Artist.set_label` method on the artist:: |
| |
| ax.plot([1, 2, 3], label='Inline label') |
| ax.legend() |
| |
| or:: |
| |
| line, = ax.plot([1, 2, 3]) |
| line.set_label('Label via method') |
| ax.legend() |
| |
| .. note:: |
| Specific artists can be excluded from the automatic legend element |
| selection by using a label starting with an underscore, "_". |
| A string starting with an underscore is the default label for all |
| artists, so calling `.Axes.legend` without any arguments and |
| without setting the labels manually will result in no legend being |
| drawn. |
| |
| |
| **2. Explicitly listing the artists and labels in the legend** |
| |
| For full control of which artists have a legend entry, it is possible |
| to pass an iterable of legend artists followed by an iterable of |
| legend labels respectively:: |
| |
| ax.legend([line1, line2, line3], ['label1', 'label2', 'label3']) |
| |
| |
| **3. Explicitly listing the artists in the legend** |
| |
| This is similar to 2, but the labels are taken from the artists' |
| label properties. Example:: |
| |
| line1, = ax.plot([1, 2, 3], label='label1') |
| line2, = ax.plot([1, 2, 3], label='label2') |
| ax.legend(handles=[line1, line2]) |
| |
| |
| **4. Labeling existing plot elements** |
| |
| .. admonition:: Discouraged |
| |
| This call signature is discouraged, because the relation between |
| plot elements and labels is only implicit by their order and can |
| easily be mixed up. |
| |
| To make a legend for all artists on an Axes, call this function with |
| an iterable of strings, one for each legend item. For example:: |
| |
| ax.plot([1, 2, 3]) |
| ax.plot([5, 6, 7]) |
| ax.legend(['First line', 'Second line']) |
| |
| |
| Parameters |
| ---------- |
| handles : sequence of `.Artist`, optional |
| A list of Artists (lines, patches) to be added to the legend. |
| Use this together with *labels*, if you need full control on what |
| is shown in the legend and the automatic mechanism described above |
| is not sufficient. |
| |
| The length of handles and labels should be the same in this |
| case. If they are not, they are truncated to the smaller length. |
| |
| labels : list of str, optional |
| A list of labels to show next to the artists. |
| Use this together with *handles*, if you need full control on what |
| is shown in the legend and the automatic mechanism described above |
| is not sufficient. |
| |
| Returns |
| ------- |
| `~matplotlib.legend.Legend` |
| |
| Other Parameters |
| ---------------- |
| %(_legend_kw_axes)s |
| |
| See Also |
| -------- |
| .Figure.legend |
| |
| Notes |
| ----- |
| Some artists are not supported by this function. See |
| :ref:`legend_guide` for details. |
| |
| Examples |
| -------- |
| .. plot:: gallery/text_labels_and_annotations/legend.py |
| """ |
| handles, labels, kwargs = mlegend._parse_legend_args([self], *args, **kwargs) |
| self.legend_ = mlegend.Legend(self, handles, labels, **kwargs) |
| self.legend_._remove_method = self._remove_legend |
| return self.legend_ |
|
|
| def _remove_legend(self, legend): |
| self.legend_ = None |
|
|
| def inset_axes(self, bounds, *, transform=None, zorder=5, **kwargs): |
| """ |
| Add a child inset Axes to this existing Axes. |
| |
| Warnings |
| -------- |
| This method is experimental as of 3.0, and the API may change. |
| |
| Parameters |
| ---------- |
| bounds : [x0, y0, width, height] |
| Lower-left corner of inset Axes, and its width and height. |
| |
| transform : `.Transform` |
| Defaults to `ax.transAxes`, i.e. the units of *rect* are in |
| Axes-relative coordinates. |
| |
| projection : {None, 'aitoff', 'hammer', 'lambert', 'mollweide', \ |
| 'polar', 'rectilinear', str}, optional |
| The projection type of the inset `~.axes.Axes`. *str* is the name |
| of a custom projection, see `~matplotlib.projections`. The default |
| None results in a 'rectilinear' projection. |
| |
| polar : bool, default: False |
| If True, equivalent to projection='polar'. |
| |
| axes_class : subclass type of `~.axes.Axes`, optional |
| The `.axes.Axes` subclass that is instantiated. This parameter |
| is incompatible with *projection* and *polar*. See |
| :ref:`axisartist_users-guide-index` for examples. |
| |
| zorder : number |
| Defaults to 5 (same as `.Axes.legend`). Adjust higher or lower |
| to change whether it is above or below data plotted on the |
| parent Axes. |
| |
| **kwargs |
| Other keyword arguments are passed on to the inset Axes class. |
| |
| Returns |
| ------- |
| ax |
| The created `~.axes.Axes` instance. |
| |
| Examples |
| -------- |
| This example makes two inset Axes, the first is in Axes-relative |
| coordinates, and the second in data-coordinates:: |
| |
| fig, ax = plt.subplots() |
| ax.plot(range(10)) |
| axin1 = ax.inset_axes([0.8, 0.1, 0.15, 0.15]) |
| axin2 = ax.inset_axes( |
| [5, 7, 2.3, 2.3], transform=ax.transData) |
| |
| """ |
| if transform is None: |
| transform = self.transAxes |
| kwargs.setdefault('label', 'inset_axes') |
|
|
| |
| inset_locator = _TransformedBoundsLocator(bounds, transform) |
| bounds = inset_locator(self, None).bounds |
| projection_class, pkw = self.figure._process_projection_requirements(**kwargs) |
| inset_ax = projection_class(self.figure, bounds, zorder=zorder, **pkw) |
|
|
| |
| |
| inset_ax.set_axes_locator(inset_locator) |
|
|
| self.add_child_axes(inset_ax) |
|
|
| return inset_ax |
|
|
| @_docstring.dedent_interpd |
| def indicate_inset(self, bounds, inset_ax=None, *, transform=None, |
| facecolor='none', edgecolor='0.5', alpha=0.5, |
| zorder=4.99, **kwargs): |
| """ |
| Add an inset indicator to the Axes. This is a rectangle on the plot |
| at the position indicated by *bounds* that optionally has lines that |
| connect the rectangle to an inset Axes (`.Axes.inset_axes`). |
| |
| Warnings |
| -------- |
| This method is experimental as of 3.0, and the API may change. |
| |
| Parameters |
| ---------- |
| bounds : [x0, y0, width, height] |
| Lower-left corner of rectangle to be marked, and its width |
| and height. |
| |
| inset_ax : `.Axes` |
| An optional inset Axes to draw connecting lines to. Two lines are |
| drawn connecting the indicator box to the inset Axes on corners |
| chosen so as to not overlap with the indicator box. |
| |
| transform : `.Transform` |
| Transform for the rectangle coordinates. Defaults to |
| `ax.transAxes`, i.e. the units of *rect* are in Axes-relative |
| coordinates. |
| |
| facecolor : color, default: 'none' |
| Facecolor of the rectangle. |
| |
| edgecolor : color, default: '0.5' |
| Color of the rectangle and color of the connecting lines. |
| |
| alpha : float, default: 0.5 |
| Transparency of the rectangle and connector lines. |
| |
| zorder : float, default: 4.99 |
| Drawing order of the rectangle and connector lines. The default, |
| 4.99, is just below the default level of inset Axes. |
| |
| **kwargs |
| Other keyword arguments are passed on to the `.Rectangle` patch: |
| |
| %(Rectangle:kwdoc)s |
| |
| Returns |
| ------- |
| rectangle_patch : `.patches.Rectangle` |
| The indicator frame. |
| |
| connector_lines : 4-tuple of `.patches.ConnectionPatch` |
| The four connector lines connecting to (lower_left, upper_left, |
| lower_right upper_right) corners of *inset_ax*. Two lines are |
| set with visibility to *False*, but the user can set the |
| visibility to True if the automatic choice is not deemed correct. |
| |
| """ |
| |
| |
| self.apply_aspect() |
|
|
| if transform is None: |
| transform = self.transData |
| kwargs.setdefault('label', '_indicate_inset') |
|
|
| x, y, width, height = bounds |
| rectangle_patch = mpatches.Rectangle( |
| (x, y), width, height, |
| facecolor=facecolor, edgecolor=edgecolor, alpha=alpha, |
| zorder=zorder, transform=transform, **kwargs) |
| self.add_patch(rectangle_patch) |
|
|
| connects = [] |
|
|
| if inset_ax is not None: |
| |
| for xy_inset_ax in [(0, 0), (0, 1), (1, 0), (1, 1)]: |
| |
| |
| |
| ex, ey = xy_inset_ax |
| if self.xaxis.get_inverted(): |
| ex = 1 - ex |
| if self.yaxis.get_inverted(): |
| ey = 1 - ey |
| xy_data = x + ex * width, y + ey * height |
| p = mpatches.ConnectionPatch( |
| xyA=xy_inset_ax, coordsA=inset_ax.transAxes, |
| xyB=xy_data, coordsB=self.transData, |
| arrowstyle="-", zorder=zorder, |
| edgecolor=edgecolor, alpha=alpha) |
| connects.append(p) |
| self.add_patch(p) |
|
|
| |
| pos = inset_ax.get_position() |
| bboxins = pos.transformed(self.figure.transSubfigure) |
| rectbbox = mtransforms.Bbox.from_bounds( |
| *bounds |
| ).transformed(transform) |
| x0 = rectbbox.x0 < bboxins.x0 |
| x1 = rectbbox.x1 < bboxins.x1 |
| y0 = rectbbox.y0 < bboxins.y0 |
| y1 = rectbbox.y1 < bboxins.y1 |
| connects[0].set_visible(x0 ^ y0) |
| connects[1].set_visible(x0 == y1) |
| connects[2].set_visible(x1 == y0) |
| connects[3].set_visible(x1 ^ y1) |
|
|
| return rectangle_patch, tuple(connects) if connects else None |
|
|
| def indicate_inset_zoom(self, inset_ax, **kwargs): |
| """ |
| Add an inset indicator rectangle to the Axes based on the axis |
| limits for an *inset_ax* and draw connectors between *inset_ax* |
| and the rectangle. |
| |
| Warnings |
| -------- |
| This method is experimental as of 3.0, and the API may change. |
| |
| Parameters |
| ---------- |
| inset_ax : `.Axes` |
| Inset Axes to draw connecting lines to. Two lines are |
| drawn connecting the indicator box to the inset Axes on corners |
| chosen so as to not overlap with the indicator box. |
| |
| **kwargs |
| Other keyword arguments are passed on to `.Axes.indicate_inset` |
| |
| Returns |
| ------- |
| rectangle_patch : `.patches.Rectangle` |
| Rectangle artist. |
| |
| connector_lines : 4-tuple of `.patches.ConnectionPatch` |
| Each of four connector lines coming from the rectangle drawn on |
| this axis, in the order lower left, upper left, lower right, |
| upper right. |
| Two are set with visibility to *False*, but the user can |
| set the visibility to *True* if the automatic choice is not deemed |
| correct. |
| """ |
|
|
| xlim = inset_ax.get_xlim() |
| ylim = inset_ax.get_ylim() |
| rect = (xlim[0], ylim[0], xlim[1] - xlim[0], ylim[1] - ylim[0]) |
| return self.indicate_inset(rect, inset_ax, **kwargs) |
|
|
| @_docstring.dedent_interpd |
| def secondary_xaxis(self, location, *, functions=None, **kwargs): |
| """ |
| Add a second x-axis to this `~.axes.Axes`. |
| |
| For example if we want to have a second scale for the data plotted on |
| the xaxis. |
| |
| %(_secax_docstring)s |
| |
| Examples |
| -------- |
| The main axis shows frequency, and the secondary axis shows period. |
| |
| .. plot:: |
| |
| fig, ax = plt.subplots() |
| ax.loglog(range(1, 360, 5), range(1, 360, 5)) |
| ax.set_xlabel('frequency [Hz]') |
| |
| def invert(x): |
| # 1/x with special treatment of x == 0 |
| x = np.array(x).astype(float) |
| near_zero = np.isclose(x, 0) |
| x[near_zero] = np.inf |
| x[~near_zero] = 1 / x[~near_zero] |
| return x |
| |
| # the inverse of 1/x is itself |
| secax = ax.secondary_xaxis('top', functions=(invert, invert)) |
| secax.set_xlabel('Period [s]') |
| plt.show() |
| """ |
| if location in ['top', 'bottom'] or isinstance(location, Real): |
| secondary_ax = SecondaryAxis(self, 'x', location, functions, |
| **kwargs) |
| self.add_child_axes(secondary_ax) |
| return secondary_ax |
| else: |
| raise ValueError('secondary_xaxis location must be either ' |
| 'a float or "top"/"bottom"') |
|
|
| @_docstring.dedent_interpd |
| def secondary_yaxis(self, location, *, functions=None, **kwargs): |
| """ |
| Add a second y-axis to this `~.axes.Axes`. |
| |
| For example if we want to have a second scale for the data plotted on |
| the yaxis. |
| |
| %(_secax_docstring)s |
| |
| Examples |
| -------- |
| Add a secondary Axes that converts from radians to degrees |
| |
| .. plot:: |
| |
| fig, ax = plt.subplots() |
| ax.plot(range(1, 360, 5), range(1, 360, 5)) |
| ax.set_ylabel('degrees') |
| secax = ax.secondary_yaxis('right', functions=(np.deg2rad, |
| np.rad2deg)) |
| secax.set_ylabel('radians') |
| """ |
| if location in ['left', 'right'] or isinstance(location, Real): |
| secondary_ax = SecondaryAxis(self, 'y', location, |
| functions, **kwargs) |
| self.add_child_axes(secondary_ax) |
| return secondary_ax |
| else: |
| raise ValueError('secondary_yaxis location must be either ' |
| 'a float or "left"/"right"') |
|
|
| @_docstring.dedent_interpd |
| def text(self, x, y, s, fontdict=None, **kwargs): |
| """ |
| Add text to the Axes. |
| |
| Add the text *s* to the Axes at location *x*, *y* in data coordinates. |
| |
| Parameters |
| ---------- |
| x, y : float |
| The position to place the text. By default, this is in data |
| coordinates. The coordinate system can be changed using the |
| *transform* parameter. |
| |
| s : str |
| The text. |
| |
| fontdict : dict, default: None |
| |
| .. admonition:: Discouraged |
| |
| The use of *fontdict* is discouraged. Parameters should be passed as |
| individual keyword arguments or using dictionary-unpacking |
| ``text(..., **fontdict)``. |
| |
| A dictionary to override the default text properties. If fontdict |
| is None, the defaults are determined by `.rcParams`. |
| |
| Returns |
| ------- |
| `.Text` |
| The created `.Text` instance. |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.text.Text` properties. |
| Other miscellaneous text parameters. |
| |
| %(Text:kwdoc)s |
| |
| Examples |
| -------- |
| Individual keyword arguments can be used to override any given |
| parameter:: |
| |
| >>> text(x, y, s, fontsize=12) |
| |
| The default transform specifies that text is in data coords, |
| alternatively, you can specify text in axis coords ((0, 0) is |
| lower-left and (1, 1) is upper-right). The example below places |
| text in the center of the Axes:: |
| |
| >>> text(0.5, 0.5, 'matplotlib', horizontalalignment='center', |
| ... verticalalignment='center', transform=ax.transAxes) |
| |
| You can put a rectangular box around the text instance (e.g., to |
| set a background color) by using the keyword *bbox*. *bbox* is |
| a dictionary of `~matplotlib.patches.Rectangle` |
| properties. For example:: |
| |
| >>> text(x, y, s, bbox=dict(facecolor='red', alpha=0.5)) |
| """ |
| effective_kwargs = { |
| 'verticalalignment': 'baseline', |
| 'horizontalalignment': 'left', |
| 'transform': self.transData, |
| 'clip_on': False, |
| **(fontdict if fontdict is not None else {}), |
| **kwargs, |
| } |
| t = mtext.Text(x, y, text=s, **effective_kwargs) |
| if t.get_clip_path() is None: |
| t.set_clip_path(self.patch) |
| self._add_text(t) |
| return t |
|
|
| @_docstring.dedent_interpd |
| def annotate(self, text, xy, xytext=None, xycoords='data', textcoords=None, |
| arrowprops=None, annotation_clip=None, **kwargs): |
| |
| |
| a = mtext.Annotation(text, xy, xytext=xytext, xycoords=xycoords, |
| textcoords=textcoords, arrowprops=arrowprops, |
| annotation_clip=annotation_clip, **kwargs) |
| a.set_transform(mtransforms.IdentityTransform()) |
| if kwargs.get('clip_on', False) and a.get_clip_path() is None: |
| a.set_clip_path(self.patch) |
| self._add_text(a) |
| return a |
| annotate.__doc__ = mtext.Annotation.__init__.__doc__ |
| |
|
|
| @_docstring.dedent_interpd |
| def axhline(self, y=0, xmin=0, xmax=1, **kwargs): |
| """ |
| Add a horizontal line across the Axes. |
| |
| Parameters |
| ---------- |
| y : float, default: 0 |
| y position in data coordinates of the horizontal line. |
| |
| xmin : float, default: 0 |
| Should be between 0 and 1, 0 being the far left of the plot, 1 the |
| far right of the plot. |
| |
| xmax : float, default: 1 |
| Should be between 0 and 1, 0 being the far left of the plot, 1 the |
| far right of the plot. |
| |
| Returns |
| ------- |
| `~matplotlib.lines.Line2D` |
| |
| Other Parameters |
| ---------------- |
| **kwargs |
| Valid keyword arguments are `.Line2D` properties, except for |
| 'transform': |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| hlines : Add horizontal lines in data coordinates. |
| axhspan : Add a horizontal span (rectangle) across the axis. |
| axline : Add a line with an arbitrary slope. |
| |
| Examples |
| -------- |
| * draw a thick red hline at 'y' = 0 that spans the xrange:: |
| |
| >>> axhline(linewidth=4, color='r') |
| |
| * draw a default hline at 'y' = 1 that spans the xrange:: |
| |
| >>> axhline(y=1) |
| |
| * draw a default hline at 'y' = .5 that spans the middle half of |
| the xrange:: |
| |
| >>> axhline(y=.5, xmin=0.25, xmax=0.75) |
| """ |
| self._check_no_units([xmin, xmax], ['xmin', 'xmax']) |
| if "transform" in kwargs: |
| raise ValueError("'transform' is not allowed as a keyword " |
| "argument; axhline generates its own transform.") |
| ymin, ymax = self.get_ybound() |
|
|
| |
| yy, = self._process_unit_info([("y", y)], kwargs) |
| scaley = (yy < ymin) or (yy > ymax) |
|
|
| trans = self.get_yaxis_transform(which='grid') |
| l = mlines.Line2D([xmin, xmax], [y, y], transform=trans, **kwargs) |
| self.add_line(l) |
| if scaley: |
| self._request_autoscale_view("y") |
| return l |
|
|
| @_docstring.dedent_interpd |
| def axvline(self, x=0, ymin=0, ymax=1, **kwargs): |
| """ |
| Add a vertical line across the Axes. |
| |
| Parameters |
| ---------- |
| x : float, default: 0 |
| x position in data coordinates of the vertical line. |
| |
| ymin : float, default: 0 |
| Should be between 0 and 1, 0 being the bottom of the plot, 1 the |
| top of the plot. |
| |
| ymax : float, default: 1 |
| Should be between 0 and 1, 0 being the bottom of the plot, 1 the |
| top of the plot. |
| |
| Returns |
| ------- |
| `~matplotlib.lines.Line2D` |
| |
| Other Parameters |
| ---------------- |
| **kwargs |
| Valid keyword arguments are `.Line2D` properties, except for |
| 'transform': |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| vlines : Add vertical lines in data coordinates. |
| axvspan : Add a vertical span (rectangle) across the axis. |
| axline : Add a line with an arbitrary slope. |
| |
| Examples |
| -------- |
| * draw a thick red vline at *x* = 0 that spans the yrange:: |
| |
| >>> axvline(linewidth=4, color='r') |
| |
| * draw a default vline at *x* = 1 that spans the yrange:: |
| |
| >>> axvline(x=1) |
| |
| * draw a default vline at *x* = .5 that spans the middle half of |
| the yrange:: |
| |
| >>> axvline(x=.5, ymin=0.25, ymax=0.75) |
| """ |
| self._check_no_units([ymin, ymax], ['ymin', 'ymax']) |
| if "transform" in kwargs: |
| raise ValueError("'transform' is not allowed as a keyword " |
| "argument; axvline generates its own transform.") |
| xmin, xmax = self.get_xbound() |
|
|
| |
| xx, = self._process_unit_info([("x", x)], kwargs) |
| scalex = (xx < xmin) or (xx > xmax) |
|
|
| trans = self.get_xaxis_transform(which='grid') |
| l = mlines.Line2D([x, x], [ymin, ymax], transform=trans, **kwargs) |
| self.add_line(l) |
| if scalex: |
| self._request_autoscale_view("x") |
| return l |
|
|
| @staticmethod |
| def _check_no_units(vals, names): |
| |
| for val, name in zip(vals, names): |
| if not munits._is_natively_supported(val): |
| raise ValueError(f"{name} must be a single scalar value, " |
| f"but got {val}") |
|
|
| @_docstring.dedent_interpd |
| def axline(self, xy1, xy2=None, *, slope=None, **kwargs): |
| """ |
| Add an infinitely long straight line. |
| |
| The line can be defined either by two points *xy1* and *xy2*, or |
| by one point *xy1* and a *slope*. |
| |
| This draws a straight line "on the screen", regardless of the x and y |
| scales, and is thus also suitable for drawing exponential decays in |
| semilog plots, power laws in loglog plots, etc. However, *slope* |
| should only be used with linear scales; It has no clear meaning for |
| all other scales, and thus the behavior is undefined. Please specify |
| the line using the points *xy1*, *xy2* for non-linear scales. |
| |
| The *transform* keyword argument only applies to the points *xy1*, |
| *xy2*. The *slope* (if given) is always in data coordinates. This can |
| be used e.g. with ``ax.transAxes`` for drawing grid lines with a fixed |
| slope. |
| |
| Parameters |
| ---------- |
| xy1, xy2 : (float, float) |
| Points for the line to pass through. |
| Either *xy2* or *slope* has to be given. |
| slope : float, optional |
| The slope of the line. Either *xy2* or *slope* has to be given. |
| |
| Returns |
| ------- |
| `.Line2D` |
| |
| Other Parameters |
| ---------------- |
| **kwargs |
| Valid kwargs are `.Line2D` properties |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| axhline : for horizontal lines |
| axvline : for vertical lines |
| |
| Examples |
| -------- |
| Draw a thick red line passing through (0, 0) and (1, 1):: |
| |
| >>> axline((0, 0), (1, 1), linewidth=4, color='r') |
| """ |
| if slope is not None and (self.get_xscale() != 'linear' or |
| self.get_yscale() != 'linear'): |
| raise TypeError("'slope' cannot be used with non-linear scales") |
|
|
| datalim = [xy1] if xy2 is None else [xy1, xy2] |
| if "transform" in kwargs: |
| |
| |
| datalim = [] |
|
|
| line = mlines.AxLine(xy1, xy2, slope, **kwargs) |
| |
| self._set_artist_props(line) |
| if line.get_clip_path() is None: |
| line.set_clip_path(self.patch) |
| if not line.get_label(): |
| line.set_label(f"_child{len(self._children)}") |
| self._children.append(line) |
| line._remove_method = self._children.remove |
| self.update_datalim(datalim) |
|
|
| self._request_autoscale_view() |
| return line |
|
|
| @_docstring.dedent_interpd |
| def axhspan(self, ymin, ymax, xmin=0, xmax=1, **kwargs): |
| """ |
| Add a horizontal span (rectangle) across the Axes. |
| |
| The rectangle spans from *ymin* to *ymax* vertically, and, by default, |
| the whole x-axis horizontally. The x-span can be set using *xmin* |
| (default: 0) and *xmax* (default: 1) which are in axis units; e.g. |
| ``xmin = 0.5`` always refers to the middle of the x-axis regardless of |
| the limits set by `~.Axes.set_xlim`. |
| |
| Parameters |
| ---------- |
| ymin : float |
| Lower y-coordinate of the span, in data units. |
| ymax : float |
| Upper y-coordinate of the span, in data units. |
| xmin : float, default: 0 |
| Lower x-coordinate of the span, in x-axis (0-1) units. |
| xmax : float, default: 1 |
| Upper x-coordinate of the span, in x-axis (0-1) units. |
| |
| Returns |
| ------- |
| `~matplotlib.patches.Polygon` |
| Horizontal span (rectangle) from (xmin, ymin) to (xmax, ymax). |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.patches.Polygon` properties |
| |
| %(Polygon:kwdoc)s |
| |
| See Also |
| -------- |
| axvspan : Add a vertical span across the Axes. |
| """ |
| |
| self._check_no_units([xmin, xmax], ['xmin', 'xmax']) |
| (ymin, ymax), = self._process_unit_info([("y", [ymin, ymax])], kwargs) |
|
|
| verts = (xmin, ymin), (xmin, ymax), (xmax, ymax), (xmax, ymin) |
| p = mpatches.Polygon(verts, **kwargs) |
| p.set_transform(self.get_yaxis_transform(which="grid")) |
| self.add_patch(p) |
| self._request_autoscale_view("y") |
| return p |
|
|
| @_docstring.dedent_interpd |
| def axvspan(self, xmin, xmax, ymin=0, ymax=1, **kwargs): |
| """ |
| Add a vertical span (rectangle) across the Axes. |
| |
| The rectangle spans from *xmin* to *xmax* horizontally, and, by |
| default, the whole y-axis vertically. The y-span can be set using |
| *ymin* (default: 0) and *ymax* (default: 1) which are in axis units; |
| e.g. ``ymin = 0.5`` always refers to the middle of the y-axis |
| regardless of the limits set by `~.Axes.set_ylim`. |
| |
| Parameters |
| ---------- |
| xmin : float |
| Lower x-coordinate of the span, in data units. |
| xmax : float |
| Upper x-coordinate of the span, in data units. |
| ymin : float, default: 0 |
| Lower y-coordinate of the span, in y-axis units (0-1). |
| ymax : float, default: 1 |
| Upper y-coordinate of the span, in y-axis units (0-1). |
| |
| Returns |
| ------- |
| `~matplotlib.patches.Polygon` |
| Vertical span (rectangle) from (xmin, ymin) to (xmax, ymax). |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.patches.Polygon` properties |
| |
| %(Polygon:kwdoc)s |
| |
| See Also |
| -------- |
| axhspan : Add a horizontal span across the Axes. |
| |
| Examples |
| -------- |
| Draw a vertical, green, translucent rectangle from x = 1.25 to |
| x = 1.55 that spans the yrange of the Axes. |
| |
| >>> axvspan(1.25, 1.55, facecolor='g', alpha=0.5) |
| |
| """ |
| |
| self._check_no_units([ymin, ymax], ['ymin', 'ymax']) |
| (xmin, xmax), = self._process_unit_info([("x", [xmin, xmax])], kwargs) |
|
|
| verts = [(xmin, ymin), (xmin, ymax), (xmax, ymax), (xmax, ymin)] |
| p = mpatches.Polygon(verts, **kwargs) |
| p.set_transform(self.get_xaxis_transform(which="grid")) |
| p.get_path()._interpolation_steps = 100 |
| self.add_patch(p) |
| self._request_autoscale_view("x") |
| return p |
|
|
| @_preprocess_data(replace_names=["y", "xmin", "xmax", "colors"], |
| label_namer="y") |
| def hlines(self, y, xmin, xmax, colors=None, linestyles='solid', |
| label='', **kwargs): |
| """ |
| Plot horizontal lines at each *y* from *xmin* to *xmax*. |
| |
| Parameters |
| ---------- |
| y : float or array-like |
| y-indexes where to plot the lines. |
| |
| xmin, xmax : float or array-like |
| Respective beginning and end of each line. If scalars are |
| provided, all lines will have the same length. |
| |
| colors : color or list of colors, default: :rc:`lines.color` |
| |
| linestyles : {'solid', 'dashed', 'dashdot', 'dotted'}, default: 'solid' |
| |
| label : str, default: '' |
| |
| Returns |
| ------- |
| `~matplotlib.collections.LineCollection` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| **kwargs : `~matplotlib.collections.LineCollection` properties. |
| |
| See Also |
| -------- |
| vlines : vertical lines |
| axhline : horizontal line across the Axes |
| """ |
|
|
| |
| xmin, xmax, y = self._process_unit_info( |
| [("x", xmin), ("x", xmax), ("y", y)], kwargs) |
|
|
| if not np.iterable(y): |
| y = [y] |
| if not np.iterable(xmin): |
| xmin = [xmin] |
| if not np.iterable(xmax): |
| xmax = [xmax] |
|
|
| |
| y, xmin, xmax = cbook._combine_masks(y, xmin, xmax) |
| y = np.ravel(y) |
| xmin = np.ravel(xmin) |
| xmax = np.ravel(xmax) |
|
|
| masked_verts = np.ma.empty((len(y), 2, 2)) |
| masked_verts[:, 0, 0] = xmin |
| masked_verts[:, 0, 1] = y |
| masked_verts[:, 1, 0] = xmax |
| masked_verts[:, 1, 1] = y |
|
|
| lines = mcoll.LineCollection(masked_verts, colors=colors, |
| linestyles=linestyles, label=label) |
| self.add_collection(lines, autolim=False) |
| lines._internal_update(kwargs) |
|
|
| if len(y) > 0: |
| |
| |
| |
| updatex = True |
| updatey = True |
| if self.name == "rectilinear": |
| datalim = lines.get_datalim(self.transData) |
| t = lines.get_transform() |
| updatex, updatey = t.contains_branch_seperately(self.transData) |
| minx = np.nanmin(datalim.xmin) |
| maxx = np.nanmax(datalim.xmax) |
| miny = np.nanmin(datalim.ymin) |
| maxy = np.nanmax(datalim.ymax) |
| else: |
| minx = np.nanmin(masked_verts[..., 0]) |
| maxx = np.nanmax(masked_verts[..., 0]) |
| miny = np.nanmin(masked_verts[..., 1]) |
| maxy = np.nanmax(masked_verts[..., 1]) |
|
|
| corners = (minx, miny), (maxx, maxy) |
| self.update_datalim(corners, updatex, updatey) |
| self._request_autoscale_view() |
| return lines |
|
|
| @_preprocess_data(replace_names=["x", "ymin", "ymax", "colors"], |
| label_namer="x") |
| def vlines(self, x, ymin, ymax, colors=None, linestyles='solid', |
| label='', **kwargs): |
| """ |
| Plot vertical lines at each *x* from *ymin* to *ymax*. |
| |
| Parameters |
| ---------- |
| x : float or array-like |
| x-indexes where to plot the lines. |
| |
| ymin, ymax : float or array-like |
| Respective beginning and end of each line. If scalars are |
| provided, all lines will have the same length. |
| |
| colors : color or list of colors, default: :rc:`lines.color` |
| |
| linestyles : {'solid', 'dashed', 'dashdot', 'dotted'}, default: 'solid' |
| |
| label : str, default: '' |
| |
| Returns |
| ------- |
| `~matplotlib.collections.LineCollection` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| **kwargs : `~matplotlib.collections.LineCollection` properties. |
| |
| See Also |
| -------- |
| hlines : horizontal lines |
| axvline : vertical line across the Axes |
| """ |
|
|
| |
| x, ymin, ymax = self._process_unit_info( |
| [("x", x), ("y", ymin), ("y", ymax)], kwargs) |
|
|
| if not np.iterable(x): |
| x = [x] |
| if not np.iterable(ymin): |
| ymin = [ymin] |
| if not np.iterable(ymax): |
| ymax = [ymax] |
|
|
| |
| x, ymin, ymax = cbook._combine_masks(x, ymin, ymax) |
| x = np.ravel(x) |
| ymin = np.ravel(ymin) |
| ymax = np.ravel(ymax) |
|
|
| masked_verts = np.ma.empty((len(x), 2, 2)) |
| masked_verts[:, 0, 0] = x |
| masked_verts[:, 0, 1] = ymin |
| masked_verts[:, 1, 0] = x |
| masked_verts[:, 1, 1] = ymax |
|
|
| lines = mcoll.LineCollection(masked_verts, colors=colors, |
| linestyles=linestyles, label=label) |
| self.add_collection(lines, autolim=False) |
| lines._internal_update(kwargs) |
|
|
| if len(x) > 0: |
| |
| |
| |
| updatex = True |
| updatey = True |
| if self.name == "rectilinear": |
| datalim = lines.get_datalim(self.transData) |
| t = lines.get_transform() |
| updatex, updatey = t.contains_branch_seperately(self.transData) |
| minx = np.nanmin(datalim.xmin) |
| maxx = np.nanmax(datalim.xmax) |
| miny = np.nanmin(datalim.ymin) |
| maxy = np.nanmax(datalim.ymax) |
| else: |
| minx = np.nanmin(masked_verts[..., 0]) |
| maxx = np.nanmax(masked_verts[..., 0]) |
| miny = np.nanmin(masked_verts[..., 1]) |
| maxy = np.nanmax(masked_verts[..., 1]) |
|
|
| corners = (minx, miny), (maxx, maxy) |
| self.update_datalim(corners, updatex, updatey) |
| self._request_autoscale_view() |
| return lines |
|
|
| @_preprocess_data(replace_names=["positions", "lineoffsets", |
| "linelengths", "linewidths", |
| "colors", "linestyles"]) |
| @_docstring.dedent_interpd |
| def eventplot(self, positions, orientation='horizontal', lineoffsets=1, |
| linelengths=1, linewidths=None, colors=None, alpha=None, |
| linestyles='solid', **kwargs): |
| """ |
| Plot identical parallel lines at the given positions. |
| |
| This type of plot is commonly used in neuroscience for representing |
| neural events, where it is usually called a spike raster, dot raster, |
| or raster plot. |
| |
| However, it is useful in any situation where you wish to show the |
| timing or position of multiple sets of discrete events, such as the |
| arrival times of people to a business on each day of the month or the |
| date of hurricanes each year of the last century. |
| |
| Parameters |
| ---------- |
| positions : array-like or list of array-like |
| A 1D array-like defines the positions of one sequence of events. |
| |
| Multiple groups of events may be passed as a list of array-likes. |
| Each group can be styled independently by passing lists of values |
| to *lineoffsets*, *linelengths*, *linewidths*, *colors* and |
| *linestyles*. |
| |
| Note that *positions* can be a 2D array, but in practice different |
| event groups usually have different counts so that one will use a |
| list of different-length arrays rather than a 2D array. |
| |
| orientation : {'horizontal', 'vertical'}, default: 'horizontal' |
| The direction of the event sequence: |
| |
| - 'horizontal': the events are arranged horizontally. |
| The indicator lines are vertical. |
| - 'vertical': the events are arranged vertically. |
| The indicator lines are horizontal. |
| |
| lineoffsets : float or array-like, default: 1 |
| The offset of the center of the lines from the origin, in the |
| direction orthogonal to *orientation*. |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| linelengths : float or array-like, default: 1 |
| The total height of the lines (i.e. the lines stretches from |
| ``lineoffset - linelength/2`` to ``lineoffset + linelength/2``). |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| linewidths : float or array-like, default: :rc:`lines.linewidth` |
| The line width(s) of the event lines, in points. |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| colors : color or list of colors, default: :rc:`lines.color` |
| The color(s) of the event lines. |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| alpha : float or array-like, default: 1 |
| The alpha blending value(s), between 0 (transparent) and 1 |
| (opaque). |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| linestyles : str or tuple or list of such values, default: 'solid' |
| Default is 'solid'. Valid strings are ['solid', 'dashed', |
| 'dashdot', 'dotted', '-', '--', '-.', ':']. Dash tuples |
| should be of the form:: |
| |
| (offset, onoffseq), |
| |
| where *onoffseq* is an even length tuple of on and off ink |
| in points. |
| |
| If *positions* is 2D, this can be a sequence with length matching |
| the length of *positions*. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Other keyword arguments are line collection properties. See |
| `.LineCollection` for a list of the valid properties. |
| |
| Returns |
| ------- |
| list of `.EventCollection` |
| The `.EventCollection` that were added. |
| |
| Notes |
| ----- |
| For *linelengths*, *linewidths*, *colors*, *alpha* and *linestyles*, if |
| only a single value is given, that value is applied to all lines. If an |
| array-like is given, it must have the same length as *positions*, and |
| each value will be applied to the corresponding row of the array. |
| |
| Examples |
| -------- |
| .. plot:: gallery/lines_bars_and_markers/eventplot_demo.py |
| """ |
|
|
| lineoffsets, linelengths = self._process_unit_info( |
| [("y", lineoffsets), ("y", linelengths)], kwargs) |
|
|
| |
| if not np.iterable(positions): |
| positions = [positions] |
| elif any(np.iterable(position) for position in positions): |
| positions = [np.asanyarray(position) for position in positions] |
| else: |
| positions = [np.asanyarray(positions)] |
|
|
| poss = [] |
| for position in positions: |
| poss += self._process_unit_info([("x", position)], kwargs) |
| positions = poss |
|
|
| |
| |
| colors = cbook._local_over_kwdict(colors, kwargs, 'color') |
| linewidths = cbook._local_over_kwdict(linewidths, kwargs, 'linewidth') |
| linestyles = cbook._local_over_kwdict(linestyles, kwargs, 'linestyle') |
|
|
| if not np.iterable(lineoffsets): |
| lineoffsets = [lineoffsets] |
| if not np.iterable(linelengths): |
| linelengths = [linelengths] |
| if not np.iterable(linewidths): |
| linewidths = [linewidths] |
| if not np.iterable(colors): |
| colors = [colors] |
| if not np.iterable(alpha): |
| alpha = [alpha] |
| if hasattr(linestyles, 'lower') or not np.iterable(linestyles): |
| linestyles = [linestyles] |
|
|
| lineoffsets = np.asarray(lineoffsets) |
| linelengths = np.asarray(linelengths) |
| linewidths = np.asarray(linewidths) |
|
|
| if len(lineoffsets) == 0: |
| raise ValueError('lineoffsets cannot be empty') |
| if len(linelengths) == 0: |
| raise ValueError('linelengths cannot be empty') |
| if len(linestyles) == 0: |
| raise ValueError('linestyles cannot be empty') |
| if len(linewidths) == 0: |
| raise ValueError('linewidths cannot be empty') |
| if len(alpha) == 0: |
| raise ValueError('alpha cannot be empty') |
| if len(colors) == 0: |
| colors = [None] |
| try: |
| |
| |
| colors = mcolors.to_rgba_array(colors) |
| except ValueError: |
| |
| |
| |
| pass |
|
|
| if len(lineoffsets) == 1 and len(positions) != 1: |
| lineoffsets = np.tile(lineoffsets, len(positions)) |
| lineoffsets[0] = 0 |
| lineoffsets = np.cumsum(lineoffsets) |
| if len(linelengths) == 1: |
| linelengths = np.tile(linelengths, len(positions)) |
| if len(linewidths) == 1: |
| linewidths = np.tile(linewidths, len(positions)) |
| if len(colors) == 1: |
| colors = list(colors) * len(positions) |
| if len(alpha) == 1: |
| alpha = list(alpha) * len(positions) |
| if len(linestyles) == 1: |
| linestyles = [linestyles] * len(positions) |
|
|
| if len(lineoffsets) != len(positions): |
| raise ValueError('lineoffsets and positions are unequal sized ' |
| 'sequences') |
| if len(linelengths) != len(positions): |
| raise ValueError('linelengths and positions are unequal sized ' |
| 'sequences') |
| if len(linewidths) != len(positions): |
| raise ValueError('linewidths and positions are unequal sized ' |
| 'sequences') |
| if len(colors) != len(positions): |
| raise ValueError('colors and positions are unequal sized ' |
| 'sequences') |
| if len(alpha) != len(positions): |
| raise ValueError('alpha and positions are unequal sized ' |
| 'sequences') |
| if len(linestyles) != len(positions): |
| raise ValueError('linestyles and positions are unequal sized ' |
| 'sequences') |
|
|
| colls = [] |
| for position, lineoffset, linelength, linewidth, color, alpha_, \ |
| linestyle in \ |
| zip(positions, lineoffsets, linelengths, linewidths, |
| colors, alpha, linestyles): |
| coll = mcoll.EventCollection(position, |
| orientation=orientation, |
| lineoffset=lineoffset, |
| linelength=linelength, |
| linewidth=linewidth, |
| color=color, |
| alpha=alpha_, |
| linestyle=linestyle) |
| self.add_collection(coll, autolim=False) |
| coll._internal_update(kwargs) |
| colls.append(coll) |
|
|
| if len(positions) > 0: |
| |
| min_max = [(np.min(_p), np.max(_p)) for _p in positions |
| if len(_p) > 0] |
| |
| if len(min_max) > 0: |
| mins, maxes = zip(*min_max) |
| minpos = np.min(mins) |
| maxpos = np.max(maxes) |
|
|
| minline = (lineoffsets - linelengths).min() |
| maxline = (lineoffsets + linelengths).max() |
|
|
| if orientation == "vertical": |
| corners = (minline, minpos), (maxline, maxpos) |
| else: |
| corners = (minpos, minline), (maxpos, maxline) |
| self.update_datalim(corners) |
| self._request_autoscale_view() |
|
|
| return colls |
|
|
| |
|
|
| |
| |
| @_docstring.dedent_interpd |
| def plot(self, *args, scalex=True, scaley=True, data=None, **kwargs): |
| """ |
| Plot y versus x as lines and/or markers. |
| |
| Call signatures:: |
| |
| plot([x], y, [fmt], *, data=None, **kwargs) |
| plot([x], y, [fmt], [x2], y2, [fmt2], ..., **kwargs) |
| |
| The coordinates of the points or line nodes are given by *x*, *y*. |
| |
| The optional parameter *fmt* is a convenient way for defining basic |
| formatting like color, marker and linestyle. It's a shortcut string |
| notation described in the *Notes* section below. |
| |
| >>> plot(x, y) # plot x and y using default line style and color |
| >>> plot(x, y, 'bo') # plot x and y using blue circle markers |
| >>> plot(y) # plot y using x as index array 0..N-1 |
| >>> plot(y, 'r+') # ditto, but with red plusses |
| |
| You can use `.Line2D` properties as keyword arguments for more |
| control on the appearance. Line properties and *fmt* can be mixed. |
| The following two calls yield identical results: |
| |
| >>> plot(x, y, 'go--', linewidth=2, markersize=12) |
| >>> plot(x, y, color='green', marker='o', linestyle='dashed', |
| ... linewidth=2, markersize=12) |
| |
| When conflicting with *fmt*, keyword arguments take precedence. |
| |
| |
| **Plotting labelled data** |
| |
| There's a convenient way for plotting objects with labelled data (i.e. |
| data that can be accessed by index ``obj['y']``). Instead of giving |
| the data in *x* and *y*, you can provide the object in the *data* |
| parameter and just give the labels for *x* and *y*:: |
| |
| >>> plot('xlabel', 'ylabel', data=obj) |
| |
| All indexable objects are supported. This could e.g. be a `dict`, a |
| `pandas.DataFrame` or a structured numpy array. |
| |
| |
| **Plotting multiple sets of data** |
| |
| There are various ways to plot multiple sets of data. |
| |
| - The most straight forward way is just to call `plot` multiple times. |
| Example: |
| |
| >>> plot(x1, y1, 'bo') |
| >>> plot(x2, y2, 'go') |
| |
| - If *x* and/or *y* are 2D arrays a separate data set will be drawn |
| for every column. If both *x* and *y* are 2D, they must have the |
| same shape. If only one of them is 2D with shape (N, m) the other |
| must have length N and will be used for every data set m. |
| |
| Example: |
| |
| >>> x = [1, 2, 3] |
| >>> y = np.array([[1, 2], [3, 4], [5, 6]]) |
| >>> plot(x, y) |
| |
| is equivalent to: |
| |
| >>> for col in range(y.shape[1]): |
| ... plot(x, y[:, col]) |
| |
| - The third way is to specify multiple sets of *[x]*, *y*, *[fmt]* |
| groups:: |
| |
| >>> plot(x1, y1, 'g^', x2, y2, 'g-') |
| |
| In this case, any additional keyword argument applies to all |
| datasets. Also, this syntax cannot be combined with the *data* |
| parameter. |
| |
| By default, each line is assigned a different style specified by a |
| 'style cycle'. The *fmt* and line property parameters are only |
| necessary if you want explicit deviations from these defaults. |
| Alternatively, you can also change the style cycle using |
| :rc:`axes.prop_cycle`. |
| |
| |
| Parameters |
| ---------- |
| x, y : array-like or scalar |
| The horizontal / vertical coordinates of the data points. |
| *x* values are optional and default to ``range(len(y))``. |
| |
| Commonly, these parameters are 1D arrays. |
| |
| They can also be scalars, or two-dimensional (in that case, the |
| columns represent separate data sets). |
| |
| These arguments cannot be passed as keywords. |
| |
| fmt : str, optional |
| A format string, e.g. 'ro' for red circles. See the *Notes* |
| section for a full description of the format strings. |
| |
| Format strings are just an abbreviation for quickly setting |
| basic line properties. All of these and more can also be |
| controlled by keyword arguments. |
| |
| This argument cannot be passed as keyword. |
| |
| data : indexable object, optional |
| An object with labelled data. If given, provide the label names to |
| plot in *x* and *y*. |
| |
| .. note:: |
| Technically there's a slight ambiguity in calls where the |
| second label is a valid *fmt*. ``plot('n', 'o', data=obj)`` |
| could be ``plt(x, y)`` or ``plt(y, fmt)``. In such cases, |
| the former interpretation is chosen, but a warning is issued. |
| You may suppress the warning by adding an empty format string |
| ``plot('n', 'o', '', data=obj)``. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| A list of lines representing the plotted data. |
| |
| Other Parameters |
| ---------------- |
| scalex, scaley : bool, default: True |
| These parameters determine if the view limits are adapted to the |
| data limits. The values are passed on to |
| `~.axes.Axes.autoscale_view`. |
| |
| **kwargs : `~matplotlib.lines.Line2D` properties, optional |
| *kwargs* are used to specify properties like a line label (for |
| auto legends), linewidth, antialiasing, marker face color. |
| Example:: |
| |
| >>> plot([1, 2, 3], [1, 2, 3], 'go-', label='line 1', linewidth=2) |
| >>> plot([1, 2, 3], [1, 4, 9], 'rs', label='line 2') |
| |
| If you specify multiple lines with one plot call, the kwargs apply |
| to all those lines. In case the label object is iterable, each |
| element is used as labels for each set of data. |
| |
| Here is a list of available `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| scatter : XY scatter plot with markers of varying size and/or color ( |
| sometimes also called bubble chart). |
| |
| Notes |
| ----- |
| **Format Strings** |
| |
| A format string consists of a part for color, marker and line:: |
| |
| fmt = '[marker][line][color]' |
| |
| Each of them is optional. If not provided, the value from the style |
| cycle is used. Exception: If ``line`` is given, but no ``marker``, |
| the data will be a line without markers. |
| |
| Other combinations such as ``[color][marker][line]`` are also |
| supported, but note that their parsing may be ambiguous. |
| |
| **Markers** |
| |
| ============= =============================== |
| character description |
| ============= =============================== |
| ``'.'`` point marker |
| ``','`` pixel marker |
| ``'o'`` circle marker |
| ``'v'`` triangle_down marker |
| ``'^'`` triangle_up marker |
| ``'<'`` triangle_left marker |
| ``'>'`` triangle_right marker |
| ``'1'`` tri_down marker |
| ``'2'`` tri_up marker |
| ``'3'`` tri_left marker |
| ``'4'`` tri_right marker |
| ``'8'`` octagon marker |
| ``'s'`` square marker |
| ``'p'`` pentagon marker |
| ``'P'`` plus (filled) marker |
| ``'*'`` star marker |
| ``'h'`` hexagon1 marker |
| ``'H'`` hexagon2 marker |
| ``'+'`` plus marker |
| ``'x'`` x marker |
| ``'X'`` x (filled) marker |
| ``'D'`` diamond marker |
| ``'d'`` thin_diamond marker |
| ``'|'`` vline marker |
| ``'_'`` hline marker |
| ============= =============================== |
| |
| **Line Styles** |
| |
| ============= =============================== |
| character description |
| ============= =============================== |
| ``'-'`` solid line style |
| ``'--'`` dashed line style |
| ``'-.'`` dash-dot line style |
| ``':'`` dotted line style |
| ============= =============================== |
| |
| Example format strings:: |
| |
| 'b' # blue markers with default shape |
| 'or' # red circles |
| '-g' # green solid line |
| '--' # dashed line with default color |
| '^k:' # black triangle_up markers connected by a dotted line |
| |
| **Colors** |
| |
| The supported color abbreviations are the single letter codes |
| |
| ============= =============================== |
| character color |
| ============= =============================== |
| ``'b'`` blue |
| ``'g'`` green |
| ``'r'`` red |
| ``'c'`` cyan |
| ``'m'`` magenta |
| ``'y'`` yellow |
| ``'k'`` black |
| ``'w'`` white |
| ============= =============================== |
| |
| and the ``'CN'`` colors that index into the default property cycle. |
| |
| If the color is the only part of the format string, you can |
| additionally use any `matplotlib.colors` spec, e.g. full names |
| (``'green'``) or hex strings (``'#008000'``). |
| """ |
| kwargs = cbook.normalize_kwargs(kwargs, mlines.Line2D) |
| lines = [*self._get_lines(self, *args, data=data, **kwargs)] |
| for line in lines: |
| self.add_line(line) |
| if scalex: |
| self._request_autoscale_view("x") |
| if scaley: |
| self._request_autoscale_view("y") |
| return lines |
|
|
| @_preprocess_data(replace_names=["x", "y"], label_namer="y") |
| @_docstring.dedent_interpd |
| def plot_date(self, x, y, fmt='o', tz=None, xdate=True, ydate=False, |
| **kwargs): |
| """ |
| [*Discouraged*] Plot coercing the axis to treat floats as dates. |
| |
| .. admonition:: Discouraged |
| |
| This method exists for historic reasons and will be deprecated in |
| the future. |
| |
| - ``datetime``-like data should directly be plotted using |
| `~.Axes.plot`. |
| - If you need to plot plain numeric data as :ref:`date-format` or |
| need to set a timezone, call ``ax.xaxis.axis_date`` / |
| ``ax.yaxis.axis_date`` before `~.Axes.plot`. See |
| `.Axis.axis_date`. |
| |
| Similar to `.plot`, this plots *y* vs. *x* as lines or markers. |
| However, the axis labels are formatted as dates depending on *xdate* |
| and *ydate*. Note that `.plot` will work with `datetime` and |
| `numpy.datetime64` objects without resorting to this method. |
| |
| Parameters |
| ---------- |
| x, y : array-like |
| The coordinates of the data points. If *xdate* or *ydate* is |
| *True*, the respective values *x* or *y* are interpreted as |
| :ref:`Matplotlib dates <date-format>`. |
| |
| fmt : str, optional |
| The plot format string. For details, see the corresponding |
| parameter in `.plot`. |
| |
| tz : timezone string or `datetime.tzinfo`, default: :rc:`timezone` |
| The time zone to use in labeling dates. |
| |
| xdate : bool, default: True |
| If *True*, the *x*-axis will be interpreted as Matplotlib dates. |
| |
| ydate : bool, default: False |
| If *True*, the *y*-axis will be interpreted as Matplotlib dates. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| Objects representing the plotted data. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| matplotlib.dates : Helper functions on dates. |
| matplotlib.dates.date2num : Convert dates to num. |
| matplotlib.dates.num2date : Convert num to dates. |
| matplotlib.dates.drange : Create an equally spaced sequence of dates. |
| |
| Notes |
| ----- |
| If you are using custom date tickers and formatters, it may be |
| necessary to set the formatters/locators after the call to |
| `.plot_date`. `.plot_date` will set the default tick locator to |
| `.AutoDateLocator` (if the tick locator is not already set to a |
| `.DateLocator` instance) and the default tick formatter to |
| `.AutoDateFormatter` (if the tick formatter is not already set to a |
| `.DateFormatter` instance). |
| """ |
| if xdate: |
| self.xaxis_date(tz) |
| if ydate: |
| self.yaxis_date(tz) |
| return self.plot(x, y, fmt, **kwargs) |
|
|
| |
| @_docstring.dedent_interpd |
| def loglog(self, *args, **kwargs): |
| """ |
| Make a plot with log scaling on both the x- and y-axis. |
| |
| Call signatures:: |
| |
| loglog([x], y, [fmt], data=None, **kwargs) |
| loglog([x], y, [fmt], [x2], y2, [fmt2], ..., **kwargs) |
| |
| This is just a thin wrapper around `.plot` which additionally changes |
| both the x-axis and the y-axis to log scaling. All the concepts and |
| parameters of plot can be used here as well. |
| |
| The additional parameters *base*, *subs* and *nonpositive* control the |
| x/y-axis properties. They are just forwarded to `.Axes.set_xscale` and |
| `.Axes.set_yscale`. To use different properties on the x-axis and the |
| y-axis, use e.g. |
| ``ax.set_xscale("log", base=10); ax.set_yscale("log", base=2)``. |
| |
| Parameters |
| ---------- |
| base : float, default: 10 |
| Base of the logarithm. |
| |
| subs : sequence, optional |
| The location of the minor ticks. If *None*, reasonable locations |
| are automatically chosen depending on the number of decades in the |
| plot. See `.Axes.set_xscale`/`.Axes.set_yscale` for details. |
| |
| nonpositive : {'mask', 'clip'}, default: 'clip' |
| Non-positive values can be masked as invalid, or clipped to a very |
| small positive number. |
| |
| **kwargs |
| All parameters supported by `.plot`. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| Objects representing the plotted data. |
| """ |
| dx = {k: v for k, v in kwargs.items() |
| if k in ['base', 'subs', 'nonpositive', |
| 'basex', 'subsx', 'nonposx']} |
| self.set_xscale('log', **dx) |
| dy = {k: v for k, v in kwargs.items() |
| if k in ['base', 'subs', 'nonpositive', |
| 'basey', 'subsy', 'nonposy']} |
| self.set_yscale('log', **dy) |
| return self.plot( |
| *args, **{k: v for k, v in kwargs.items() if k not in {*dx, *dy}}) |
|
|
| |
| @_docstring.dedent_interpd |
| def semilogx(self, *args, **kwargs): |
| """ |
| Make a plot with log scaling on the x-axis. |
| |
| Call signatures:: |
| |
| semilogx([x], y, [fmt], data=None, **kwargs) |
| semilogx([x], y, [fmt], [x2], y2, [fmt2], ..., **kwargs) |
| |
| This is just a thin wrapper around `.plot` which additionally changes |
| the x-axis to log scaling. All the concepts and parameters of plot can |
| be used here as well. |
| |
| The additional parameters *base*, *subs*, and *nonpositive* control the |
| x-axis properties. They are just forwarded to `.Axes.set_xscale`. |
| |
| Parameters |
| ---------- |
| base : float, default: 10 |
| Base of the x logarithm. |
| |
| subs : array-like, optional |
| The location of the minor xticks. If *None*, reasonable locations |
| are automatically chosen depending on the number of decades in the |
| plot. See `.Axes.set_xscale` for details. |
| |
| nonpositive : {'mask', 'clip'}, default: 'clip' |
| Non-positive values in x can be masked as invalid, or clipped to a |
| very small positive number. |
| |
| **kwargs |
| All parameters supported by `.plot`. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| Objects representing the plotted data. |
| """ |
| d = {k: v for k, v in kwargs.items() |
| if k in ['base', 'subs', 'nonpositive', |
| 'basex', 'subsx', 'nonposx']} |
| self.set_xscale('log', **d) |
| return self.plot( |
| *args, **{k: v for k, v in kwargs.items() if k not in d}) |
|
|
| |
| @_docstring.dedent_interpd |
| def semilogy(self, *args, **kwargs): |
| """ |
| Make a plot with log scaling on the y-axis. |
| |
| Call signatures:: |
| |
| semilogy([x], y, [fmt], data=None, **kwargs) |
| semilogy([x], y, [fmt], [x2], y2, [fmt2], ..., **kwargs) |
| |
| This is just a thin wrapper around `.plot` which additionally changes |
| the y-axis to log scaling. All the concepts and parameters of plot can |
| be used here as well. |
| |
| The additional parameters *base*, *subs*, and *nonpositive* control the |
| y-axis properties. They are just forwarded to `.Axes.set_yscale`. |
| |
| Parameters |
| ---------- |
| base : float, default: 10 |
| Base of the y logarithm. |
| |
| subs : array-like, optional |
| The location of the minor yticks. If *None*, reasonable locations |
| are automatically chosen depending on the number of decades in the |
| plot. See `.Axes.set_yscale` for details. |
| |
| nonpositive : {'mask', 'clip'}, default: 'clip' |
| Non-positive values in y can be masked as invalid, or clipped to a |
| very small positive number. |
| |
| **kwargs |
| All parameters supported by `.plot`. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| Objects representing the plotted data. |
| """ |
| d = {k: v for k, v in kwargs.items() |
| if k in ['base', 'subs', 'nonpositive', |
| 'basey', 'subsy', 'nonposy']} |
| self.set_yscale('log', **d) |
| return self.plot( |
| *args, **{k: v for k, v in kwargs.items() if k not in d}) |
|
|
| @_preprocess_data(replace_names=["x"], label_namer="x") |
| def acorr(self, x, **kwargs): |
| """ |
| Plot the autocorrelation of *x*. |
| |
| Parameters |
| ---------- |
| x : array-like |
| |
| detrend : callable, default: `.mlab.detrend_none` (no detrending) |
| A detrending function applied to *x*. It must have the |
| signature :: |
| |
| detrend(x: np.ndarray) -> np.ndarray |
| |
| normed : bool, default: True |
| If ``True``, input vectors are normalised to unit length. |
| |
| usevlines : bool, default: True |
| Determines the plot style. |
| |
| If ``True``, vertical lines are plotted from 0 to the acorr value |
| using `.Axes.vlines`. Additionally, a horizontal line is plotted |
| at y=0 using `.Axes.axhline`. |
| |
| If ``False``, markers are plotted at the acorr values using |
| `.Axes.plot`. |
| |
| maxlags : int, default: 10 |
| Number of lags to show. If ``None``, will return all |
| ``2 * len(x) - 1`` lags. |
| |
| Returns |
| ------- |
| lags : array (length ``2*maxlags+1``) |
| The lag vector. |
| c : array (length ``2*maxlags+1``) |
| The auto correlation vector. |
| line : `.LineCollection` or `.Line2D` |
| `.Artist` added to the Axes of the correlation: |
| |
| - `.LineCollection` if *usevlines* is True. |
| - `.Line2D` if *usevlines* is False. |
| b : `~matplotlib.lines.Line2D` or None |
| Horizontal line at 0 if *usevlines* is True |
| None *usevlines* is False. |
| |
| Other Parameters |
| ---------------- |
| linestyle : `~matplotlib.lines.Line2D` property, optional |
| The linestyle for plotting the data points. |
| Only used if *usevlines* is ``False``. |
| |
| marker : str, default: 'o' |
| The marker for plotting the data points. |
| Only used if *usevlines* is ``False``. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additional parameters are passed to `.Axes.vlines` and |
| `.Axes.axhline` if *usevlines* is ``True``; otherwise they are |
| passed to `.Axes.plot`. |
| |
| Notes |
| ----- |
| The cross correlation is performed with `numpy.correlate` with |
| ``mode = "full"``. |
| """ |
| return self.xcorr(x, x, **kwargs) |
|
|
| @_preprocess_data(replace_names=["x", "y"], label_namer="y") |
| def xcorr(self, x, y, normed=True, detrend=mlab.detrend_none, |
| usevlines=True, maxlags=10, **kwargs): |
| r""" |
| Plot the cross correlation between *x* and *y*. |
| |
| The correlation with lag k is defined as |
| :math:`\sum_n x[n+k] \cdot y^*[n]`, where :math:`y^*` is the complex |
| conjugate of :math:`y`. |
| |
| Parameters |
| ---------- |
| x, y : array-like of length n |
| |
| detrend : callable, default: `.mlab.detrend_none` (no detrending) |
| A detrending function applied to *x* and *y*. It must have the |
| signature :: |
| |
| detrend(x: np.ndarray) -> np.ndarray |
| |
| normed : bool, default: True |
| If ``True``, input vectors are normalised to unit length. |
| |
| usevlines : bool, default: True |
| Determines the plot style. |
| |
| If ``True``, vertical lines are plotted from 0 to the xcorr value |
| using `.Axes.vlines`. Additionally, a horizontal line is plotted |
| at y=0 using `.Axes.axhline`. |
| |
| If ``False``, markers are plotted at the xcorr values using |
| `.Axes.plot`. |
| |
| maxlags : int, default: 10 |
| Number of lags to show. If None, will return all ``2 * len(x) - 1`` |
| lags. |
| |
| Returns |
| ------- |
| lags : array (length ``2*maxlags+1``) |
| The lag vector. |
| c : array (length ``2*maxlags+1``) |
| The auto correlation vector. |
| line : `.LineCollection` or `.Line2D` |
| `.Artist` added to the Axes of the correlation: |
| |
| - `.LineCollection` if *usevlines* is True. |
| - `.Line2D` if *usevlines* is False. |
| b : `~matplotlib.lines.Line2D` or None |
| Horizontal line at 0 if *usevlines* is True |
| None *usevlines* is False. |
| |
| Other Parameters |
| ---------------- |
| linestyle : `~matplotlib.lines.Line2D` property, optional |
| The linestyle for plotting the data points. |
| Only used if *usevlines* is ``False``. |
| |
| marker : str, default: 'o' |
| The marker for plotting the data points. |
| Only used if *usevlines* is ``False``. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additional parameters are passed to `.Axes.vlines` and |
| `.Axes.axhline` if *usevlines* is ``True``; otherwise they are |
| passed to `.Axes.plot`. |
| |
| Notes |
| ----- |
| The cross correlation is performed with `numpy.correlate` with |
| ``mode = "full"``. |
| """ |
| Nx = len(x) |
| if Nx != len(y): |
| raise ValueError('x and y must be equal length') |
|
|
| x = detrend(np.asarray(x)) |
| y = detrend(np.asarray(y)) |
|
|
| correls = np.correlate(x, y, mode="full") |
|
|
| if normed: |
| correls = correls / np.sqrt(np.dot(x, x) * np.dot(y, y)) |
|
|
| if maxlags is None: |
| maxlags = Nx - 1 |
|
|
| if maxlags >= Nx or maxlags < 1: |
| raise ValueError('maxlags must be None or strictly ' |
| 'positive < %d' % Nx) |
|
|
| lags = np.arange(-maxlags, maxlags + 1) |
| correls = correls[Nx - 1 - maxlags:Nx + maxlags] |
|
|
| if usevlines: |
| a = self.vlines(lags, [0], correls, **kwargs) |
| |
| kwargs.pop('label', '') |
| b = self.axhline(**kwargs) |
| else: |
| kwargs.setdefault('marker', 'o') |
| kwargs.setdefault('linestyle', 'None') |
| a, = self.plot(lags, correls, **kwargs) |
| b = None |
| return lags, correls, a, b |
|
|
| |
|
|
| |
| def step(self, x, y, *args, where='pre', data=None, **kwargs): |
| """ |
| Make a step plot. |
| |
| Call signatures:: |
| |
| step(x, y, [fmt], *, data=None, where='pre', **kwargs) |
| step(x, y, [fmt], x2, y2, [fmt2], ..., *, where='pre', **kwargs) |
| |
| This is just a thin wrapper around `.plot` which changes some |
| formatting options. Most of the concepts and parameters of plot can be |
| used here as well. |
| |
| .. note:: |
| |
| This method uses a standard plot with a step drawstyle: The *x* |
| values are the reference positions and steps extend left/right/both |
| directions depending on *where*. |
| |
| For the common case where you know the values and edges of the |
| steps, use `~.Axes.stairs` instead. |
| |
| Parameters |
| ---------- |
| x : array-like |
| 1D sequence of x positions. It is assumed, but not checked, that |
| it is uniformly increasing. |
| |
| y : array-like |
| 1D sequence of y levels. |
| |
| fmt : str, optional |
| A format string, e.g. 'g' for a green line. See `.plot` for a more |
| detailed description. |
| |
| Note: While full format strings are accepted, it is recommended to |
| only specify the color. Line styles are currently ignored (use |
| the keyword argument *linestyle* instead). Markers are accepted |
| and plotted on the given positions, however, this is a rarely |
| needed feature for step plots. |
| |
| where : {'pre', 'post', 'mid'}, default: 'pre' |
| Define where the steps should be placed: |
| |
| - 'pre': The y value is continued constantly to the left from |
| every *x* position, i.e. the interval ``(x[i-1], x[i]]`` has the |
| value ``y[i]``. |
| - 'post': The y value is continued constantly to the right from |
| every *x* position, i.e. the interval ``[x[i], x[i+1])`` has the |
| value ``y[i]``. |
| - 'mid': Steps occur half-way between the *x* positions. |
| |
| data : indexable object, optional |
| An object with labelled data. If given, provide the label names to |
| plot in *x* and *y*. |
| |
| **kwargs |
| Additional parameters are the same as those for `.plot`. |
| |
| Returns |
| ------- |
| list of `.Line2D` |
| Objects representing the plotted data. |
| """ |
| _api.check_in_list(('pre', 'post', 'mid'), where=where) |
| kwargs['drawstyle'] = 'steps-' + where |
| return self.plot(x, y, *args, data=data, **kwargs) |
|
|
| @staticmethod |
| def _convert_dx(dx, x0, xconv, convert): |
| """ |
| Small helper to do logic of width conversion flexibly. |
| |
| *dx* and *x0* have units, but *xconv* has already been converted |
| to unitless (and is an ndarray). This allows the *dx* to have units |
| that are different from *x0*, but are still accepted by the |
| ``__add__`` operator of *x0*. |
| """ |
|
|
| |
| assert type(xconv) is np.ndarray |
|
|
| if xconv.size == 0: |
| |
| return convert(dx) |
|
|
| try: |
| |
| |
|
|
| |
| |
| |
| |
| |
| |
| |
| try: |
| x0 = cbook._safe_first_finite(x0) |
| except (TypeError, IndexError, KeyError): |
| pass |
|
|
| try: |
| x = cbook._safe_first_finite(xconv) |
| except (TypeError, IndexError, KeyError): |
| x = xconv |
|
|
| delist = False |
| if not np.iterable(dx): |
| dx = [dx] |
| delist = True |
| dx = [convert(x0 + ddx) - x for ddx in dx] |
| if delist: |
| dx = dx[0] |
| except (ValueError, TypeError, AttributeError): |
| |
| |
| dx = convert(dx) |
| return dx |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def bar(self, x, height, width=0.8, bottom=None, *, align="center", |
| **kwargs): |
| r""" |
| Make a bar plot. |
| |
| The bars are positioned at *x* with the given *align*\ment. Their |
| dimensions are given by *height* and *width*. The vertical baseline |
| is *bottom* (default 0). |
| |
| Many parameters can take either a single value applying to all bars |
| or a sequence of values, one for each bar. |
| |
| Parameters |
| ---------- |
| x : float or array-like |
| The x coordinates of the bars. See also *align* for the |
| alignment of the bars to the coordinates. |
| |
| height : float or array-like |
| The height(s) of the bars. |
| |
| Note that if *bottom* has units (e.g. datetime), *height* should be in |
| units that are a difference from the value of *bottom* (e.g. timedelta). |
| |
| width : float or array-like, default: 0.8 |
| The width(s) of the bars. |
| |
| Note that if *x* has units (e.g. datetime), then *width* should be in |
| units that are a difference (e.g. timedelta) around the *x* values. |
| |
| bottom : float or array-like, default: 0 |
| The y coordinate(s) of the bottom side(s) of the bars. |
| |
| Note that if *bottom* has units, then the y-axis will get a Locator and |
| Formatter appropriate for the units (e.g. dates, or categorical). |
| |
| align : {'center', 'edge'}, default: 'center' |
| Alignment of the bars to the *x* coordinates: |
| |
| - 'center': Center the base on the *x* positions. |
| - 'edge': Align the left edges of the bars with the *x* positions. |
| |
| To align the bars on the right edge pass a negative *width* and |
| ``align='edge'``. |
| |
| Returns |
| ------- |
| `.BarContainer` |
| Container with all the bars and optionally errorbars. |
| |
| Other Parameters |
| ---------------- |
| color : color or list of color, optional |
| The colors of the bar faces. |
| |
| edgecolor : color or list of color, optional |
| The colors of the bar edges. |
| |
| linewidth : float or array-like, optional |
| Width of the bar edge(s). If 0, don't draw edges. |
| |
| tick_label : str or list of str, optional |
| The tick labels of the bars. |
| Default: None (Use default numeric labels.) |
| |
| label : str or list of str, optional |
| A single label is attached to the resulting `.BarContainer` as a |
| label for the whole dataset. |
| If a list is provided, it must be the same length as *x* and |
| labels the individual bars. Repeated labels are not de-duplicated |
| and will cause repeated label entries, so this is best used when |
| bars also differ in style (e.g., by passing a list to *color*.) |
| |
| xerr, yerr : float or array-like of shape(N,) or shape(2, N), optional |
| If not *None*, add horizontal / vertical errorbars to the bar tips. |
| The values are +/- sizes relative to the data: |
| |
| - scalar: symmetric +/- values for all bars |
| - shape(N,): symmetric +/- values for each bar |
| - shape(2, N): Separate - and + values for each bar. First row |
| contains the lower errors, the second row contains the upper |
| errors. |
| - *None*: No errorbar. (Default) |
| |
| See :doc:`/gallery/statistics/errorbar_features` for an example on |
| the usage of *xerr* and *yerr*. |
| |
| ecolor : color or list of color, default: 'black' |
| The line color of the errorbars. |
| |
| capsize : float, default: :rc:`errorbar.capsize` |
| The length of the error bar caps in points. |
| |
| error_kw : dict, optional |
| Dictionary of keyword arguments to be passed to the |
| `~.Axes.errorbar` method. Values of *ecolor* or *capsize* defined |
| here take precedence over the independent keyword arguments. |
| |
| log : bool, default: False |
| If *True*, set the y-axis to be log scale. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs : `.Rectangle` properties |
| |
| %(Rectangle:kwdoc)s |
| |
| See Also |
| -------- |
| barh : Plot a horizontal bar plot. |
| |
| Notes |
| ----- |
| Stacked bars can be achieved by passing individual *bottom* values per |
| bar. See :doc:`/gallery/lines_bars_and_markers/bar_stacked`. |
| """ |
| kwargs = cbook.normalize_kwargs(kwargs, mpatches.Patch) |
| color = kwargs.pop('color', None) |
| if color is None: |
| color = self._get_patches_for_fill.get_next_color() |
| edgecolor = kwargs.pop('edgecolor', None) |
| linewidth = kwargs.pop('linewidth', None) |
| hatch = kwargs.pop('hatch', None) |
|
|
| |
| |
| xerr = kwargs.pop('xerr', None) |
| yerr = kwargs.pop('yerr', None) |
| error_kw = kwargs.pop('error_kw', {}) |
| ezorder = error_kw.pop('zorder', None) |
| if ezorder is None: |
| ezorder = kwargs.get('zorder', None) |
| if ezorder is not None: |
| |
| |
| ezorder += 0.01 |
| error_kw.setdefault('zorder', ezorder) |
| ecolor = kwargs.pop('ecolor', 'k') |
| capsize = kwargs.pop('capsize', mpl.rcParams["errorbar.capsize"]) |
| error_kw.setdefault('ecolor', ecolor) |
| error_kw.setdefault('capsize', capsize) |
|
|
| |
| |
| |
| orientation = kwargs.pop('orientation', 'vertical') |
| _api.check_in_list(['vertical', 'horizontal'], orientation=orientation) |
| log = kwargs.pop('log', False) |
| label = kwargs.pop('label', '') |
| tick_labels = kwargs.pop('tick_label', None) |
|
|
| y = bottom |
| if orientation == 'vertical': |
| if y is None: |
| y = 0 |
| else: |
| if x is None: |
| x = 0 |
|
|
| if orientation == 'vertical': |
| |
| |
| |
| self._process_unit_info( |
| [("x", x), ("y", y), ("y", height)], kwargs, convert=False) |
| if log: |
| self.set_yscale('log', nonpositive='clip') |
| else: |
| |
| |
| |
| self._process_unit_info( |
| [("x", x), ("x", width), ("y", y)], kwargs, convert=False) |
| if log: |
| self.set_xscale('log', nonpositive='clip') |
|
|
| |
| |
| if self.xaxis is not None: |
| x0 = x |
| x = np.asarray(self.convert_xunits(x)) |
| width = self._convert_dx(width, x0, x, self.convert_xunits) |
| if xerr is not None: |
| xerr = self._convert_dx(xerr, x0, x, self.convert_xunits) |
| if self.yaxis is not None: |
| y0 = y |
| y = np.asarray(self.convert_yunits(y)) |
| height = self._convert_dx(height, y0, y, self.convert_yunits) |
| if yerr is not None: |
| yerr = self._convert_dx(yerr, y0, y, self.convert_yunits) |
|
|
| x, height, width, y, linewidth, hatch = np.broadcast_arrays( |
| |
| np.atleast_1d(x), height, width, y, linewidth, hatch) |
|
|
| |
| if orientation == 'vertical': |
| tick_label_axis = self.xaxis |
| tick_label_position = x |
| else: |
| tick_label_axis = self.yaxis |
| tick_label_position = y |
|
|
| if not isinstance(label, str) and np.iterable(label): |
| bar_container_label = '_nolegend_' |
| patch_labels = label |
| else: |
| bar_container_label = label |
| patch_labels = ['_nolegend_'] * len(x) |
| if len(patch_labels) != len(x): |
| raise ValueError(f'number of labels ({len(patch_labels)}) ' |
| f'does not match number of bars ({len(x)}).') |
|
|
| linewidth = itertools.cycle(np.atleast_1d(linewidth)) |
| hatch = itertools.cycle(np.atleast_1d(hatch)) |
| color = itertools.chain(itertools.cycle(mcolors.to_rgba_array(color)), |
| |
| itertools.repeat('none')) |
| if edgecolor is None: |
| edgecolor = itertools.repeat(None) |
| else: |
| edgecolor = itertools.chain( |
| itertools.cycle(mcolors.to_rgba_array(edgecolor)), |
| |
| itertools.repeat('none')) |
|
|
| |
| |
| _api.check_in_list(['center', 'edge'], align=align) |
| if align == 'center': |
| if orientation == 'vertical': |
| try: |
| left = x - width / 2 |
| except TypeError as e: |
| raise TypeError(f'the dtypes of parameters x ({x.dtype}) ' |
| f'and width ({width.dtype}) ' |
| f'are incompatible') from e |
| bottom = y |
| else: |
| try: |
| bottom = y - height / 2 |
| except TypeError as e: |
| raise TypeError(f'the dtypes of parameters y ({y.dtype}) ' |
| f'and height ({height.dtype}) ' |
| f'are incompatible') from e |
| left = x |
| else: |
| left = x |
| bottom = y |
|
|
| patches = [] |
| args = zip(left, bottom, width, height, color, edgecolor, linewidth, |
| hatch, patch_labels) |
| for l, b, w, h, c, e, lw, htch, lbl in args: |
| r = mpatches.Rectangle( |
| xy=(l, b), width=w, height=h, |
| facecolor=c, |
| edgecolor=e, |
| linewidth=lw, |
| label=lbl, |
| hatch=htch, |
| ) |
| r._internal_update(kwargs) |
| r.get_path()._interpolation_steps = 100 |
| if orientation == 'vertical': |
| r.sticky_edges.y.append(b) |
| else: |
| r.sticky_edges.x.append(l) |
| self.add_patch(r) |
| patches.append(r) |
|
|
| if xerr is not None or yerr is not None: |
| if orientation == 'vertical': |
| |
| ex = [l + 0.5 * w for l, w in zip(left, width)] |
| ey = [b + h for b, h in zip(bottom, height)] |
|
|
| else: |
| |
| ex = [l + w for l, w in zip(left, width)] |
| ey = [b + 0.5 * h for b, h in zip(bottom, height)] |
|
|
| error_kw.setdefault("label", '_nolegend_') |
|
|
| errorbar = self.errorbar(ex, ey, |
| yerr=yerr, xerr=xerr, |
| fmt='none', **error_kw) |
| else: |
| errorbar = None |
|
|
| self._request_autoscale_view() |
|
|
| if orientation == 'vertical': |
| datavalues = height |
| else: |
| datavalues = width |
|
|
| bar_container = BarContainer(patches, errorbar, datavalues=datavalues, |
| orientation=orientation, |
| label=bar_container_label) |
| self.add_container(bar_container) |
|
|
| if tick_labels is not None: |
| tick_labels = np.broadcast_to(tick_labels, len(patches)) |
| tick_label_axis.set_ticks(tick_label_position) |
| tick_label_axis.set_ticklabels(tick_labels) |
|
|
| return bar_container |
|
|
| |
| @_docstring.dedent_interpd |
| def barh(self, y, width, height=0.8, left=None, *, align="center", |
| data=None, **kwargs): |
| r""" |
| Make a horizontal bar plot. |
| |
| The bars are positioned at *y* with the given *align*\ment. Their |
| dimensions are given by *width* and *height*. The horizontal baseline |
| is *left* (default 0). |
| |
| Many parameters can take either a single value applying to all bars |
| or a sequence of values, one for each bar. |
| |
| Parameters |
| ---------- |
| y : float or array-like |
| The y coordinates of the bars. See also *align* for the |
| alignment of the bars to the coordinates. |
| |
| width : float or array-like |
| The width(s) of the bars. |
| |
| Note that if *left* has units (e.g. datetime), *width* should be in |
| units that are a difference from the value of *left* (e.g. timedelta). |
| |
| height : float or array-like, default: 0.8 |
| The heights of the bars. |
| |
| Note that if *y* has units (e.g. datetime), then *height* should be in |
| units that are a difference (e.g. timedelta) around the *y* values. |
| |
| left : float or array-like, default: 0 |
| The x coordinates of the left side(s) of the bars. |
| |
| Note that if *left* has units, then the x-axis will get a Locator and |
| Formatter appropriate for the units (e.g. dates, or categorical). |
| |
| align : {'center', 'edge'}, default: 'center' |
| Alignment of the base to the *y* coordinates*: |
| |
| - 'center': Center the bars on the *y* positions. |
| - 'edge': Align the bottom edges of the bars with the *y* |
| positions. |
| |
| To align the bars on the top edge pass a negative *height* and |
| ``align='edge'``. |
| |
| Returns |
| ------- |
| `.BarContainer` |
| Container with all the bars and optionally errorbars. |
| |
| Other Parameters |
| ---------------- |
| color : color or list of color, optional |
| The colors of the bar faces. |
| |
| edgecolor : color or list of color, optional |
| The colors of the bar edges. |
| |
| linewidth : float or array-like, optional |
| Width of the bar edge(s). If 0, don't draw edges. |
| |
| tick_label : str or list of str, optional |
| The tick labels of the bars. |
| Default: None (Use default numeric labels.) |
| |
| label : str or list of str, optional |
| A single label is attached to the resulting `.BarContainer` as a |
| label for the whole dataset. |
| If a list is provided, it must be the same length as *y* and |
| labels the individual bars. Repeated labels are not de-duplicated |
| and will cause repeated label entries, so this is best used when |
| bars also differ in style (e.g., by passing a list to *color*.) |
| |
| xerr, yerr : float or array-like of shape(N,) or shape(2, N), optional |
| If not *None*, add horizontal / vertical errorbars to the bar tips. |
| The values are +/- sizes relative to the data: |
| |
| - scalar: symmetric +/- values for all bars |
| - shape(N,): symmetric +/- values for each bar |
| - shape(2, N): Separate - and + values for each bar. First row |
| contains the lower errors, the second row contains the upper |
| errors. |
| - *None*: No errorbar. (default) |
| |
| See :doc:`/gallery/statistics/errorbar_features` for an example on |
| the usage of *xerr* and *yerr*. |
| |
| ecolor : color or list of color, default: 'black' |
| The line color of the errorbars. |
| |
| capsize : float, default: :rc:`errorbar.capsize` |
| The length of the error bar caps in points. |
| |
| error_kw : dict, optional |
| Dictionary of keyword arguments to be passed to the |
| `~.Axes.errorbar` method. Values of *ecolor* or *capsize* defined |
| here take precedence over the independent keyword arguments. |
| |
| log : bool, default: False |
| If ``True``, set the x-axis to be log scale. |
| |
| data : indexable object, optional |
| If given, all parameters also accept a string ``s``, which is |
| interpreted as ``data[s]`` (unless this raises an exception). |
| |
| **kwargs : `.Rectangle` properties |
| |
| %(Rectangle:kwdoc)s |
| |
| See Also |
| -------- |
| bar : Plot a vertical bar plot. |
| |
| Notes |
| ----- |
| Stacked bars can be achieved by passing individual *left* values per |
| bar. See |
| :doc:`/gallery/lines_bars_and_markers/horizontal_barchart_distribution`. |
| """ |
| kwargs.setdefault('orientation', 'horizontal') |
| patches = self.bar(x=left, height=height, width=width, bottom=y, |
| align=align, data=data, **kwargs) |
| return patches |
|
|
| def bar_label(self, container, labels=None, *, fmt="%g", label_type="edge", |
| padding=0, **kwargs): |
| """ |
| Label a bar plot. |
| |
| Adds labels to bars in the given `.BarContainer`. |
| You may need to adjust the axis limits to fit the labels. |
| |
| Parameters |
| ---------- |
| container : `.BarContainer` |
| Container with all the bars and optionally errorbars, likely |
| returned from `.bar` or `.barh`. |
| |
| labels : array-like, optional |
| A list of label texts, that should be displayed. If not given, the |
| label texts will be the data values formatted with *fmt*. |
| |
| fmt : str or callable, default: '%g' |
| An unnamed %-style or {}-style format string for the label or a |
| function to call with the value as the first argument. |
| When *fmt* is a string and can be interpreted in both formats, |
| %-style takes precedence over {}-style. |
| |
| .. versionadded:: 3.7 |
| Support for {}-style format string and callables. |
| |
| label_type : {'edge', 'center'}, default: 'edge' |
| The label type. Possible values: |
| |
| - 'edge': label placed at the end-point of the bar segment, and the |
| value displayed will be the position of that end-point. |
| - 'center': label placed in the center of the bar segment, and the |
| value displayed will be the length of that segment. |
| (useful for stacked bars, i.e., |
| :doc:`/gallery/lines_bars_and_markers/bar_label_demo`) |
| |
| padding : float, default: 0 |
| Distance of label from the end of the bar, in points. |
| |
| **kwargs |
| Any remaining keyword arguments are passed through to |
| `.Axes.annotate`. The alignment parameters ( |
| *horizontalalignment* / *ha*, *verticalalignment* / *va*) are |
| not supported because the labels are automatically aligned to |
| the bars. |
| |
| Returns |
| ------- |
| list of `.Annotation` |
| A list of `.Annotation` instances for the labels. |
| """ |
| for key in ['horizontalalignment', 'ha', 'verticalalignment', 'va']: |
| if key in kwargs: |
| raise ValueError( |
| f"Passing {key!r} to bar_label() is not supported.") |
|
|
| a, b = self.yaxis.get_view_interval() |
| y_inverted = a > b |
| c, d = self.xaxis.get_view_interval() |
| x_inverted = c > d |
|
|
| |
| |
| def sign(x): |
| return 1 if x >= 0 else -1 |
|
|
| _api.check_in_list(['edge', 'center'], label_type=label_type) |
|
|
| bars = container.patches |
| errorbar = container.errorbar |
| datavalues = container.datavalues |
| orientation = container.orientation |
|
|
| if errorbar: |
| |
| lines = errorbar.lines |
| barlinecols = lines[2] |
| barlinecol = barlinecols[0] |
| errs = barlinecol.get_segments() |
| else: |
| errs = [] |
|
|
| if labels is None: |
| labels = [] |
|
|
| annotations = [] |
|
|
| for bar, err, dat, lbl in itertools.zip_longest( |
| bars, errs, datavalues, labels |
| ): |
| (x0, y0), (x1, y1) = bar.get_bbox().get_points() |
| xc, yc = (x0 + x1) / 2, (y0 + y1) / 2 |
|
|
| if orientation == "vertical": |
| extrema = max(y0, y1) if dat >= 0 else min(y0, y1) |
| length = abs(y0 - y1) |
| else: |
| extrema = max(x0, x1) if dat >= 0 else min(x0, x1) |
| length = abs(x0 - x1) |
|
|
| if err is None or np.size(err) == 0: |
| endpt = extrema |
| elif orientation == "vertical": |
| endpt = err[:, 1].max() if dat >= 0 else err[:, 1].min() |
| else: |
| endpt = err[:, 0].max() if dat >= 0 else err[:, 0].min() |
|
|
| if label_type == "center": |
| value = sign(dat) * length |
| else: |
| value = extrema |
|
|
| if label_type == "center": |
| xy = (0.5, 0.5) |
| kwargs["xycoords"] = ( |
| lambda r, b=bar: |
| mtransforms.Bbox.intersection( |
| b.get_window_extent(r), b.get_clip_box() |
| ) or mtransforms.Bbox.null() |
| ) |
| else: |
| if orientation == "vertical": |
| xy = xc, endpt |
| else: |
| xy = endpt, yc |
|
|
| if orientation == "vertical": |
| y_direction = -1 if y_inverted else 1 |
| xytext = 0, y_direction * sign(dat) * padding |
| else: |
| x_direction = -1 if x_inverted else 1 |
| xytext = x_direction * sign(dat) * padding, 0 |
|
|
| if label_type == "center": |
| ha, va = "center", "center" |
| else: |
| if orientation == "vertical": |
| ha = 'center' |
| if y_inverted: |
| va = 'top' if dat > 0 else 'bottom' |
| else: |
| va = 'top' if dat < 0 else 'bottom' |
| else: |
| if x_inverted: |
| ha = 'right' if dat > 0 else 'left' |
| else: |
| ha = 'right' if dat < 0 else 'left' |
| va = 'center' |
|
|
| if np.isnan(dat): |
| lbl = '' |
|
|
| if lbl is None: |
| if isinstance(fmt, str): |
| lbl = cbook._auto_format_str(fmt, value) |
| elif callable(fmt): |
| lbl = fmt(value) |
| else: |
| raise TypeError("fmt must be a str or callable") |
| annotation = self.annotate(lbl, |
| xy, xytext, textcoords="offset points", |
| ha=ha, va=va, **kwargs) |
| annotations.append(annotation) |
|
|
| return annotations |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def broken_barh(self, xranges, yrange, **kwargs): |
| """ |
| Plot a horizontal sequence of rectangles. |
| |
| A rectangle is drawn for each element of *xranges*. All rectangles |
| have the same vertical position and size defined by *yrange*. |
| |
| Parameters |
| ---------- |
| xranges : sequence of tuples (*xmin*, *xwidth*) |
| The x-positions and extents of the rectangles. For each tuple |
| (*xmin*, *xwidth*) a rectangle is drawn from *xmin* to *xmin* + |
| *xwidth*. |
| yrange : (*ymin*, *yheight*) |
| The y-position and extent for all the rectangles. |
| |
| Returns |
| ------- |
| `~.collections.PolyCollection` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| **kwargs : `.PolyCollection` properties |
| |
| Each *kwarg* can be either a single argument applying to all |
| rectangles, e.g.:: |
| |
| facecolors='black' |
| |
| or a sequence of arguments over which is cycled, e.g.:: |
| |
| facecolors=('black', 'blue') |
| |
| would create interleaving black and blue rectangles. |
| |
| Supported keywords: |
| |
| %(PolyCollection:kwdoc)s |
| """ |
| |
| xdata = cbook._safe_first_finite(xranges) if len(xranges) else None |
| ydata = cbook._safe_first_finite(yrange) if len(yrange) else None |
| self._process_unit_info( |
| [("x", xdata), ("y", ydata)], kwargs, convert=False) |
|
|
| vertices = [] |
| y0, dy = yrange |
| y0, y1 = self.convert_yunits((y0, y0 + dy)) |
| for xr in xranges: |
| try: |
| x0, dx = xr |
| except Exception: |
| raise ValueError( |
| "each range in xrange must be a sequence with two " |
| "elements (i.e. xrange must be an (N, 2) array)") from None |
| x0, x1 = self.convert_xunits((x0, x0 + dx)) |
| vertices.append([(x0, y0), (x0, y1), (x1, y1), (x1, y0)]) |
|
|
| col = mcoll.PolyCollection(np.array(vertices), **kwargs) |
| self.add_collection(col, autolim=True) |
| self._request_autoscale_view() |
|
|
| return col |
|
|
| @_preprocess_data() |
| def stem(self, *args, linefmt=None, markerfmt=None, basefmt=None, bottom=0, |
| label=None, orientation='vertical'): |
| """ |
| Create a stem plot. |
| |
| A stem plot draws lines perpendicular to a baseline at each location |
| *locs* from the baseline to *heads*, and places a marker there. For |
| vertical stem plots (the default), the *locs* are *x* positions, and |
| the *heads* are *y* values. For horizontal stem plots, the *locs* are |
| *y* positions, and the *heads* are *x* values. |
| |
| Call signature:: |
| |
| stem([locs,] heads, linefmt=None, markerfmt=None, basefmt=None) |
| |
| The *locs*-positions are optional. *linefmt* may be provided as |
| positional, but all other formats must be provided as keyword |
| arguments. |
| |
| Parameters |
| ---------- |
| locs : array-like, default: (0, 1, ..., len(heads) - 1) |
| For vertical stem plots, the x-positions of the stems. |
| For horizontal stem plots, the y-positions of the stems. |
| |
| heads : array-like |
| For vertical stem plots, the y-values of the stem heads. |
| For horizontal stem plots, the x-values of the stem heads. |
| |
| linefmt : str, optional |
| A string defining the color and/or linestyle of the vertical lines: |
| |
| ========= ============= |
| Character Line Style |
| ========= ============= |
| ``'-'`` solid line |
| ``'--'`` dashed line |
| ``'-.'`` dash-dot line |
| ``':'`` dotted line |
| ========= ============= |
| |
| Default: 'C0-', i.e. solid line with the first color of the color |
| cycle. |
| |
| Note: Markers specified through this parameter (e.g. 'x') will be |
| silently ignored. Instead, markers should be specified using |
| *markerfmt*. |
| |
| markerfmt : str, optional |
| A string defining the color and/or shape of the markers at the stem |
| heads. If the marker is not given, use the marker 'o', i.e. filled |
| circles. If the color is not given, use the color from *linefmt*. |
| |
| basefmt : str, default: 'C3-' ('C2-' in classic mode) |
| A format string defining the properties of the baseline. |
| |
| orientation : {'vertical', 'horizontal'}, default: 'vertical' |
| If 'vertical', will produce a plot with stems oriented vertically, |
| If 'horizontal', the stems will be oriented horizontally. |
| |
| bottom : float, default: 0 |
| The y/x-position of the baseline (depending on orientation). |
| |
| label : str, default: None |
| The label to use for the stems in legends. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| Returns |
| ------- |
| `.StemContainer` |
| The container may be treated like a tuple |
| (*markerline*, *stemlines*, *baseline*) |
| |
| Notes |
| ----- |
| .. seealso:: |
| The MATLAB function |
| `stem <https://www.mathworks.com/help/matlab/ref/stem.html>`_ |
| which inspired this method. |
| """ |
| if not 1 <= len(args) <= 3: |
| raise _api.nargs_error('stem', '1-3', len(args)) |
| _api.check_in_list(['horizontal', 'vertical'], orientation=orientation) |
|
|
| if len(args) == 1: |
| heads, = args |
| locs = np.arange(len(heads)) |
| args = () |
| elif isinstance(args[1], str): |
| heads, *args = args |
| locs = np.arange(len(heads)) |
| else: |
| locs, heads, *args = args |
|
|
| if orientation == 'vertical': |
| locs, heads = self._process_unit_info([("x", locs), ("y", heads)]) |
| else: |
| heads, locs = self._process_unit_info([("x", heads), ("y", locs)]) |
|
|
| |
| if linefmt is None: |
| linefmt = args[0] if len(args) > 0 else "C0-" |
| linestyle, linemarker, linecolor = _process_plot_format(linefmt) |
|
|
| |
| if markerfmt is None: |
| |
| markerfmt = "o" |
| if markerfmt == '': |
| markerfmt = ' ' |
| markerstyle, markermarker, markercolor = \ |
| _process_plot_format(markerfmt) |
| if markermarker is None: |
| markermarker = 'o' |
| if markerstyle is None: |
| markerstyle = 'None' |
| if markercolor is None: |
| markercolor = linecolor |
|
|
| |
| if basefmt is None: |
| basefmt = ("C2-" if mpl.rcParams["_internal.classic_mode"] else |
| "C3-") |
| basestyle, basemarker, basecolor = _process_plot_format(basefmt) |
|
|
| |
| if linestyle is None: |
| linestyle = mpl.rcParams['lines.linestyle'] |
| xlines = self.vlines if orientation == "vertical" else self.hlines |
| stemlines = xlines( |
| locs, bottom, heads, |
| colors=linecolor, linestyles=linestyle, label="_nolegend_") |
|
|
| if orientation == 'horizontal': |
| marker_x = heads |
| marker_y = locs |
| baseline_x = [bottom, bottom] |
| baseline_y = [np.min(locs), np.max(locs)] |
| else: |
| marker_x = locs |
| marker_y = heads |
| baseline_x = [np.min(locs), np.max(locs)] |
| baseline_y = [bottom, bottom] |
|
|
| markerline, = self.plot(marker_x, marker_y, |
| color=markercolor, linestyle=markerstyle, |
| marker=markermarker, label="_nolegend_") |
|
|
| baseline, = self.plot(baseline_x, baseline_y, |
| color=basecolor, linestyle=basestyle, |
| marker=basemarker, label="_nolegend_") |
|
|
| stem_container = StemContainer((markerline, stemlines, baseline), |
| label=label) |
| self.add_container(stem_container) |
| return stem_container |
|
|
| @_preprocess_data(replace_names=["x", "explode", "labels", "colors"]) |
| def pie(self, x, explode=None, labels=None, colors=None, |
| autopct=None, pctdistance=0.6, shadow=False, labeldistance=1.1, |
| startangle=0, radius=1, counterclock=True, |
| wedgeprops=None, textprops=None, center=(0, 0), |
| frame=False, rotatelabels=False, *, normalize=True, hatch=None): |
| """ |
| Plot a pie chart. |
| |
| Make a pie chart of array *x*. The fractional area of each wedge is |
| given by ``x/sum(x)``. |
| |
| The wedges are plotted counterclockwise, by default starting from the |
| x-axis. |
| |
| Parameters |
| ---------- |
| x : 1D array-like |
| The wedge sizes. |
| |
| explode : array-like, default: None |
| If not *None*, is a ``len(x)`` array which specifies the fraction |
| of the radius with which to offset each wedge. |
| |
| labels : list, default: None |
| A sequence of strings providing the labels for each wedge |
| |
| colors : color or array-like of color, default: None |
| A sequence of colors through which the pie chart will cycle. If |
| *None*, will use the colors in the currently active cycle. |
| |
| hatch : str or list, default: None |
| Hatching pattern applied to all pie wedges or sequence of patterns |
| through which the chart will cycle. For a list of valid patterns, |
| see :doc:`/gallery/shapes_and_collections/hatch_style_reference`. |
| |
| .. versionadded:: 3.7 |
| |
| autopct : None or str or callable, default: None |
| If not *None*, *autopct* is a string or function used to label the |
| wedges with their numeric value. The label will be placed inside |
| the wedge. If *autopct* is a format string, the label will be |
| ``fmt % pct``. If *autopct* is a function, then it will be called. |
| |
| pctdistance : float, default: 0.6 |
| The relative distance along the radius at which the text |
| generated by *autopct* is drawn. To draw the text outside the pie, |
| set *pctdistance* > 1. This parameter is ignored if *autopct* is |
| ``None``. |
| |
| labeldistance : float or None, default: 1.1 |
| The relative distance along the radius at which the labels are |
| drawn. To draw the labels inside the pie, set *labeldistance* < 1. |
| If set to ``None``, labels are not drawn but are still stored for |
| use in `.legend`. |
| |
| shadow : bool or dict, default: False |
| If bool, whether to draw a shadow beneath the pie. If dict, draw a shadow |
| passing the properties in the dict to `.Shadow`. |
| |
| .. versionadded:: 3.8 |
| *shadow* can be a dict. |
| |
| startangle : float, default: 0 degrees |
| The angle by which the start of the pie is rotated, |
| counterclockwise from the x-axis. |
| |
| radius : float, default: 1 |
| The radius of the pie. |
| |
| counterclock : bool, default: True |
| Specify fractions direction, clockwise or counterclockwise. |
| |
| wedgeprops : dict, default: None |
| Dict of arguments passed to each `.patches.Wedge` of the pie. |
| For example, ``wedgeprops = {'linewidth': 3}`` sets the width of |
| the wedge border lines equal to 3. By default, ``clip_on=False``. |
| When there is a conflict between these properties and other |
| keywords, properties passed to *wedgeprops* take precedence. |
| |
| textprops : dict, default: None |
| Dict of arguments to pass to the text objects. |
| |
| center : (float, float), default: (0, 0) |
| The coordinates of the center of the chart. |
| |
| frame : bool, default: False |
| Plot Axes frame with the chart if true. |
| |
| rotatelabels : bool, default: False |
| Rotate each label to the angle of the corresponding slice if true. |
| |
| normalize : bool, default: True |
| When *True*, always make a full pie by normalizing x so that |
| ``sum(x) == 1``. *False* makes a partial pie if ``sum(x) <= 1`` |
| and raises a `ValueError` for ``sum(x) > 1``. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| Returns |
| ------- |
| patches : list |
| A sequence of `matplotlib.patches.Wedge` instances |
| |
| texts : list |
| A list of the label `.Text` instances. |
| |
| autotexts : list |
| A list of `.Text` instances for the numeric labels. This will only |
| be returned if the parameter *autopct* is not *None*. |
| |
| Notes |
| ----- |
| The pie chart will probably look best if the figure and Axes are |
| square, or the Axes aspect is equal. |
| This method sets the aspect ratio of the axis to "equal". |
| The Axes aspect ratio can be controlled with `.Axes.set_aspect`. |
| """ |
| self.set_aspect('equal') |
| |
| |
| x = np.asarray(x, np.float32) |
| if x.ndim > 1: |
| raise ValueError("x must be 1D") |
|
|
| if np.any(x < 0): |
| raise ValueError("Wedge sizes 'x' must be non negative values") |
|
|
| sx = x.sum() |
|
|
| if normalize: |
| x = x / sx |
| elif sx > 1: |
| raise ValueError('Cannot plot an unnormalized pie with sum(x) > 1') |
| if labels is None: |
| labels = [''] * len(x) |
| if explode is None: |
| explode = [0] * len(x) |
| if len(x) != len(labels): |
| raise ValueError("'label' must be of length 'x'") |
| if len(x) != len(explode): |
| raise ValueError("'explode' must be of length 'x'") |
| if colors is None: |
| get_next_color = self._get_patches_for_fill.get_next_color |
| else: |
| color_cycle = itertools.cycle(colors) |
|
|
| def get_next_color(): |
| return next(color_cycle) |
|
|
| hatch_cycle = itertools.cycle(np.atleast_1d(hatch)) |
|
|
| _api.check_isinstance(Real, radius=radius, startangle=startangle) |
| if radius <= 0: |
| raise ValueError(f'radius must be a positive number, not {radius}') |
|
|
| |
| theta1 = startangle / 360 |
|
|
| if wedgeprops is None: |
| wedgeprops = {} |
| if textprops is None: |
| textprops = {} |
|
|
| texts = [] |
| slices = [] |
| autotexts = [] |
|
|
| for frac, label, expl in zip(x, labels, explode): |
| x, y = center |
| theta2 = (theta1 + frac) if counterclock else (theta1 - frac) |
| thetam = 2 * np.pi * 0.5 * (theta1 + theta2) |
| x += expl * math.cos(thetam) |
| y += expl * math.sin(thetam) |
|
|
| w = mpatches.Wedge((x, y), radius, 360. * min(theta1, theta2), |
| 360. * max(theta1, theta2), |
| facecolor=get_next_color(), |
| hatch=next(hatch_cycle), |
| clip_on=False, |
| label=label) |
| w.set(**wedgeprops) |
| slices.append(w) |
| self.add_patch(w) |
|
|
| if shadow: |
| |
| |
| shadow_dict = {'ox': -0.02, 'oy': -0.02, 'label': '_nolegend_'} |
| if isinstance(shadow, dict): |
| shadow_dict.update(shadow) |
| self.add_patch(mpatches.Shadow(w, **shadow_dict)) |
|
|
| if labeldistance is not None: |
| xt = x + labeldistance * radius * math.cos(thetam) |
| yt = y + labeldistance * radius * math.sin(thetam) |
| label_alignment_h = 'left' if xt > 0 else 'right' |
| label_alignment_v = 'center' |
| label_rotation = 'horizontal' |
| if rotatelabels: |
| label_alignment_v = 'bottom' if yt > 0 else 'top' |
| label_rotation = (np.rad2deg(thetam) |
| + (0 if xt > 0 else 180)) |
| t = self.text(xt, yt, label, |
| clip_on=False, |
| horizontalalignment=label_alignment_h, |
| verticalalignment=label_alignment_v, |
| rotation=label_rotation, |
| size=mpl.rcParams['xtick.labelsize']) |
| t.set(**textprops) |
| texts.append(t) |
|
|
| if autopct is not None: |
| xt = x + pctdistance * radius * math.cos(thetam) |
| yt = y + pctdistance * radius * math.sin(thetam) |
| if isinstance(autopct, str): |
| s = autopct % (100. * frac) |
| elif callable(autopct): |
| s = autopct(100. * frac) |
| else: |
| raise TypeError( |
| 'autopct must be callable or a format string') |
| t = self.text(xt, yt, s, |
| clip_on=False, |
| horizontalalignment='center', |
| verticalalignment='center') |
| t.set(**textprops) |
| autotexts.append(t) |
|
|
| theta1 = theta2 |
|
|
| if frame: |
| self._request_autoscale_view() |
| else: |
| self.set(frame_on=False, xticks=[], yticks=[], |
| xlim=(-1.25 + center[0], 1.25 + center[0]), |
| ylim=(-1.25 + center[1], 1.25 + center[1])) |
|
|
| if autopct is None: |
| return slices, texts |
| else: |
| return slices, texts, autotexts |
|
|
| @staticmethod |
| def _errorevery_to_mask(x, errorevery): |
| """ |
| Normalize `errorbar`'s *errorevery* to be a boolean mask for data *x*. |
| |
| This function is split out to be usable both by 2D and 3D errorbars. |
| """ |
| if isinstance(errorevery, Integral): |
| errorevery = (0, errorevery) |
| if isinstance(errorevery, tuple): |
| if (len(errorevery) == 2 and |
| isinstance(errorevery[0], Integral) and |
| isinstance(errorevery[1], Integral)): |
| errorevery = slice(errorevery[0], None, errorevery[1]) |
| else: |
| raise ValueError( |
| f'{errorevery=!r} is a not a tuple of two integers') |
| elif isinstance(errorevery, slice): |
| pass |
| elif not isinstance(errorevery, str) and np.iterable(errorevery): |
| try: |
| x[errorevery] |
| except (ValueError, IndexError) as err: |
| raise ValueError( |
| f"{errorevery=!r} is iterable but not a valid NumPy fancy " |
| "index to match 'xerr'/'yerr'") from err |
| else: |
| raise ValueError(f"{errorevery=!r} is not a recognized value") |
| everymask = np.zeros(len(x), bool) |
| everymask[errorevery] = True |
| return everymask |
|
|
| @_preprocess_data(replace_names=["x", "y", "xerr", "yerr"], |
| label_namer="y") |
| @_docstring.dedent_interpd |
| def errorbar(self, x, y, yerr=None, xerr=None, |
| fmt='', ecolor=None, elinewidth=None, capsize=None, |
| barsabove=False, lolims=False, uplims=False, |
| xlolims=False, xuplims=False, errorevery=1, capthick=None, |
| **kwargs): |
| """ |
| Plot y versus x as lines and/or markers with attached errorbars. |
| |
| *x*, *y* define the data locations, *xerr*, *yerr* define the errorbar |
| sizes. By default, this draws the data markers/lines as well the |
| errorbars. Use fmt='none' to draw errorbars without any data markers. |
| |
| .. versionadded:: 3.7 |
| Caps and error lines are drawn in polar coordinates on polar plots. |
| |
| |
| Parameters |
| ---------- |
| x, y : float or array-like |
| The data positions. |
| |
| xerr, yerr : float or array-like, shape(N,) or shape(2, N), optional |
| The errorbar sizes: |
| |
| - scalar: Symmetric +/- values for all data points. |
| - shape(N,): Symmetric +/-values for each data point. |
| - shape(2, N): Separate - and + values for each bar. First row |
| contains the lower errors, the second row contains the upper |
| errors. |
| - *None*: No errorbar. |
| |
| All values must be >= 0. |
| |
| See :doc:`/gallery/statistics/errorbar_features` |
| for an example on the usage of ``xerr`` and ``yerr``. |
| |
| fmt : str, default: '' |
| The format for the data points / data lines. See `.plot` for |
| details. |
| |
| Use 'none' (case-insensitive) to plot errorbars without any data |
| markers. |
| |
| ecolor : color, default: None |
| The color of the errorbar lines. If None, use the color of the |
| line connecting the markers. |
| |
| elinewidth : float, default: None |
| The linewidth of the errorbar lines. If None, the linewidth of |
| the current style is used. |
| |
| capsize : float, default: :rc:`errorbar.capsize` |
| The length of the error bar caps in points. |
| |
| capthick : float, default: None |
| An alias to the keyword argument *markeredgewidth* (a.k.a. *mew*). |
| This setting is a more sensible name for the property that |
| controls the thickness of the error bar cap in points. For |
| backwards compatibility, if *mew* or *markeredgewidth* are given, |
| then they will over-ride *capthick*. This may change in future |
| releases. |
| |
| barsabove : bool, default: False |
| If True, will plot the errorbars above the plot |
| symbols. Default is below. |
| |
| lolims, uplims, xlolims, xuplims : bool, default: False |
| These arguments can be used to indicate that a value gives only |
| upper/lower limits. In that case a caret symbol is used to |
| indicate this. *lims*-arguments may be scalars, or array-likes of |
| the same length as *xerr* and *yerr*. To use limits with inverted |
| axes, `~.Axes.set_xlim` or `~.Axes.set_ylim` must be called before |
| :meth:`errorbar`. Note the tricky parameter names: setting e.g. |
| *lolims* to True means that the y-value is a *lower* limit of the |
| True value, so, only an *upward*-pointing arrow will be drawn! |
| |
| errorevery : int or (int, int), default: 1 |
| draws error bars on a subset of the data. *errorevery* =N draws |
| error bars on the points (x[::N], y[::N]). |
| *errorevery* =(start, N) draws error bars on the points |
| (x[start::N], y[start::N]). e.g. errorevery=(6, 3) |
| adds error bars to the data at (x[6], x[9], x[12], x[15], ...). |
| Used to avoid overlapping error bars when two series share x-axis |
| values. |
| |
| Returns |
| ------- |
| `.ErrorbarContainer` |
| The container contains: |
| |
| - plotline: `~matplotlib.lines.Line2D` instance of x, y plot markers |
| and/or line. |
| - caplines: A tuple of `~matplotlib.lines.Line2D` instances of the error |
| bar caps. |
| - barlinecols: A tuple of `.LineCollection` with the horizontal and |
| vertical error ranges. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| All other keyword arguments are passed on to the `~.Axes.plot` call |
| drawing the markers. For example, this code makes big red squares |
| with thick green edges:: |
| |
| x, y, yerr = rand(3, 10) |
| errorbar(x, y, yerr, marker='s', mfc='red', |
| mec='green', ms=20, mew=4) |
| |
| where *mfc*, *mec*, *ms* and *mew* are aliases for the longer |
| property names, *markerfacecolor*, *markeredgecolor*, *markersize* |
| and *markeredgewidth*. |
| |
| Valid kwargs for the marker properties are: |
| |
| - *dashes* |
| - *dash_capstyle* |
| - *dash_joinstyle* |
| - *drawstyle* |
| - *fillstyle* |
| - *linestyle* |
| - *marker* |
| - *markeredgecolor* |
| - *markeredgewidth* |
| - *markerfacecolor* |
| - *markerfacecoloralt* |
| - *markersize* |
| - *markevery* |
| - *solid_capstyle* |
| - *solid_joinstyle* |
| |
| Refer to the corresponding `.Line2D` property for more details: |
| |
| %(Line2D:kwdoc)s |
| """ |
| kwargs = cbook.normalize_kwargs(kwargs, mlines.Line2D) |
| |
| kwargs = {k: v for k, v in kwargs.items() if v is not None} |
| kwargs.setdefault('zorder', 2) |
|
|
| |
| if not isinstance(x, np.ndarray): |
| x = np.asarray(x, dtype=object) |
| if not isinstance(y, np.ndarray): |
| y = np.asarray(y, dtype=object) |
|
|
| def _upcast_err(err): |
| """ |
| Safely handle tuple of containers that carry units. |
| |
| This function covers the case where the input to the xerr/yerr is a |
| length 2 tuple of equal length ndarray-subclasses that carry the |
| unit information in the container. |
| |
| If we have a tuple of nested numpy array (subclasses), we defer |
| coercing the units to be consistent to the underlying unit |
| library (and implicitly the broadcasting). |
| |
| Otherwise, fallback to casting to an object array. |
| """ |
|
|
| if ( |
| |
| np.iterable(err) and |
| |
| len(err) > 0 and |
| |
| |
| |
| |
| isinstance(cbook._safe_first_finite(err), np.ndarray) |
| ): |
| |
| atype = type(cbook._safe_first_finite(err)) |
| |
| if atype is np.ndarray: |
| |
| |
| return np.asarray(err, dtype=object) |
| |
| |
| return atype(err) |
| |
| return np.asarray(err, dtype=object) |
|
|
| if xerr is not None and not isinstance(xerr, np.ndarray): |
| xerr = _upcast_err(xerr) |
| if yerr is not None and not isinstance(yerr, np.ndarray): |
| yerr = _upcast_err(yerr) |
| x, y = np.atleast_1d(x, y) |
| if len(x) != len(y): |
| raise ValueError("'x' and 'y' must have the same size") |
|
|
| everymask = self._errorevery_to_mask(x, errorevery) |
|
|
| label = kwargs.pop("label", None) |
| kwargs['label'] = '_nolegend_' |
|
|
| |
| |
| |
| |
| (data_line, base_style), = self._get_lines._plot_args( |
| self, (x, y) if fmt == '' else (x, y, fmt), kwargs, return_kwargs=True) |
|
|
| |
| if barsabove: |
| data_line.set_zorder(kwargs['zorder'] - .1) |
| else: |
| data_line.set_zorder(kwargs['zorder'] + .1) |
|
|
| |
| if fmt.lower() != 'none': |
| self.add_line(data_line) |
| else: |
| data_line = None |
| |
| |
| |
| base_style.pop('color') |
| if 'color' in kwargs: |
| base_style['color'] = kwargs.pop('color') |
|
|
| if 'color' not in base_style: |
| base_style['color'] = 'C0' |
| if ecolor is None: |
| ecolor = base_style['color'] |
|
|
| |
| |
| for key in ['marker', 'markersize', 'markerfacecolor', |
| 'markerfacecoloralt', |
| 'markeredgewidth', 'markeredgecolor', 'markevery', |
| 'linestyle', 'fillstyle', 'drawstyle', 'dash_capstyle', |
| 'dash_joinstyle', 'solid_capstyle', 'solid_joinstyle', |
| 'dashes']: |
| base_style.pop(key, None) |
|
|
| |
| eb_lines_style = {**base_style, 'color': ecolor} |
|
|
| if elinewidth is not None: |
| eb_lines_style['linewidth'] = elinewidth |
| elif 'linewidth' in kwargs: |
| eb_lines_style['linewidth'] = kwargs['linewidth'] |
|
|
| for key in ('transform', 'alpha', 'zorder', 'rasterized'): |
| if key in kwargs: |
| eb_lines_style[key] = kwargs[key] |
|
|
| |
| eb_cap_style = {**base_style, 'linestyle': 'none'} |
| if capsize is None: |
| capsize = mpl.rcParams["errorbar.capsize"] |
| if capsize > 0: |
| eb_cap_style['markersize'] = 2. * capsize |
| if capthick is not None: |
| eb_cap_style['markeredgewidth'] = capthick |
|
|
| |
| |
| for key in ('markeredgewidth', 'transform', 'alpha', |
| 'zorder', 'rasterized'): |
| if key in kwargs: |
| eb_cap_style[key] = kwargs[key] |
| eb_cap_style['color'] = ecolor |
|
|
| barcols = [] |
| caplines = {'x': [], 'y': []} |
|
|
| |
| def apply_mask(arrays, mask): |
| return [array[mask] for array in arrays] |
|
|
| |
| for (dep_axis, dep, err, lolims, uplims, indep, lines_func, |
| marker, lomarker, himarker) in [ |
| ("x", x, xerr, xlolims, xuplims, y, self.hlines, |
| "|", mlines.CARETRIGHTBASE, mlines.CARETLEFTBASE), |
| ("y", y, yerr, lolims, uplims, x, self.vlines, |
| "_", mlines.CARETUPBASE, mlines.CARETDOWNBASE), |
| ]: |
| if err is None: |
| continue |
| lolims = np.broadcast_to(lolims, len(dep)).astype(bool) |
| uplims = np.broadcast_to(uplims, len(dep)).astype(bool) |
| try: |
| np.broadcast_to(err, (2, len(dep))) |
| except ValueError: |
| raise ValueError( |
| f"'{dep_axis}err' (shape: {np.shape(err)}) must be a " |
| f"scalar or a 1D or (2, n) array-like whose shape matches " |
| f"'{dep_axis}' (shape: {np.shape(dep)})") from None |
| res = np.zeros(err.shape, dtype=bool) |
| if np.any(np.less(err, -err, out=res, where=(err == err))): |
| |
| raise ValueError( |
| f"'{dep_axis}err' must not contain negative values") |
| |
| |
| |
| |
| low, high = dep + np.row_stack([-(1 - lolims), 1 - uplims]) * err |
| barcols.append(lines_func( |
| *apply_mask([indep, low, high], everymask), **eb_lines_style)) |
| if self.name == "polar" and dep_axis == "x": |
| for b in barcols: |
| for p in b.get_paths(): |
| p._interpolation_steps = 2 |
| |
| nolims = ~(lolims | uplims) |
| if nolims.any() and capsize > 0: |
| indep_masked, lo_masked, hi_masked = apply_mask( |
| [indep, low, high], nolims & everymask) |
| for lh_masked in [lo_masked, hi_masked]: |
| |
| |
| |
| line = mlines.Line2D(indep_masked, indep_masked, |
| marker=marker, **eb_cap_style) |
| line.set(**{f"{dep_axis}data": lh_masked}) |
| caplines[dep_axis].append(line) |
| for idx, (lims, hl) in enumerate([(lolims, high), (uplims, low)]): |
| if not lims.any(): |
| continue |
| hlmarker = ( |
| himarker |
| if self._axis_map[dep_axis].get_inverted() ^ idx |
| else lomarker) |
| x_masked, y_masked, hl_masked = apply_mask( |
| [x, y, hl], lims & everymask) |
| |
| line = mlines.Line2D(x_masked, y_masked, |
| marker=hlmarker, **eb_cap_style) |
| line.set(**{f"{dep_axis}data": hl_masked}) |
| caplines[dep_axis].append(line) |
| if capsize > 0: |
| caplines[dep_axis].append(mlines.Line2D( |
| x_masked, y_masked, marker=marker, **eb_cap_style)) |
| if self.name == 'polar': |
| for axis in caplines: |
| for l in caplines[axis]: |
| |
| for theta, r in zip(l.get_xdata(), l.get_ydata()): |
| rotation = mtransforms.Affine2D().rotate(theta) |
| if axis == 'y': |
| rotation.rotate(-np.pi / 2) |
| ms = mmarkers.MarkerStyle(marker=marker, |
| transform=rotation) |
| self.add_line(mlines.Line2D([theta], [r], marker=ms, |
| **eb_cap_style)) |
| else: |
| for axis in caplines: |
| for l in caplines[axis]: |
| self.add_line(l) |
|
|
| self._request_autoscale_view() |
| caplines = caplines['x'] + caplines['y'] |
| errorbar_container = ErrorbarContainer( |
| (data_line, tuple(caplines), tuple(barcols)), |
| has_xerr=(xerr is not None), has_yerr=(yerr is not None), |
| label=label) |
| self.containers.append(errorbar_container) |
|
|
| return errorbar_container |
|
|
| @_preprocess_data() |
| def boxplot(self, x, notch=None, sym=None, vert=None, whis=None, |
| positions=None, widths=None, patch_artist=None, |
| bootstrap=None, usermedians=None, conf_intervals=None, |
| meanline=None, showmeans=None, showcaps=None, |
| showbox=None, showfliers=None, boxprops=None, |
| labels=None, flierprops=None, medianprops=None, |
| meanprops=None, capprops=None, whiskerprops=None, |
| manage_ticks=True, autorange=False, zorder=None, |
| capwidths=None): |
| """ |
| Draw a box and whisker plot. |
| |
| The box extends from the first quartile (Q1) to the third |
| quartile (Q3) of the data, with a line at the median. |
| The whiskers extend from the box to the farthest data point |
| lying within 1.5x the inter-quartile range (IQR) from the box. |
| Flier points are those past the end of the whiskers. |
| See https://en.wikipedia.org/wiki/Box_plot for reference. |
| |
| .. code-block:: none |
| |
| Q1-1.5IQR Q1 median Q3 Q3+1.5IQR |
| |-----:-----| |
| o |--------| : |--------| o o |
| |-----:-----| |
| flier <-----------> fliers |
| IQR |
| |
| |
| Parameters |
| ---------- |
| x : Array or a sequence of vectors. |
| The input data. If a 2D array, a boxplot is drawn for each column |
| in *x*. If a sequence of 1D arrays, a boxplot is drawn for each |
| array in *x*. |
| |
| notch : bool, default: False |
| Whether to draw a notched boxplot (`True`), or a rectangular |
| boxplot (`False`). The notches represent the confidence interval |
| (CI) around the median. The documentation for *bootstrap* |
| describes how the locations of the notches are computed by |
| default, but their locations may also be overridden by setting the |
| *conf_intervals* parameter. |
| |
| .. note:: |
| |
| In cases where the values of the CI are less than the |
| lower quartile or greater than the upper quartile, the |
| notches will extend beyond the box, giving it a |
| distinctive "flipped" appearance. This is expected |
| behavior and consistent with other statistical |
| visualization packages. |
| |
| sym : str, optional |
| The default symbol for flier points. An empty string ('') hides |
| the fliers. If `None`, then the fliers default to 'b+'. More |
| control is provided by the *flierprops* parameter. |
| |
| vert : bool, default: True |
| If `True`, draws vertical boxes. |
| If `False`, draw horizontal boxes. |
| |
| whis : float or (float, float), default: 1.5 |
| The position of the whiskers. |
| |
| If a float, the lower whisker is at the lowest datum above |
| ``Q1 - whis*(Q3-Q1)``, and the upper whisker at the highest datum |
| below ``Q3 + whis*(Q3-Q1)``, where Q1 and Q3 are the first and |
| third quartiles. The default value of ``whis = 1.5`` corresponds |
| to Tukey's original definition of boxplots. |
| |
| If a pair of floats, they indicate the percentiles at which to |
| draw the whiskers (e.g., (5, 95)). In particular, setting this to |
| (0, 100) results in whiskers covering the whole range of the data. |
| |
| In the edge case where ``Q1 == Q3``, *whis* is automatically set |
| to (0, 100) (cover the whole range of the data) if *autorange* is |
| True. |
| |
| Beyond the whiskers, data are considered outliers and are plotted |
| as individual points. |
| |
| bootstrap : int, optional |
| Specifies whether to bootstrap the confidence intervals |
| around the median for notched boxplots. If *bootstrap* is |
| None, no bootstrapping is performed, and notches are |
| calculated using a Gaussian-based asymptotic approximation |
| (see McGill, R., Tukey, J.W., and Larsen, W.A., 1978, and |
| Kendall and Stuart, 1967). Otherwise, bootstrap specifies |
| the number of times to bootstrap the median to determine its |
| 95% confidence intervals. Values between 1000 and 10000 are |
| recommended. |
| |
| usermedians : 1D array-like, optional |
| A 1D array-like of length ``len(x)``. Each entry that is not |
| `None` forces the value of the median for the corresponding |
| dataset. For entries that are `None`, the medians are computed |
| by Matplotlib as normal. |
| |
| conf_intervals : array-like, optional |
| A 2D array-like of shape ``(len(x), 2)``. Each entry that is not |
| None forces the location of the corresponding notch (which is |
| only drawn if *notch* is `True`). For entries that are `None`, |
| the notches are computed by the method specified by the other |
| parameters (e.g., *bootstrap*). |
| |
| positions : array-like, optional |
| The positions of the boxes. The ticks and limits are |
| automatically set to match the positions. Defaults to |
| ``range(1, N+1)`` where N is the number of boxes to be drawn. |
| |
| widths : float or array-like |
| The widths of the boxes. The default is 0.5, or ``0.15*(distance |
| between extreme positions)``, if that is smaller. |
| |
| patch_artist : bool, default: False |
| If `False` produces boxes with the Line2D artist. Otherwise, |
| boxes are drawn with Patch artists. |
| |
| labels : sequence, optional |
| Labels for each dataset (one per dataset). |
| |
| manage_ticks : bool, default: True |
| If True, the tick locations and labels will be adjusted to match |
| the boxplot positions. |
| |
| autorange : bool, default: False |
| When `True` and the data are distributed such that the 25th and |
| 75th percentiles are equal, *whis* is set to (0, 100) such |
| that the whisker ends are at the minimum and maximum of the data. |
| |
| meanline : bool, default: False |
| If `True` (and *showmeans* is `True`), will try to render the |
| mean as a line spanning the full width of the box according to |
| *meanprops* (see below). Not recommended if *shownotches* is also |
| True. Otherwise, means will be shown as points. |
| |
| zorder : float, default: ``Line2D.zorder = 2`` |
| The zorder of the boxplot. |
| |
| Returns |
| ------- |
| dict |
| A dictionary mapping each component of the boxplot to a list |
| of the `.Line2D` instances created. That dictionary has the |
| following keys (assuming vertical boxplots): |
| |
| - ``boxes``: the main body of the boxplot showing the |
| quartiles and the median's confidence intervals if |
| enabled. |
| |
| - ``medians``: horizontal lines at the median of each box. |
| |
| - ``whiskers``: the vertical lines extending to the most |
| extreme, non-outlier data points. |
| |
| - ``caps``: the horizontal lines at the ends of the |
| whiskers. |
| |
| - ``fliers``: points representing data that extend beyond |
| the whiskers (fliers). |
| |
| - ``means``: points or lines representing the means. |
| |
| Other Parameters |
| ---------------- |
| showcaps : bool, default: True |
| Show the caps on the ends of whiskers. |
| showbox : bool, default: True |
| Show the central box. |
| showfliers : bool, default: True |
| Show the outliers beyond the caps. |
| showmeans : bool, default: False |
| Show the arithmetic means. |
| capprops : dict, default: None |
| The style of the caps. |
| capwidths : float or array, default: None |
| The widths of the caps. |
| boxprops : dict, default: None |
| The style of the box. |
| whiskerprops : dict, default: None |
| The style of the whiskers. |
| flierprops : dict, default: None |
| The style of the fliers. |
| medianprops : dict, default: None |
| The style of the median. |
| meanprops : dict, default: None |
| The style of the mean. |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| See Also |
| -------- |
| violinplot : Draw an estimate of the probability density function. |
| """ |
|
|
| |
| if whis is None: |
| whis = mpl.rcParams['boxplot.whiskers'] |
| if bootstrap is None: |
| bootstrap = mpl.rcParams['boxplot.bootstrap'] |
|
|
| bxpstats = cbook.boxplot_stats(x, whis=whis, bootstrap=bootstrap, |
| labels=labels, autorange=autorange) |
| if notch is None: |
| notch = mpl.rcParams['boxplot.notch'] |
| if vert is None: |
| vert = mpl.rcParams['boxplot.vertical'] |
| if patch_artist is None: |
| patch_artist = mpl.rcParams['boxplot.patchartist'] |
| if meanline is None: |
| meanline = mpl.rcParams['boxplot.meanline'] |
| if showmeans is None: |
| showmeans = mpl.rcParams['boxplot.showmeans'] |
| if showcaps is None: |
| showcaps = mpl.rcParams['boxplot.showcaps'] |
| if showbox is None: |
| showbox = mpl.rcParams['boxplot.showbox'] |
| if showfliers is None: |
| showfliers = mpl.rcParams['boxplot.showfliers'] |
|
|
| if boxprops is None: |
| boxprops = {} |
| if whiskerprops is None: |
| whiskerprops = {} |
| if capprops is None: |
| capprops = {} |
| if medianprops is None: |
| medianprops = {} |
| if meanprops is None: |
| meanprops = {} |
| if flierprops is None: |
| flierprops = {} |
|
|
| if patch_artist: |
| boxprops['linestyle'] = 'solid' |
| if 'color' in boxprops: |
| boxprops['edgecolor'] = boxprops.pop('color') |
|
|
| |
| |
| |
| |
| |
| if sym is not None: |
| |
| |
| |
| if sym == '': |
| |
| flierprops = dict(linestyle='none', marker='', color='none') |
| |
| showfliers = False |
| |
| else: |
| |
| |
| _, marker, color = _process_plot_format(sym) |
| |
| if marker is not None: |
| flierprops['marker'] = marker |
| |
| if color is not None: |
| |
| |
| |
| flierprops['color'] = color |
| flierprops['markerfacecolor'] = color |
| flierprops['markeredgecolor'] = color |
|
|
| |
| if usermedians is not None: |
| if (len(np.ravel(usermedians)) != len(bxpstats) or |
| np.shape(usermedians)[0] != len(bxpstats)): |
| raise ValueError( |
| "'usermedians' and 'x' have different lengths") |
| else: |
| |
| for stats, med in zip(bxpstats, usermedians): |
| if med is not None: |
| stats['med'] = med |
|
|
| if conf_intervals is not None: |
| if len(conf_intervals) != len(bxpstats): |
| raise ValueError( |
| "'conf_intervals' and 'x' have different lengths") |
| else: |
| for stats, ci in zip(bxpstats, conf_intervals): |
| if ci is not None: |
| if len(ci) != 2: |
| raise ValueError('each confidence interval must ' |
| 'have two values') |
| else: |
| if ci[0] is not None: |
| stats['cilo'] = ci[0] |
| if ci[1] is not None: |
| stats['cihi'] = ci[1] |
|
|
| artists = self.bxp(bxpstats, positions=positions, widths=widths, |
| vert=vert, patch_artist=patch_artist, |
| shownotches=notch, showmeans=showmeans, |
| showcaps=showcaps, showbox=showbox, |
| boxprops=boxprops, flierprops=flierprops, |
| medianprops=medianprops, meanprops=meanprops, |
| meanline=meanline, showfliers=showfliers, |
| capprops=capprops, whiskerprops=whiskerprops, |
| manage_ticks=manage_ticks, zorder=zorder, |
| capwidths=capwidths) |
| return artists |
|
|
| def bxp(self, bxpstats, positions=None, widths=None, vert=True, |
| patch_artist=False, shownotches=False, showmeans=False, |
| showcaps=True, showbox=True, showfliers=True, |
| boxprops=None, whiskerprops=None, flierprops=None, |
| medianprops=None, capprops=None, meanprops=None, |
| meanline=False, manage_ticks=True, zorder=None, |
| capwidths=None): |
| """ |
| Drawing function for box and whisker plots. |
| |
| Make a box and whisker plot for each column of *x* or each |
| vector in sequence *x*. The box extends from the lower to |
| upper quartile values of the data, with a line at the median. |
| The whiskers extend from the box to show the range of the |
| data. Flier points are those past the end of the whiskers. |
| |
| Parameters |
| ---------- |
| bxpstats : list of dicts |
| A list of dictionaries containing stats for each boxplot. |
| Required keys are: |
| |
| - ``med``: Median (scalar). |
| - ``q1``, ``q3``: First & third quartiles (scalars). |
| - ``whislo``, ``whishi``: Lower & upper whisker positions (scalars). |
| |
| Optional keys are: |
| |
| - ``mean``: Mean (scalar). Needed if ``showmeans=True``. |
| - ``fliers``: Data beyond the whiskers (array-like). |
| Needed if ``showfliers=True``. |
| - ``cilo``, ``cihi``: Lower & upper confidence intervals |
| about the median. Needed if ``shownotches=True``. |
| - ``label``: Name of the dataset (str). If available, |
| this will be used a tick label for the boxplot |
| |
| positions : array-like, default: [1, 2, ..., n] |
| The positions of the boxes. The ticks and limits |
| are automatically set to match the positions. |
| |
| widths : float or array-like, default: None |
| The widths of the boxes. The default is |
| ``clip(0.15*(distance between extreme positions), 0.15, 0.5)``. |
| |
| capwidths : float or array-like, default: None |
| Either a scalar or a vector and sets the width of each cap. |
| The default is ``0.5*(width of the box)``, see *widths*. |
| |
| vert : bool, default: True |
| If `True` (default), makes the boxes vertical. |
| If `False`, makes horizontal boxes. |
| |
| patch_artist : bool, default: False |
| If `False` produces boxes with the `.Line2D` artist. |
| If `True` produces boxes with the `~matplotlib.patches.Patch` artist. |
| |
| shownotches, showmeans, showcaps, showbox, showfliers : bool |
| Whether to draw the CI notches, the mean value (both default to |
| False), the caps, the box, and the fliers (all three default to |
| True). |
| |
| boxprops, whiskerprops, capprops, flierprops, medianprops, meanprops :\ |
| dict, optional |
| Artist properties for the boxes, whiskers, caps, fliers, medians, and |
| means. |
| |
| meanline : bool, default: False |
| If `True` (and *showmeans* is `True`), will try to render the mean |
| as a line spanning the full width of the box according to |
| *meanprops*. Not recommended if *shownotches* is also True. |
| Otherwise, means will be shown as points. |
| |
| manage_ticks : bool, default: True |
| If True, the tick locations and labels will be adjusted to match the |
| boxplot positions. |
| |
| zorder : float, default: ``Line2D.zorder = 2`` |
| The zorder of the resulting boxplot. |
| |
| Returns |
| ------- |
| dict |
| A dictionary mapping each component of the boxplot to a list |
| of the `.Line2D` instances created. That dictionary has the |
| following keys (assuming vertical boxplots): |
| |
| - ``boxes``: main bodies of the boxplot showing the quartiles, and |
| the median's confidence intervals if enabled. |
| - ``medians``: horizontal lines at the median of each box. |
| - ``whiskers``: vertical lines up to the last non-outlier data. |
| - ``caps``: horizontal lines at the ends of the whiskers. |
| - ``fliers``: points representing data beyond the whiskers (fliers). |
| - ``means``: points or lines representing the means. |
| |
| Examples |
| -------- |
| .. plot:: gallery/statistics/bxp.py |
| """ |
| |
| medianprops = { |
| "solid_capstyle": "butt", |
| "dash_capstyle": "butt", |
| **(medianprops or {}), |
| } |
| meanprops = { |
| "solid_capstyle": "butt", |
| "dash_capstyle": "butt", |
| **(meanprops or {}), |
| } |
|
|
| |
| whiskers = [] |
| caps = [] |
| boxes = [] |
| medians = [] |
| means = [] |
| fliers = [] |
|
|
| |
| datalabels = [] |
|
|
| |
| if zorder is None: |
| zorder = mlines.Line2D.zorder |
|
|
| zdelta = 0.1 |
|
|
| def merge_kw_rc(subkey, explicit, zdelta=0, usemarker=True): |
| d = {k.split('.')[-1]: v for k, v in mpl.rcParams.items() |
| if k.startswith(f'boxplot.{subkey}props')} |
| d['zorder'] = zorder + zdelta |
| if not usemarker: |
| d['marker'] = '' |
| d.update(cbook.normalize_kwargs(explicit, mlines.Line2D)) |
| return d |
|
|
| box_kw = { |
| 'linestyle': mpl.rcParams['boxplot.boxprops.linestyle'], |
| 'linewidth': mpl.rcParams['boxplot.boxprops.linewidth'], |
| 'edgecolor': mpl.rcParams['boxplot.boxprops.color'], |
| 'facecolor': ('white' if mpl.rcParams['_internal.classic_mode'] |
| else mpl.rcParams['patch.facecolor']), |
| 'zorder': zorder, |
| **cbook.normalize_kwargs(boxprops, mpatches.PathPatch) |
| } if patch_artist else merge_kw_rc('box', boxprops, usemarker=False) |
| whisker_kw = merge_kw_rc('whisker', whiskerprops, usemarker=False) |
| cap_kw = merge_kw_rc('cap', capprops, usemarker=False) |
| flier_kw = merge_kw_rc('flier', flierprops) |
| median_kw = merge_kw_rc('median', medianprops, zdelta, usemarker=False) |
| mean_kw = merge_kw_rc('mean', meanprops, zdelta) |
| removed_prop = 'marker' if meanline else 'linestyle' |
| |
| if meanprops is None or removed_prop not in meanprops: |
| mean_kw[removed_prop] = '' |
|
|
| |
| maybe_swap = slice(None) if vert else slice(None, None, -1) |
|
|
| def do_plot(xs, ys, **kwargs): |
| return self.plot(*[xs, ys][maybe_swap], **kwargs)[0] |
|
|
| def do_patch(xs, ys, **kwargs): |
| path = mpath.Path._create_closed( |
| np.column_stack([xs, ys][maybe_swap])) |
| patch = mpatches.PathPatch(path, **kwargs) |
| self.add_artist(patch) |
| return patch |
|
|
| |
| N = len(bxpstats) |
| datashape_message = ("List of boxplot statistics and `{0}` " |
| "values must have same the length") |
| |
| if positions is None: |
| positions = list(range(1, N + 1)) |
| elif len(positions) != N: |
| raise ValueError(datashape_message.format("positions")) |
|
|
| positions = np.array(positions) |
| if len(positions) > 0 and not all(isinstance(p, Real) for p in positions): |
| raise TypeError("positions should be an iterable of numbers") |
|
|
| |
| if widths is None: |
| widths = [np.clip(0.15 * np.ptp(positions), 0.15, 0.5)] * N |
| elif np.isscalar(widths): |
| widths = [widths] * N |
| elif len(widths) != N: |
| raise ValueError(datashape_message.format("widths")) |
|
|
| |
| if capwidths is None: |
| capwidths = 0.5 * np.array(widths) |
| elif np.isscalar(capwidths): |
| capwidths = [capwidths] * N |
| elif len(capwidths) != N: |
| raise ValueError(datashape_message.format("capwidths")) |
|
|
| for pos, width, stats, capwidth in zip(positions, widths, bxpstats, |
| capwidths): |
| |
| datalabels.append(stats.get('label', pos)) |
|
|
| |
| whis_x = [pos, pos] |
| whislo_y = [stats['q1'], stats['whislo']] |
| whishi_y = [stats['q3'], stats['whishi']] |
| |
| cap_left = pos - capwidth * 0.5 |
| cap_right = pos + capwidth * 0.5 |
| cap_x = [cap_left, cap_right] |
| cap_lo = np.full(2, stats['whislo']) |
| cap_hi = np.full(2, stats['whishi']) |
| |
| box_left = pos - width * 0.5 |
| box_right = pos + width * 0.5 |
| med_y = [stats['med'], stats['med']] |
| |
| if shownotches: |
| notch_left = pos - width * 0.25 |
| notch_right = pos + width * 0.25 |
| box_x = [box_left, box_right, box_right, notch_right, |
| box_right, box_right, box_left, box_left, notch_left, |
| box_left, box_left] |
| box_y = [stats['q1'], stats['q1'], stats['cilo'], |
| stats['med'], stats['cihi'], stats['q3'], |
| stats['q3'], stats['cihi'], stats['med'], |
| stats['cilo'], stats['q1']] |
| med_x = [notch_left, notch_right] |
| |
| else: |
| box_x = [box_left, box_right, box_right, box_left, box_left] |
| box_y = [stats['q1'], stats['q1'], stats['q3'], stats['q3'], |
| stats['q1']] |
| med_x = [box_left, box_right] |
|
|
| |
| if showbox: |
| do_box = do_patch if patch_artist else do_plot |
| boxes.append(do_box(box_x, box_y, **box_kw)) |
| |
| whiskers.append(do_plot(whis_x, whislo_y, **whisker_kw)) |
| whiskers.append(do_plot(whis_x, whishi_y, **whisker_kw)) |
| |
| if showcaps: |
| caps.append(do_plot(cap_x, cap_lo, **cap_kw)) |
| caps.append(do_plot(cap_x, cap_hi, **cap_kw)) |
| |
| medians.append(do_plot(med_x, med_y, **median_kw)) |
| |
| if showmeans: |
| if meanline: |
| means.append(do_plot( |
| [box_left, box_right], [stats['mean'], stats['mean']], |
| **mean_kw |
| )) |
| else: |
| means.append(do_plot([pos], [stats['mean']], **mean_kw)) |
| |
| if showfliers: |
| flier_x = np.full(len(stats['fliers']), pos, dtype=np.float64) |
| flier_y = stats['fliers'] |
| fliers.append(do_plot(flier_x, flier_y, **flier_kw)) |
|
|
| if manage_ticks: |
| axis_name = "x" if vert else "y" |
| interval = getattr(self.dataLim, f"interval{axis_name}") |
| axis = self._axis_map[axis_name] |
| positions = axis.convert_units(positions) |
| |
| |
| |
| |
| |
| |
| interval[:] = (min(interval[0], min(positions) - .5), |
| max(interval[1], max(positions) + .5)) |
| for median, position in zip(medians, positions): |
| getattr(median.sticky_edges, axis_name).extend( |
| [position - .5, position + .5]) |
| |
| locator = axis.get_major_locator() |
| if not isinstance(axis.get_major_locator(), |
| mticker.FixedLocator): |
| locator = mticker.FixedLocator([]) |
| axis.set_major_locator(locator) |
| locator.locs = np.array([*locator.locs, *positions]) |
| formatter = axis.get_major_formatter() |
| if not isinstance(axis.get_major_formatter(), |
| mticker.FixedFormatter): |
| formatter = mticker.FixedFormatter([]) |
| axis.set_major_formatter(formatter) |
| formatter.seq = [*formatter.seq, *datalabels] |
|
|
| self._request_autoscale_view() |
|
|
| return dict(whiskers=whiskers, caps=caps, boxes=boxes, |
| medians=medians, fliers=fliers, means=means) |
|
|
| @staticmethod |
| def _parse_scatter_color_args(c, edgecolors, kwargs, xsize, |
| get_next_color_func): |
| """ |
| Helper function to process color related arguments of `.Axes.scatter`. |
| |
| Argument precedence for facecolors: |
| |
| - c (if not None) |
| - kwargs['facecolor'] |
| - kwargs['facecolors'] |
| - kwargs['color'] (==kwcolor) |
| - 'b' if in classic mode else the result of ``get_next_color_func()`` |
| |
| Argument precedence for edgecolors: |
| |
| - kwargs['edgecolor'] |
| - edgecolors (is an explicit kw argument in scatter()) |
| - kwargs['color'] (==kwcolor) |
| - 'face' if not in classic mode else None |
| |
| Parameters |
| ---------- |
| c : color or sequence or sequence of color or None |
| See argument description of `.Axes.scatter`. |
| edgecolors : color or sequence of color or {'face', 'none'} or None |
| See argument description of `.Axes.scatter`. |
| kwargs : dict |
| Additional kwargs. If these keys exist, we pop and process them: |
| 'facecolors', 'facecolor', 'edgecolor', 'color' |
| Note: The dict is modified by this function. |
| xsize : int |
| The size of the x and y arrays passed to `.Axes.scatter`. |
| get_next_color_func : callable |
| A callable that returns a color. This color is used as facecolor |
| if no other color is provided. |
| |
| Note, that this is a function rather than a fixed color value to |
| support conditional evaluation of the next color. As of the |
| current implementation obtaining the next color from the |
| property cycle advances the cycle. This must only happen if we |
| actually use the color, which will only be decided within this |
| method. |
| |
| Returns |
| ------- |
| c |
| The input *c* if it was not *None*, else a color derived from the |
| other inputs or defaults. |
| colors : array(N, 4) or None |
| The facecolors as RGBA values, or *None* if a colormap is used. |
| edgecolors |
| The edgecolor. |
| |
| """ |
| facecolors = kwargs.pop('facecolors', None) |
| facecolors = kwargs.pop('facecolor', facecolors) |
| edgecolors = kwargs.pop('edgecolor', edgecolors) |
|
|
| kwcolor = kwargs.pop('color', None) |
|
|
| if kwcolor is not None and c is not None: |
| raise ValueError("Supply a 'c' argument or a 'color'" |
| " kwarg but not both; they differ but" |
| " their functionalities overlap.") |
|
|
| if kwcolor is not None: |
| try: |
| mcolors.to_rgba_array(kwcolor) |
| except ValueError as err: |
| raise ValueError( |
| "'color' kwarg must be a color or sequence of color " |
| "specs. For a sequence of values to be color-mapped, use " |
| "the 'c' argument instead.") from err |
| if edgecolors is None: |
| edgecolors = kwcolor |
| if facecolors is None: |
| facecolors = kwcolor |
|
|
| if edgecolors is None and not mpl.rcParams['_internal.classic_mode']: |
| edgecolors = mpl.rcParams['scatter.edgecolors'] |
|
|
| c_was_none = c is None |
| if c is None: |
| c = (facecolors if facecolors is not None |
| else "b" if mpl.rcParams['_internal.classic_mode'] |
| else get_next_color_func()) |
| c_is_string_or_strings = ( |
| isinstance(c, str) |
| or (np.iterable(c) and len(c) > 0 |
| and isinstance(cbook._safe_first_finite(c), str))) |
|
|
| def invalid_shape_exception(csize, xsize): |
| return ValueError( |
| f"'c' argument has {csize} elements, which is inconsistent " |
| f"with 'x' and 'y' with size {xsize}.") |
|
|
| c_is_mapped = False |
| valid_shape = True |
| if not c_was_none and kwcolor is None and not c_is_string_or_strings: |
| try: |
| c = np.asanyarray(c, dtype=float) |
| except ValueError: |
| pass |
| else: |
| |
| |
| if c.shape == (1, 4) or c.shape == (1, 3): |
| c_is_mapped = False |
| if c.size != xsize: |
| valid_shape = False |
| |
| |
| elif c.size == xsize: |
| c = c.ravel() |
| c_is_mapped = True |
| else: |
| if c.shape in ((3,), (4,)): |
| _api.warn_external( |
| "*c* argument looks like a single numeric RGB or " |
| "RGBA sequence, which should be avoided as value-" |
| "mapping will have precedence in case its length " |
| "matches with *x* & *y*. Please use the *color* " |
| "keyword-argument or provide a 2D array " |
| "with a single row if you intend to specify " |
| "the same RGB or RGBA value for all points.") |
| valid_shape = False |
| if not c_is_mapped: |
| try: |
| colors = mcolors.to_rgba_array(c) |
| except (TypeError, ValueError) as err: |
| if "RGBA values should be within 0-1 range" in str(err): |
| raise |
| else: |
| if not valid_shape: |
| raise invalid_shape_exception(c.size, xsize) from err |
| |
| |
| raise ValueError( |
| f"'c' argument must be a color, a sequence of colors, " |
| f"or a sequence of numbers, not {c!r}") from err |
| else: |
| if len(colors) not in (0, 1, xsize): |
| |
| |
| raise invalid_shape_exception(len(colors), xsize) |
| else: |
| colors = None |
| return c, colors, edgecolors |
|
|
| @_preprocess_data(replace_names=["x", "y", "s", "linewidths", |
| "edgecolors", "c", "facecolor", |
| "facecolors", "color"], |
| label_namer="y") |
| @_docstring.interpd |
| def scatter(self, x, y, s=None, c=None, marker=None, cmap=None, norm=None, |
| vmin=None, vmax=None, alpha=None, linewidths=None, *, |
| edgecolors=None, plotnonfinite=False, **kwargs): |
| """ |
| A scatter plot of *y* vs. *x* with varying marker size and/or color. |
| |
| Parameters |
| ---------- |
| x, y : float or array-like, shape (n, ) |
| The data positions. |
| |
| s : float or array-like, shape (n, ), optional |
| The marker size in points**2 (typographic points are 1/72 in.). |
| Default is ``rcParams['lines.markersize'] ** 2``. |
| |
| The linewidth and edgecolor can visually interact with the marker |
| size, and can lead to artifacts if the marker size is smaller than |
| the linewidth. |
| |
| If the linewidth is greater than 0 and the edgecolor is anything |
| but *'none'*, then the effective size of the marker will be |
| increased by half the linewidth because the stroke will be centered |
| on the edge of the shape. |
| |
| To eliminate the marker edge either set *linewidth=0* or |
| *edgecolor='none'*. |
| |
| c : array-like or list of colors or color, optional |
| The marker colors. Possible values: |
| |
| - A scalar or sequence of n numbers to be mapped to colors using |
| *cmap* and *norm*. |
| - A 2D array in which the rows are RGB or RGBA. |
| - A sequence of colors of length n. |
| - A single color format string. |
| |
| Note that *c* should not be a single numeric RGB or RGBA sequence |
| because that is indistinguishable from an array of values to be |
| colormapped. If you want to specify the same RGB or RGBA value for |
| all points, use a 2D array with a single row. Otherwise, |
| value-matching will have precedence in case of a size matching with |
| *x* and *y*. |
| |
| If you wish to specify a single color for all points |
| prefer the *color* keyword argument. |
| |
| Defaults to `None`. In that case the marker color is determined |
| by the value of *color*, *facecolor* or *facecolors*. In case |
| those are not specified or `None`, the marker color is determined |
| by the next color of the ``Axes``' current "shape and fill" color |
| cycle. This cycle defaults to :rc:`axes.prop_cycle`. |
| |
| marker : `~.markers.MarkerStyle`, default: :rc:`scatter.marker` |
| The marker style. *marker* can be either an instance of the class |
| or the text shorthand for a particular marker. |
| See :mod:`matplotlib.markers` for more information about marker |
| styles. |
| |
| %(cmap_doc)s |
| |
| This parameter is ignored if *c* is RGB(A). |
| |
| %(norm_doc)s |
| |
| This parameter is ignored if *c* is RGB(A). |
| |
| %(vmin_vmax_doc)s |
| |
| This parameter is ignored if *c* is RGB(A). |
| |
| alpha : float, default: None |
| The alpha blending value, between 0 (transparent) and 1 (opaque). |
| |
| linewidths : float or array-like, default: :rc:`lines.linewidth` |
| The linewidth of the marker edges. Note: The default *edgecolors* |
| is 'face'. You may want to change this as well. |
| |
| edgecolors : {'face', 'none', *None*} or color or sequence of color, \ |
| default: :rc:`scatter.edgecolors` |
| The edge color of the marker. Possible values: |
| |
| - 'face': The edge color will always be the same as the face color. |
| - 'none': No patch boundary will be drawn. |
| - A color or sequence of colors. |
| |
| For non-filled markers, *edgecolors* is ignored. Instead, the color |
| is determined like with 'face', i.e. from *c*, *colors*, or |
| *facecolors*. |
| |
| plotnonfinite : bool, default: False |
| Whether to plot points with nonfinite *c* (i.e. ``inf``, ``-inf`` |
| or ``nan``). If ``True`` the points are drawn with the *bad* |
| colormap color (see `.Colormap.set_bad`). |
| |
| Returns |
| ------- |
| `~matplotlib.collections.PathCollection` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| **kwargs : `~matplotlib.collections.Collection` properties |
| |
| See Also |
| -------- |
| plot : To plot scatter plots when markers are identical in size and |
| color. |
| |
| Notes |
| ----- |
| * The `.plot` function will be faster for scatterplots where markers |
| don't vary in size or color. |
| |
| * Any or all of *x*, *y*, *s*, and *c* may be masked arrays, in which |
| case all masks will be combined and only unmasked points will be |
| plotted. |
| |
| * Fundamentally, scatter works with 1D arrays; *x*, *y*, *s*, and *c* |
| may be input as N-D arrays, but within scatter they will be |
| flattened. The exception is *c*, which will be flattened only if its |
| size matches the size of *x* and *y*. |
| |
| """ |
| |
| |
| if edgecolors is not None: |
| kwargs.update({'edgecolors': edgecolors}) |
| if linewidths is not None: |
| kwargs.update({'linewidths': linewidths}) |
|
|
| kwargs = cbook.normalize_kwargs(kwargs, mcoll.Collection) |
| |
| |
| linewidths = kwargs.pop('linewidth', None) |
| edgecolors = kwargs.pop('edgecolor', None) |
| |
| x, y = self._process_unit_info([("x", x), ("y", y)], kwargs) |
| |
| |
| x = np.ma.ravel(x) |
| y = np.ma.ravel(y) |
| if x.size != y.size: |
| raise ValueError("x and y must be the same size") |
|
|
| if s is None: |
| s = (20 if mpl.rcParams['_internal.classic_mode'] else |
| mpl.rcParams['lines.markersize'] ** 2.0) |
| s = np.ma.ravel(s) |
| if (len(s) not in (1, x.size) or |
| (not np.issubdtype(s.dtype, np.floating) and |
| not np.issubdtype(s.dtype, np.integer))): |
| raise ValueError( |
| "s must be a scalar, " |
| "or float array-like with the same size as x and y") |
|
|
| |
| orig_edgecolor = edgecolors |
| if edgecolors is None: |
| orig_edgecolor = kwargs.get('edgecolor', None) |
| c, colors, edgecolors = \ |
| self._parse_scatter_color_args( |
| c, edgecolors, kwargs, x.size, |
| get_next_color_func=self._get_patches_for_fill.get_next_color) |
|
|
| if plotnonfinite and colors is None: |
| c = np.ma.masked_invalid(c) |
| x, y, s, edgecolors, linewidths = \ |
| cbook._combine_masks(x, y, s, edgecolors, linewidths) |
| else: |
| x, y, s, c, colors, edgecolors, linewidths = \ |
| cbook._combine_masks( |
| x, y, s, c, colors, edgecolors, linewidths) |
| |
| if (x.size in (3, 4) |
| and np.ma.is_masked(edgecolors) |
| and not np.ma.is_masked(orig_edgecolor)): |
| edgecolors = edgecolors.data |
|
|
| scales = s |
|
|
| |
| if marker is None: |
| marker = mpl.rcParams['scatter.marker'] |
|
|
| if isinstance(marker, mmarkers.MarkerStyle): |
| marker_obj = marker |
| else: |
| marker_obj = mmarkers.MarkerStyle(marker) |
|
|
| path = marker_obj.get_path().transformed( |
| marker_obj.get_transform()) |
| if not marker_obj.is_filled(): |
| if orig_edgecolor is not None: |
| _api.warn_external( |
| f"You passed a edgecolor/edgecolors ({orig_edgecolor!r}) " |
| f"for an unfilled marker ({marker!r}). Matplotlib is " |
| "ignoring the edgecolor in favor of the facecolor. This " |
| "behavior may change in the future." |
| ) |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| if marker_obj.get_fillstyle() == 'none': |
| |
| edgecolors = colors |
| |
| |
| |
| colors = 'none' |
| else: |
| |
| |
| edgecolors = 'face' |
|
|
| if linewidths is None: |
| linewidths = mpl.rcParams['lines.linewidth'] |
| elif np.iterable(linewidths): |
| linewidths = [ |
| lw if lw is not None else mpl.rcParams['lines.linewidth'] |
| for lw in linewidths] |
|
|
| offsets = np.ma.column_stack([x, y]) |
|
|
| collection = mcoll.PathCollection( |
| (path,), scales, |
| facecolors=colors, |
| edgecolors=edgecolors, |
| linewidths=linewidths, |
| offsets=offsets, |
| offset_transform=kwargs.pop('transform', self.transData), |
| alpha=alpha, |
| ) |
| collection.set_transform(mtransforms.IdentityTransform()) |
| if colors is None: |
| collection.set_array(c) |
| collection.set_cmap(cmap) |
| collection.set_norm(norm) |
| collection._scale_norm(norm, vmin, vmax) |
| else: |
| extra_kwargs = { |
| 'cmap': cmap, 'norm': norm, 'vmin': vmin, 'vmax': vmax |
| } |
| extra_keys = [k for k, v in extra_kwargs.items() if v is not None] |
| if any(extra_keys): |
| keys_str = ", ".join(f"'{k}'" for k in extra_keys) |
| _api.warn_external( |
| "No data for colormapping provided via 'c'. " |
| f"Parameters {keys_str} will be ignored") |
| collection._internal_update(kwargs) |
|
|
| |
| |
| |
| |
| |
| if mpl.rcParams['_internal.classic_mode']: |
| if self._xmargin < 0.05 and x.size > 0: |
| self.set_xmargin(0.05) |
| if self._ymargin < 0.05 and x.size > 0: |
| self.set_ymargin(0.05) |
|
|
| self.add_collection(collection) |
| self._request_autoscale_view() |
|
|
| return collection |
|
|
| @_preprocess_data(replace_names=["x", "y", "C"], label_namer="y") |
| @_docstring.dedent_interpd |
| def hexbin(self, x, y, C=None, gridsize=100, bins=None, |
| xscale='linear', yscale='linear', extent=None, |
| cmap=None, norm=None, vmin=None, vmax=None, |
| alpha=None, linewidths=None, edgecolors='face', |
| reduce_C_function=np.mean, mincnt=None, marginals=False, |
| **kwargs): |
| """ |
| Make a 2D hexagonal binning plot of points *x*, *y*. |
| |
| If *C* is *None*, the value of the hexagon is determined by the number |
| of points in the hexagon. Otherwise, *C* specifies values at the |
| coordinate (x[i], y[i]). For each hexagon, these values are reduced |
| using *reduce_C_function*. |
| |
| Parameters |
| ---------- |
| x, y : array-like |
| The data positions. *x* and *y* must be of the same length. |
| |
| C : array-like, optional |
| If given, these values are accumulated in the bins. Otherwise, |
| every point has a value of 1. Must be of the same length as *x* |
| and *y*. |
| |
| gridsize : int or (int, int), default: 100 |
| If a single int, the number of hexagons in the *x*-direction. |
| The number of hexagons in the *y*-direction is chosen such that |
| the hexagons are approximately regular. |
| |
| Alternatively, if a tuple (*nx*, *ny*), the number of hexagons |
| in the *x*-direction and the *y*-direction. In the |
| *y*-direction, counting is done along vertically aligned |
| hexagons, not along the zig-zag chains of hexagons; see the |
| following illustration. |
| |
| .. plot:: |
| |
| import numpy |
| import matplotlib.pyplot as plt |
| |
| np.random.seed(19680801) |
| n= 300 |
| x = np.random.standard_normal(n) |
| y = np.random.standard_normal(n) |
| |
| fig, ax = plt.subplots(figsize=(4, 4)) |
| h = ax.hexbin(x, y, gridsize=(5, 3)) |
| hx, hy = h.get_offsets().T |
| ax.plot(hx[24::3], hy[24::3], 'ro-') |
| ax.plot(hx[-3:], hy[-3:], 'ro-') |
| ax.set_title('gridsize=(5, 3)') |
| ax.axis('off') |
| |
| To get approximately regular hexagons, choose |
| :math:`n_x = \\sqrt{3}\\,n_y`. |
| |
| bins : 'log' or int or sequence, default: None |
| Discretization of the hexagon values. |
| |
| - If *None*, no binning is applied; the color of each hexagon |
| directly corresponds to its count value. |
| - If 'log', use a logarithmic scale for the colormap. |
| Internally, :math:`log_{10}(i+1)` is used to determine the |
| hexagon color. This is equivalent to ``norm=LogNorm()``. |
| - If an integer, divide the counts in the specified number |
| of bins, and color the hexagons accordingly. |
| - If a sequence of values, the values of the lower bound of |
| the bins to be used. |
| |
| xscale : {'linear', 'log'}, default: 'linear' |
| Use a linear or log10 scale on the horizontal axis. |
| |
| yscale : {'linear', 'log'}, default: 'linear' |
| Use a linear or log10 scale on the vertical axis. |
| |
| mincnt : int > 0, default: *None* |
| If not *None*, only display cells with more than *mincnt* |
| number of points in the cell. |
| |
| marginals : bool, default: *False* |
| If marginals is *True*, plot the marginal density as |
| colormapped rectangles along the bottom of the x-axis and |
| left of the y-axis. |
| |
| extent : 4-tuple of float, default: *None* |
| The limits of the bins (xmin, xmax, ymin, ymax). |
| The default assigns the limits based on |
| *gridsize*, *x*, *y*, *xscale* and *yscale*. |
| |
| If *xscale* or *yscale* is set to 'log', the limits are |
| expected to be the exponent for a power of 10. E.g. for |
| x-limits of 1 and 50 in 'linear' scale and y-limits |
| of 10 and 1000 in 'log' scale, enter (1, 50, 1, 3). |
| |
| Returns |
| ------- |
| `~matplotlib.collections.PolyCollection` |
| A `.PolyCollection` defining the hexagonal bins. |
| |
| - `.PolyCollection.get_offsets` contains a Mx2 array containing |
| the x, y positions of the M hexagon centers. |
| - `.PolyCollection.get_array` contains the values of the M |
| hexagons. |
| |
| If *marginals* is *True*, horizontal |
| bar and vertical bar (both PolyCollections) will be attached |
| to the return collection as attributes *hbar* and *vbar*. |
| |
| Other Parameters |
| ---------------- |
| %(cmap_doc)s |
| |
| %(norm_doc)s |
| |
| %(vmin_vmax_doc)s |
| |
| alpha : float between 0 and 1, optional |
| The alpha blending value, between 0 (transparent) and 1 (opaque). |
| |
| linewidths : float, default: *None* |
| If *None*, defaults to :rc:`patch.linewidth`. |
| |
| edgecolors : {'face', 'none', *None*} or color, default: 'face' |
| The color of the hexagon edges. Possible values are: |
| |
| - 'face': Draw the edges in the same color as the fill color. |
| - 'none': No edges are drawn. This can sometimes lead to unsightly |
| unpainted pixels between the hexagons. |
| - *None*: Draw outlines in the default color. |
| - An explicit color. |
| |
| reduce_C_function : callable, default: `numpy.mean` |
| The function to aggregate *C* within the bins. It is ignored if |
| *C* is not given. This must have the signature:: |
| |
| def reduce_C_function(C: array) -> float |
| |
| Commonly used functions are: |
| |
| - `numpy.mean`: average of the points |
| - `numpy.sum`: integral of the point values |
| - `numpy.amax`: value taken from the largest point |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs : `~matplotlib.collections.PolyCollection` properties |
| All other keyword arguments are passed on to `.PolyCollection`: |
| |
| %(PolyCollection:kwdoc)s |
| |
| See Also |
| -------- |
| hist2d : 2D histogram rectangular bins |
| """ |
| self._process_unit_info([("x", x), ("y", y)], kwargs, convert=False) |
|
|
| x, y, C = cbook.delete_masked_points(x, y, C) |
|
|
| |
| if np.iterable(gridsize): |
| nx, ny = gridsize |
| else: |
| nx = gridsize |
| ny = int(nx / math.sqrt(3)) |
| |
| x = np.asarray(x, float) |
| y = np.asarray(y, float) |
|
|
| |
| tx = x |
| ty = y |
|
|
| if xscale == 'log': |
| if np.any(x <= 0.0): |
| raise ValueError( |
| "x contains non-positive values, so cannot be log-scaled") |
| tx = np.log10(tx) |
| if yscale == 'log': |
| if np.any(y <= 0.0): |
| raise ValueError( |
| "y contains non-positive values, so cannot be log-scaled") |
| ty = np.log10(ty) |
| if extent is not None: |
| xmin, xmax, ymin, ymax = extent |
| else: |
| xmin, xmax = (tx.min(), tx.max()) if len(x) else (0, 1) |
| ymin, ymax = (ty.min(), ty.max()) if len(y) else (0, 1) |
|
|
| |
| xmin, xmax = mtransforms.nonsingular(xmin, xmax, expander=0.1) |
| ymin, ymax = mtransforms.nonsingular(ymin, ymax, expander=0.1) |
|
|
| nx1 = nx + 1 |
| ny1 = ny + 1 |
| nx2 = nx |
| ny2 = ny |
| n = nx1 * ny1 + nx2 * ny2 |
|
|
| |
| |
| padding = 1.e-9 * (xmax - xmin) |
| xmin -= padding |
| xmax += padding |
| sx = (xmax - xmin) / nx |
| sy = (ymax - ymin) / ny |
| |
| ix = (tx - xmin) / sx |
| iy = (ty - ymin) / sy |
| ix1 = np.round(ix).astype(int) |
| iy1 = np.round(iy).astype(int) |
| ix2 = np.floor(ix).astype(int) |
| iy2 = np.floor(iy).astype(int) |
| |
| i1 = np.where((0 <= ix1) & (ix1 < nx1) & (0 <= iy1) & (iy1 < ny1), |
| ix1 * ny1 + iy1 + 1, 0) |
| i2 = np.where((0 <= ix2) & (ix2 < nx2) & (0 <= iy2) & (iy2 < ny2), |
| ix2 * ny2 + iy2 + 1, 0) |
|
|
| d1 = (ix - ix1) ** 2 + 3.0 * (iy - iy1) ** 2 |
| d2 = (ix - ix2 - 0.5) ** 2 + 3.0 * (iy - iy2 - 0.5) ** 2 |
| bdist = (d1 < d2) |
|
|
| if C is None: |
| counts1 = np.bincount(i1[bdist], minlength=1 + nx1 * ny1)[1:] |
| counts2 = np.bincount(i2[~bdist], minlength=1 + nx2 * ny2)[1:] |
| accum = np.concatenate([counts1, counts2]).astype(float) |
| if mincnt is not None: |
| accum[accum < mincnt] = np.nan |
| C = np.ones(len(x)) |
| else: |
| |
| Cs_at_i1 = [[] for _ in range(1 + nx1 * ny1)] |
| Cs_at_i2 = [[] for _ in range(1 + nx2 * ny2)] |
| for i in range(len(x)): |
| if bdist[i]: |
| Cs_at_i1[i1[i]].append(C[i]) |
| else: |
| Cs_at_i2[i2[i]].append(C[i]) |
| if mincnt is None: |
| mincnt = 0 |
| accum = np.array( |
| [reduce_C_function(acc) if len(acc) >= mincnt else np.nan |
| for Cs_at_i in [Cs_at_i1, Cs_at_i2] |
| for acc in Cs_at_i[1:]], |
| float) |
|
|
| good_idxs = ~np.isnan(accum) |
|
|
| offsets = np.zeros((n, 2), float) |
| offsets[:nx1 * ny1, 0] = np.repeat(np.arange(nx1), ny1) |
| offsets[:nx1 * ny1, 1] = np.tile(np.arange(ny1), nx1) |
| offsets[nx1 * ny1:, 0] = np.repeat(np.arange(nx2) + 0.5, ny2) |
| offsets[nx1 * ny1:, 1] = np.tile(np.arange(ny2), nx2) + 0.5 |
| offsets[:, 0] *= sx |
| offsets[:, 1] *= sy |
| offsets[:, 0] += xmin |
| offsets[:, 1] += ymin |
| |
| offsets = offsets[good_idxs, :] |
| accum = accum[good_idxs] |
|
|
| polygon = [sx, sy / 3] * np.array( |
| [[.5, -.5], [.5, .5], [0., 1.], [-.5, .5], [-.5, -.5], [0., -1.]]) |
|
|
| if linewidths is None: |
| linewidths = [mpl.rcParams['patch.linewidth']] |
|
|
| if xscale == 'log' or yscale == 'log': |
| polygons = np.expand_dims(polygon, 0) + np.expand_dims(offsets, 1) |
| if xscale == 'log': |
| polygons[:, :, 0] = 10.0 ** polygons[:, :, 0] |
| xmin = 10.0 ** xmin |
| xmax = 10.0 ** xmax |
| self.set_xscale(xscale) |
| if yscale == 'log': |
| polygons[:, :, 1] = 10.0 ** polygons[:, :, 1] |
| ymin = 10.0 ** ymin |
| ymax = 10.0 ** ymax |
| self.set_yscale(yscale) |
| collection = mcoll.PolyCollection( |
| polygons, |
| edgecolors=edgecolors, |
| linewidths=linewidths, |
| ) |
| else: |
| collection = mcoll.PolyCollection( |
| [polygon], |
| edgecolors=edgecolors, |
| linewidths=linewidths, |
| offsets=offsets, |
| offset_transform=mtransforms.AffineDeltaTransform( |
| self.transData), |
| ) |
|
|
| |
| if bins == 'log': |
| if norm is not None: |
| _api.warn_external("Only one of 'bins' and 'norm' arguments " |
| f"can be supplied, ignoring bins={bins}") |
| else: |
| norm = mcolors.LogNorm(vmin=vmin, vmax=vmax) |
| vmin = vmax = None |
| bins = None |
|
|
| |
| if norm is not None: |
| if norm.vmin is None and norm.vmax is None: |
| norm.autoscale(accum) |
|
|
| if bins is not None: |
| if not np.iterable(bins): |
| minimum, maximum = min(accum), max(accum) |
| bins -= 1 |
| bins = minimum + (maximum - minimum) * np.arange(bins) / bins |
| bins = np.sort(bins) |
| accum = bins.searchsorted(accum) |
|
|
| collection.set_array(accum) |
| collection.set_cmap(cmap) |
| collection.set_norm(norm) |
| collection.set_alpha(alpha) |
| collection._internal_update(kwargs) |
| collection._scale_norm(norm, vmin, vmax) |
|
|
| corners = ((xmin, ymin), (xmax, ymax)) |
| self.update_datalim(corners) |
| self._request_autoscale_view(tight=True) |
|
|
| |
| self.add_collection(collection, autolim=False) |
| if not marginals: |
| return collection |
|
|
| |
| bars = [] |
| for zname, z, zmin, zmax, zscale, nbins in [ |
| ("x", x, xmin, xmax, xscale, nx), |
| ("y", y, ymin, ymax, yscale, 2 * ny), |
| ]: |
|
|
| if zscale == "log": |
| bin_edges = np.geomspace(zmin, zmax, nbins + 1) |
| else: |
| bin_edges = np.linspace(zmin, zmax, nbins + 1) |
|
|
| verts = np.empty((nbins, 4, 2)) |
| verts[:, 0, 0] = verts[:, 1, 0] = bin_edges[:-1] |
| verts[:, 2, 0] = verts[:, 3, 0] = bin_edges[1:] |
| verts[:, 0, 1] = verts[:, 3, 1] = .00 |
| verts[:, 1, 1] = verts[:, 2, 1] = .05 |
| if zname == "y": |
| verts = verts[:, :, ::-1] |
|
|
| |
| bin_idxs = np.searchsorted(bin_edges, z) - 1 |
| values = np.empty(nbins) |
| for i in range(nbins): |
| |
| |
| ci = C[bin_idxs == i] |
| values[i] = reduce_C_function(ci) if len(ci) > 0 else np.nan |
|
|
| mask = ~np.isnan(values) |
| verts = verts[mask] |
| values = values[mask] |
|
|
| trans = getattr(self, f"get_{zname}axis_transform")(which="grid") |
| bar = mcoll.PolyCollection( |
| verts, transform=trans, edgecolors="face") |
| bar.set_array(values) |
| bar.set_cmap(cmap) |
| bar.set_norm(norm) |
| bar.set_alpha(alpha) |
| bar._internal_update(kwargs) |
| bars.append(self.add_collection(bar, autolim=False)) |
|
|
| collection.hbar, collection.vbar = bars |
|
|
| def on_changed(collection): |
| collection.hbar.set_cmap(collection.get_cmap()) |
| collection.hbar.set_cmap(collection.get_cmap()) |
| collection.vbar.set_clim(collection.get_clim()) |
| collection.vbar.set_clim(collection.get_clim()) |
|
|
| collection.callbacks.connect('changed', on_changed) |
|
|
| return collection |
|
|
| @_docstring.dedent_interpd |
| def arrow(self, x, y, dx, dy, **kwargs): |
| """ |
| Add an arrow to the Axes. |
| |
| This draws an arrow from ``(x, y)`` to ``(x+dx, y+dy)``. |
| |
| Parameters |
| ---------- |
| %(FancyArrow)s |
| |
| Returns |
| ------- |
| `.FancyArrow` |
| The created `.FancyArrow` object. |
| |
| Notes |
| ----- |
| The resulting arrow is affected by the Axes aspect ratio and limits. |
| This may produce an arrow whose head is not square with its stem. To |
| create an arrow whose head is square with its stem, |
| use :meth:`annotate` for example: |
| |
| >>> ax.annotate("", xy=(0.5, 0.5), xytext=(0, 0), |
| ... arrowprops=dict(arrowstyle="->")) |
| |
| """ |
| |
| |
| x = self.convert_xunits(x) |
| y = self.convert_yunits(y) |
| dx = self.convert_xunits(dx) |
| dy = self.convert_yunits(dy) |
|
|
| a = mpatches.FancyArrow(x, y, dx, dy, **kwargs) |
| self.add_patch(a) |
| self._request_autoscale_view() |
| return a |
|
|
| @_docstring.copy(mquiver.QuiverKey.__init__) |
| def quiverkey(self, Q, X, Y, U, label, **kwargs): |
| qk = mquiver.QuiverKey(Q, X, Y, U, label, **kwargs) |
| self.add_artist(qk) |
| return qk |
|
|
| |
| def _quiver_units(self, args, kwargs): |
| if len(args) > 3: |
| x, y = args[0:2] |
| x, y = self._process_unit_info([("x", x), ("y", y)], kwargs) |
| return (x, y) + args[2:] |
| return args |
|
|
| |
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def quiver(self, *args, **kwargs): |
| """%(quiver_doc)s""" |
| |
| args = self._quiver_units(args, kwargs) |
| q = mquiver.Quiver(self, *args, **kwargs) |
| self.add_collection(q, autolim=True) |
| self._request_autoscale_view() |
| return q |
|
|
| |
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def barbs(self, *args, **kwargs): |
| """%(barbs_doc)s""" |
| |
| args = self._quiver_units(args, kwargs) |
| b = mquiver.Barbs(self, *args, **kwargs) |
| self.add_collection(b, autolim=True) |
| self._request_autoscale_view() |
| return b |
|
|
| |
| |
| def fill(self, *args, data=None, **kwargs): |
| """ |
| Plot filled polygons. |
| |
| Parameters |
| ---------- |
| *args : sequence of x, y, [color] |
| Each polygon is defined by the lists of *x* and *y* positions of |
| its nodes, optionally followed by a *color* specifier. See |
| :mod:`matplotlib.colors` for supported color specifiers. The |
| standard color cycle is used for polygons without a color |
| specifier. |
| |
| You can plot multiple polygons by providing multiple *x*, *y*, |
| *[color]* groups. |
| |
| For example, each of the following is legal:: |
| |
| ax.fill(x, y) # a polygon with default color |
| ax.fill(x, y, "b") # a blue polygon |
| ax.fill(x, y, x2, y2) # two polygons |
| ax.fill(x, y, "b", x2, y2, "r") # a blue and a red polygon |
| |
| data : indexable object, optional |
| An object with labelled data. If given, provide the label names to |
| plot in *x* and *y*, e.g.:: |
| |
| ax.fill("time", "signal", |
| data={"time": [0, 1, 2], "signal": [0, 1, 0]}) |
| |
| Returns |
| ------- |
| list of `~matplotlib.patches.Polygon` |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.patches.Polygon` properties |
| |
| Notes |
| ----- |
| Use :meth:`fill_between` if you would like to fill the region between |
| two curves. |
| """ |
| |
| kwargs = cbook.normalize_kwargs(kwargs, mlines.Line2D) |
| |
| patches = [*self._get_patches_for_fill(self, *args, data=data, **kwargs)] |
| for poly in patches: |
| self.add_patch(poly) |
| self._request_autoscale_view() |
| return patches |
|
|
| def _fill_between_x_or_y( |
| self, ind_dir, ind, dep1, dep2=0, *, |
| where=None, interpolate=False, step=None, **kwargs): |
| |
| |
| |
| |
| """ |
| Fill the area between two {dir} curves. |
| |
| The curves are defined by the points (*{ind}*, *{dep}1*) and (*{ind}*, |
| *{dep}2*). This creates one or multiple polygons describing the filled |
| area. |
| |
| You may exclude some {dir} sections from filling using *where*. |
| |
| By default, the edges connect the given points directly. Use *step* |
| if the filling should be a step function, i.e. constant in between |
| *{ind}*. |
| |
| Parameters |
| ---------- |
| {ind} : array (length N) |
| The {ind} coordinates of the nodes defining the curves. |
| |
| {dep}1 : array (length N) or scalar |
| The {dep} coordinates of the nodes defining the first curve. |
| |
| {dep}2 : array (length N) or scalar, default: 0 |
| The {dep} coordinates of the nodes defining the second curve. |
| |
| where : array of bool (length N), optional |
| Define *where* to exclude some {dir} regions from being filled. |
| The filled regions are defined by the coordinates ``{ind}[where]``. |
| More precisely, fill between ``{ind}[i]`` and ``{ind}[i+1]`` if |
| ``where[i] and where[i+1]``. Note that this definition implies |
| that an isolated *True* value between two *False* values in *where* |
| will not result in filling. Both sides of the *True* position |
| remain unfilled due to the adjacent *False* values. |
| |
| interpolate : bool, default: False |
| This option is only relevant if *where* is used and the two curves |
| are crossing each other. |
| |
| Semantically, *where* is often used for *{dep}1* > *{dep}2* or |
| similar. By default, the nodes of the polygon defining the filled |
| region will only be placed at the positions in the *{ind}* array. |
| Such a polygon cannot describe the above semantics close to the |
| intersection. The {ind}-sections containing the intersection are |
| simply clipped. |
| |
| Setting *interpolate* to *True* will calculate the actual |
| intersection point and extend the filled region up to this point. |
| |
| step : {{'pre', 'post', 'mid'}}, optional |
| Define *step* if the filling should be a step function, |
| i.e. constant in between *{ind}*. The value determines where the |
| step will occur: |
| |
| - 'pre': The y value is continued constantly to the left from |
| every *x* position, i.e. the interval ``(x[i-1], x[i]]`` has the |
| value ``y[i]``. |
| - 'post': The y value is continued constantly to the right from |
| every *x* position, i.e. the interval ``[x[i], x[i+1])`` has the |
| value ``y[i]``. |
| - 'mid': Steps occur half-way between the *x* positions. |
| |
| Returns |
| ------- |
| `.PolyCollection` |
| A `.PolyCollection` containing the plotted polygons. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| All other keyword arguments are passed on to `.PolyCollection`. |
| They control the `.Polygon` properties: |
| |
| %(PolyCollection:kwdoc)s |
| |
| See Also |
| -------- |
| fill_between : Fill between two sets of y-values. |
| fill_betweenx : Fill between two sets of x-values. |
| """ |
|
|
| dep_dir = {"x": "y", "y": "x"}[ind_dir] |
|
|
| if not mpl.rcParams["_internal.classic_mode"]: |
| kwargs = cbook.normalize_kwargs(kwargs, mcoll.Collection) |
| if not any(c in kwargs for c in ("color", "facecolor")): |
| kwargs["facecolor"] = \ |
| self._get_patches_for_fill.get_next_color() |
|
|
| |
| ind, dep1, dep2 = map( |
| ma.masked_invalid, self._process_unit_info( |
| [(ind_dir, ind), (dep_dir, dep1), (dep_dir, dep2)], kwargs)) |
|
|
| for name, array in [ |
| (ind_dir, ind), (f"{dep_dir}1", dep1), (f"{dep_dir}2", dep2)]: |
| if array.ndim > 1: |
| raise ValueError(f"{name!r} is not 1-dimensional") |
|
|
| if where is None: |
| where = True |
| else: |
| where = np.asarray(where, dtype=bool) |
| if where.size != ind.size: |
| raise ValueError(f"where size ({where.size}) does not match " |
| f"{ind_dir} size ({ind.size})") |
| where = where & ~functools.reduce( |
| np.logical_or, map(np.ma.getmaskarray, [ind, dep1, dep2])) |
|
|
| ind, dep1, dep2 = np.broadcast_arrays( |
| np.atleast_1d(ind), dep1, dep2, subok=True) |
|
|
| polys = [] |
| for idx0, idx1 in cbook.contiguous_regions(where): |
| indslice = ind[idx0:idx1] |
| dep1slice = dep1[idx0:idx1] |
| dep2slice = dep2[idx0:idx1] |
| if step is not None: |
| step_func = cbook.STEP_LOOKUP_MAP["steps-" + step] |
| indslice, dep1slice, dep2slice = \ |
| step_func(indslice, dep1slice, dep2slice) |
|
|
| if not len(indslice): |
| continue |
|
|
| N = len(indslice) |
| pts = np.zeros((2 * N + 2, 2)) |
|
|
| if interpolate: |
| def get_interp_point(idx): |
| im1 = max(idx - 1, 0) |
| ind_values = ind[im1:idx+1] |
| diff_values = dep1[im1:idx+1] - dep2[im1:idx+1] |
| dep1_values = dep1[im1:idx+1] |
|
|
| if len(diff_values) == 2: |
| if np.ma.is_masked(diff_values[1]): |
| return ind[im1], dep1[im1] |
| elif np.ma.is_masked(diff_values[0]): |
| return ind[idx], dep1[idx] |
|
|
| diff_order = diff_values.argsort() |
| diff_root_ind = np.interp( |
| 0, diff_values[diff_order], ind_values[diff_order]) |
| ind_order = ind_values.argsort() |
| diff_root_dep = np.interp( |
| diff_root_ind, |
| ind_values[ind_order], dep1_values[ind_order]) |
| return diff_root_ind, diff_root_dep |
|
|
| start = get_interp_point(idx0) |
| end = get_interp_point(idx1) |
| else: |
| |
| |
| start = indslice[0], dep2slice[0] |
| end = indslice[-1], dep2slice[-1] |
|
|
| pts[0] = start |
| pts[N + 1] = end |
|
|
| pts[1:N+1, 0] = indslice |
| pts[1:N+1, 1] = dep1slice |
| pts[N+2:, 0] = indslice[::-1] |
| pts[N+2:, 1] = dep2slice[::-1] |
|
|
| if ind_dir == "y": |
| pts = pts[:, ::-1] |
|
|
| polys.append(pts) |
|
|
| collection = mcoll.PolyCollection(polys, **kwargs) |
|
|
| |
| pts = np.row_stack([np.column_stack([ind[where], dep1[where]]), |
| np.column_stack([ind[where], dep2[where]])]) |
| if ind_dir == "y": |
| pts = pts[:, ::-1] |
|
|
| up_x = up_y = True |
| if "transform" in kwargs: |
| up_x, up_y = kwargs["transform"].contains_branch_seperately(self.transData) |
| self.update_datalim(pts, updatex=up_x, updatey=up_y) |
|
|
| self.add_collection(collection, autolim=False) |
| self._request_autoscale_view() |
| return collection |
|
|
| def fill_between(self, x, y1, y2=0, where=None, interpolate=False, |
| step=None, **kwargs): |
| return self._fill_between_x_or_y( |
| "x", x, y1, y2, |
| where=where, interpolate=interpolate, step=step, **kwargs) |
|
|
| if _fill_between_x_or_y.__doc__: |
| fill_between.__doc__ = _fill_between_x_or_y.__doc__.format( |
| dir="horizontal", ind="x", dep="y" |
| ) |
| fill_between = _preprocess_data( |
| _docstring.dedent_interpd(fill_between), |
| replace_names=["x", "y1", "y2", "where"]) |
|
|
| def fill_betweenx(self, y, x1, x2=0, where=None, |
| step=None, interpolate=False, **kwargs): |
| return self._fill_between_x_or_y( |
| "y", y, x1, x2, |
| where=where, interpolate=interpolate, step=step, **kwargs) |
|
|
| if _fill_between_x_or_y.__doc__: |
| fill_betweenx.__doc__ = _fill_between_x_or_y.__doc__.format( |
| dir="vertical", ind="y", dep="x" |
| ) |
| fill_betweenx = _preprocess_data( |
| _docstring.dedent_interpd(fill_betweenx), |
| replace_names=["y", "x1", "x2", "where"]) |
|
|
| |
|
|
| @_preprocess_data() |
| @_docstring.interpd |
| def imshow(self, X, cmap=None, norm=None, *, aspect=None, |
| interpolation=None, alpha=None, |
| vmin=None, vmax=None, origin=None, extent=None, |
| interpolation_stage=None, filternorm=True, filterrad=4.0, |
| resample=None, url=None, **kwargs): |
| """ |
| Display data as an image, i.e., on a 2D regular raster. |
| |
| The input may either be actual RGB(A) data, or 2D scalar data, which |
| will be rendered as a pseudocolor image. For displaying a grayscale |
| image, set up the colormapping using the parameters |
| ``cmap='gray', vmin=0, vmax=255``. |
| |
| The number of pixels used to render an image is set by the Axes size |
| and the figure *dpi*. This can lead to aliasing artifacts when |
| the image is resampled, because the displayed image size will usually |
| not match the size of *X* (see |
| :doc:`/gallery/images_contours_and_fields/image_antialiasing`). |
| The resampling can be controlled via the *interpolation* parameter |
| and/or :rc:`image.interpolation`. |
| |
| Parameters |
| ---------- |
| X : array-like or PIL image |
| The image data. Supported array shapes are: |
| |
| - (M, N): an image with scalar data. The values are mapped to |
| colors using normalization and a colormap. See parameters *norm*, |
| *cmap*, *vmin*, *vmax*. |
| - (M, N, 3): an image with RGB values (0-1 float or 0-255 int). |
| - (M, N, 4): an image with RGBA values (0-1 float or 0-255 int), |
| i.e. including transparency. |
| |
| The first two dimensions (M, N) define the rows and columns of |
| the image. |
| |
| Out-of-range RGB(A) values are clipped. |
| |
| %(cmap_doc)s |
| |
| This parameter is ignored if *X* is RGB(A). |
| |
| %(norm_doc)s |
| |
| This parameter is ignored if *X* is RGB(A). |
| |
| %(vmin_vmax_doc)s |
| |
| This parameter is ignored if *X* is RGB(A). |
| |
| aspect : {'equal', 'auto'} or float or None, default: None |
| The aspect ratio of the Axes. This parameter is particularly |
| relevant for images since it determines whether data pixels are |
| square. |
| |
| This parameter is a shortcut for explicitly calling |
| `.Axes.set_aspect`. See there for further details. |
| |
| - 'equal': Ensures an aspect ratio of 1. Pixels will be square |
| (unless pixel sizes are explicitly made non-square in data |
| coordinates using *extent*). |
| - 'auto': The Axes is kept fixed and the aspect is adjusted so |
| that the data fit in the Axes. In general, this will result in |
| non-square pixels. |
| |
| Normally, None (the default) means to use :rc:`image.aspect`. However, if |
| the image uses a transform that does not contain the axes data transform, |
| then None means to not modify the axes aspect at all (in that case, directly |
| call `.Axes.set_aspect` if desired). |
| |
| interpolation : str, default: :rc:`image.interpolation` |
| The interpolation method used. |
| |
| Supported values are 'none', 'antialiased', 'nearest', 'bilinear', |
| 'bicubic', 'spline16', 'spline36', 'hanning', 'hamming', 'hermite', |
| 'kaiser', 'quadric', 'catrom', 'gaussian', 'bessel', 'mitchell', |
| 'sinc', 'lanczos', 'blackman'. |
| |
| The data *X* is resampled to the pixel size of the image on the |
| figure canvas, using the interpolation method to either up- or |
| downsample the data. |
| |
| If *interpolation* is 'none', then for the ps, pdf, and svg |
| backends no down- or upsampling occurs, and the image data is |
| passed to the backend as a native image. Note that different ps, |
| pdf, and svg viewers may display these raw pixels differently. On |
| other backends, 'none' is the same as 'nearest'. |
| |
| If *interpolation* is the default 'antialiased', then 'nearest' |
| interpolation is used if the image is upsampled by more than a |
| factor of three (i.e. the number of display pixels is at least |
| three times the size of the data array). If the upsampling rate is |
| smaller than 3, or the image is downsampled, then 'hanning' |
| interpolation is used to act as an anti-aliasing filter, unless the |
| image happens to be upsampled by exactly a factor of two or one. |
| |
| See |
| :doc:`/gallery/images_contours_and_fields/interpolation_methods` |
| for an overview of the supported interpolation methods, and |
| :doc:`/gallery/images_contours_and_fields/image_antialiasing` for |
| a discussion of image antialiasing. |
| |
| Some interpolation methods require an additional radius parameter, |
| which can be set by *filterrad*. Additionally, the antigrain image |
| resize filter is controlled by the parameter *filternorm*. |
| |
| interpolation_stage : {'data', 'rgba'}, default: 'data' |
| If 'data', interpolation |
| is carried out on the data provided by the user. If 'rgba', the |
| interpolation is carried out after the colormapping has been |
| applied (visual interpolation). |
| |
| alpha : float or array-like, optional |
| The alpha blending value, between 0 (transparent) and 1 (opaque). |
| If *alpha* is an array, the alpha blending values are applied pixel |
| by pixel, and *alpha* must have the same shape as *X*. |
| |
| origin : {'upper', 'lower'}, default: :rc:`image.origin` |
| Place the [0, 0] index of the array in the upper left or lower |
| left corner of the Axes. The convention (the default) 'upper' is |
| typically used for matrices and images. |
| |
| Note that the vertical axis points upward for 'lower' |
| but downward for 'upper'. |
| |
| See the :ref:`imshow_extent` tutorial for |
| examples and a more detailed description. |
| |
| extent : floats (left, right, bottom, top), optional |
| The bounding box in data coordinates that the image will fill. |
| These values may be unitful and match the units of the Axes. |
| The image is stretched individually along x and y to fill the box. |
| |
| The default extent is determined by the following conditions. |
| Pixels have unit size in data coordinates. Their centers are on |
| integer coordinates, and their center coordinates range from 0 to |
| columns-1 horizontally and from 0 to rows-1 vertically. |
| |
| Note that the direction of the vertical axis and thus the default |
| values for top and bottom depend on *origin*: |
| |
| - For ``origin == 'upper'`` the default is |
| ``(-0.5, numcols-0.5, numrows-0.5, -0.5)``. |
| - For ``origin == 'lower'`` the default is |
| ``(-0.5, numcols-0.5, -0.5, numrows-0.5)``. |
| |
| See the :ref:`imshow_extent` tutorial for |
| examples and a more detailed description. |
| |
| filternorm : bool, default: True |
| A parameter for the antigrain image resize filter (see the |
| antigrain documentation). If *filternorm* is set, the filter |
| normalizes integer values and corrects the rounding errors. It |
| doesn't do anything with the source floating point values, it |
| corrects only integers according to the rule of 1.0 which means |
| that any sum of pixel weights must be equal to 1.0. So, the |
| filter function must produce a graph of the proper shape. |
| |
| filterrad : float > 0, default: 4.0 |
| The filter radius for filters that have a radius parameter, i.e. |
| when interpolation is one of: 'sinc', 'lanczos' or 'blackman'. |
| |
| resample : bool, default: :rc:`image.resample` |
| When *True*, use a full resampling method. When *False*, only |
| resample when the output image is larger than the input image. |
| |
| url : str, optional |
| Set the url of the created `.AxesImage`. See `.Artist.set_url`. |
| |
| Returns |
| ------- |
| `~matplotlib.image.AxesImage` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs : `~matplotlib.artist.Artist` properties |
| These parameters are passed on to the constructor of the |
| `.AxesImage` artist. |
| |
| See Also |
| -------- |
| matshow : Plot a matrix or an array as an image. |
| |
| Notes |
| ----- |
| Unless *extent* is used, pixel centers will be located at integer |
| coordinates. In other words: the origin will coincide with the center |
| of pixel (0, 0). |
| |
| There are two common representations for RGB images with an alpha |
| channel: |
| |
| - Straight (unassociated) alpha: R, G, and B channels represent the |
| color of the pixel, disregarding its opacity. |
| - Premultiplied (associated) alpha: R, G, and B channels represent |
| the color of the pixel, adjusted for its opacity by multiplication. |
| |
| `~matplotlib.pyplot.imshow` expects RGB images adopting the straight |
| (unassociated) alpha representation. |
| """ |
| im = mimage.AxesImage(self, cmap=cmap, norm=norm, |
| interpolation=interpolation, origin=origin, |
| extent=extent, filternorm=filternorm, |
| filterrad=filterrad, resample=resample, |
| interpolation_stage=interpolation_stage, |
| **kwargs) |
|
|
| if aspect is None and not ( |
| im.is_transform_set() |
| and not im.get_transform().contains_branch(self.transData)): |
| aspect = mpl.rcParams['image.aspect'] |
| if aspect is not None: |
| self.set_aspect(aspect) |
|
|
| im.set_data(X) |
| im.set_alpha(alpha) |
| if im.get_clip_path() is None: |
| |
| im.set_clip_path(self.patch) |
| im._scale_norm(norm, vmin, vmax) |
| im.set_url(url) |
|
|
| |
| |
| im.set_extent(im.get_extent()) |
|
|
| self.add_image(im) |
| return im |
|
|
| def _pcolorargs(self, funcname, *args, shading='auto', **kwargs): |
| |
| |
| |
| |
| |
|
|
| _valid_shading = ['gouraud', 'nearest', 'flat', 'auto'] |
| try: |
| _api.check_in_list(_valid_shading, shading=shading) |
| except ValueError: |
| _api.warn_external(f"shading value '{shading}' not in list of " |
| f"valid values {_valid_shading}. Setting " |
| "shading='auto'.") |
| shading = 'auto' |
|
|
| if len(args) == 1: |
| C = np.asanyarray(args[0]) |
| nrows, ncols = C.shape[:2] |
| if shading in ['gouraud', 'nearest']: |
| X, Y = np.meshgrid(np.arange(ncols), np.arange(nrows)) |
| else: |
| X, Y = np.meshgrid(np.arange(ncols + 1), np.arange(nrows + 1)) |
| shading = 'flat' |
| C = cbook.safe_masked_invalid(C, copy=True) |
| return X, Y, C, shading |
|
|
| if len(args) == 3: |
| |
| C = np.asanyarray(args[2]) |
| |
| X, Y = args[:2] |
| X, Y = self._process_unit_info([("x", X), ("y", Y)], kwargs) |
| X, Y = [cbook.safe_masked_invalid(a, copy=True) for a in [X, Y]] |
|
|
| if funcname == 'pcolormesh': |
| if np.ma.is_masked(X) or np.ma.is_masked(Y): |
| raise ValueError( |
| 'x and y arguments to pcolormesh cannot have ' |
| 'non-finite values or be of type ' |
| 'numpy.ma.MaskedArray with masked values') |
| nrows, ncols = C.shape[:2] |
| else: |
| raise _api.nargs_error(funcname, takes="1 or 3", given=len(args)) |
|
|
| Nx = X.shape[-1] |
| Ny = Y.shape[0] |
| if X.ndim != 2 or X.shape[0] == 1: |
| x = X.reshape(1, Nx) |
| X = x.repeat(Ny, axis=0) |
| if Y.ndim != 2 or Y.shape[1] == 1: |
| y = Y.reshape(Ny, 1) |
| Y = y.repeat(Nx, axis=1) |
| if X.shape != Y.shape: |
| raise TypeError(f'Incompatible X, Y inputs to {funcname}; ' |
| f'see help({funcname})') |
|
|
| if shading == 'auto': |
| if ncols == Nx and nrows == Ny: |
| shading = 'nearest' |
| else: |
| shading = 'flat' |
|
|
| if shading == 'flat': |
| if (Nx, Ny) != (ncols + 1, nrows + 1): |
| raise TypeError(f"Dimensions of C {C.shape} should" |
| f" be one smaller than X({Nx}) and Y({Ny})" |
| f" while using shading='flat'" |
| f" see help({funcname})") |
| else: |
| if (Nx, Ny) != (ncols, nrows): |
| raise TypeError('Dimensions of C %s are incompatible with' |
| ' X (%d) and/or Y (%d); see help(%s)' % ( |
| C.shape, Nx, Ny, funcname)) |
| if shading == 'nearest': |
| |
| |
| |
| def _interp_grid(X): |
| |
| if np.shape(X)[1] > 1: |
| dX = np.diff(X, axis=1)/2. |
| if not (np.all(dX >= 0) or np.all(dX <= 0)): |
| _api.warn_external( |
| f"The input coordinates to {funcname} are " |
| "interpreted as cell centers, but are not " |
| "monotonically increasing or decreasing. " |
| "This may lead to incorrectly calculated cell " |
| "edges, in which case, please supply " |
| f"explicit cell edges to {funcname}.") |
|
|
| hstack = np.ma.hstack if np.ma.isMA(X) else np.hstack |
| X = hstack((X[:, [0]] - dX[:, [0]], |
| X[:, :-1] + dX, |
| X[:, [-1]] + dX[:, [-1]])) |
| else: |
| |
| |
| X = np.hstack((X, X)) |
| return X |
|
|
| if ncols == Nx: |
| X = _interp_grid(X) |
| Y = _interp_grid(Y) |
| if nrows == Ny: |
| X = _interp_grid(X.T).T |
| Y = _interp_grid(Y.T).T |
| shading = 'flat' |
|
|
| C = cbook.safe_masked_invalid(C, copy=True) |
| return X, Y, C, shading |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def pcolor(self, *args, shading=None, alpha=None, norm=None, cmap=None, |
| vmin=None, vmax=None, **kwargs): |
| r""" |
| Create a pseudocolor plot with a non-regular rectangular grid. |
| |
| Call signature:: |
| |
| pcolor([X, Y,] C, **kwargs) |
| |
| *X* and *Y* can be used to specify the corners of the quadrilaterals. |
| |
| .. hint:: |
| |
| ``pcolor()`` can be very slow for large arrays. In most |
| cases you should use the similar but much faster |
| `~.Axes.pcolormesh` instead. See |
| :ref:`Differences between pcolor() and pcolormesh() |
| <differences-pcolor-pcolormesh>` for a discussion of the |
| differences. |
| |
| Parameters |
| ---------- |
| C : 2D array-like |
| The color-mapped values. Color-mapping is controlled by *cmap*, |
| *norm*, *vmin*, and *vmax*. |
| |
| X, Y : array-like, optional |
| The coordinates of the corners of quadrilaterals of a pcolormesh:: |
| |
| (X[i+1, j], Y[i+1, j]) (X[i+1, j+1], Y[i+1, j+1]) |
| ●╶───╴● |
| │ │ |
| ●╶───╴● |
| (X[i, j], Y[i, j]) (X[i, j+1], Y[i, j+1]) |
| |
| Note that the column index corresponds to the x-coordinate, and |
| the row index corresponds to y. For details, see the |
| :ref:`Notes <axes-pcolormesh-grid-orientation>` section below. |
| |
| If ``shading='flat'`` the dimensions of *X* and *Y* should be one |
| greater than those of *C*, and the quadrilateral is colored due |
| to the value at ``C[i, j]``. If *X*, *Y* and *C* have equal |
| dimensions, a warning will be raised and the last row and column |
| of *C* will be ignored. |
| |
| If ``shading='nearest'``, the dimensions of *X* and *Y* should be |
| the same as those of *C* (if not, a ValueError will be raised). The |
| color ``C[i, j]`` will be centered on ``(X[i, j], Y[i, j])``. |
| |
| If *X* and/or *Y* are 1-D arrays or column vectors they will be |
| expanded as needed into the appropriate 2D arrays, making a |
| rectangular grid. |
| |
| shading : {'flat', 'nearest', 'auto'}, default: :rc:`pcolor.shading` |
| The fill style for the quadrilateral. Possible values: |
| |
| - 'flat': A solid color is used for each quad. The color of the |
| quad (i, j), (i+1, j), (i, j+1), (i+1, j+1) is given by |
| ``C[i, j]``. The dimensions of *X* and *Y* should be |
| one greater than those of *C*; if they are the same as *C*, |
| then a deprecation warning is raised, and the last row |
| and column of *C* are dropped. |
| - 'nearest': Each grid point will have a color centered on it, |
| extending halfway between the adjacent grid centers. The |
| dimensions of *X* and *Y* must be the same as *C*. |
| - 'auto': Choose 'flat' if dimensions of *X* and *Y* are one |
| larger than *C*. Choose 'nearest' if dimensions are the same. |
| |
| See :doc:`/gallery/images_contours_and_fields/pcolormesh_grids` |
| for more description. |
| |
| %(cmap_doc)s |
| |
| %(norm_doc)s |
| |
| %(vmin_vmax_doc)s |
| |
| edgecolors : {'none', None, 'face', color, color sequence}, optional |
| The color of the edges. Defaults to 'none'. Possible values: |
| |
| - 'none' or '': No edge. |
| - *None*: :rc:`patch.edgecolor` will be used. Note that currently |
| :rc:`patch.force_edgecolor` has to be True for this to work. |
| - 'face': Use the adjacent face color. |
| - A color or sequence of colors will set the edge color. |
| |
| The singular form *edgecolor* works as an alias. |
| |
| alpha : float, default: None |
| The alpha blending value of the face color, between 0 (transparent) |
| and 1 (opaque). Note: The edgecolor is currently not affected by |
| this. |
| |
| snap : bool, default: False |
| Whether to snap the mesh to pixel boundaries. |
| |
| Returns |
| ------- |
| `matplotlib.collections.PolyQuadMesh` |
| |
| Other Parameters |
| ---------------- |
| antialiaseds : bool, default: False |
| The default *antialiaseds* is False if the default |
| *edgecolors*\ ="none" is used. This eliminates artificial lines |
| at patch boundaries, and works regardless of the value of alpha. |
| If *edgecolors* is not "none", then the default *antialiaseds* |
| is taken from :rc:`patch.antialiased`. |
| Stroking the edges may be preferred if *alpha* is 1, but will |
| cause artifacts otherwise. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additionally, the following arguments are allowed. They are passed |
| along to the `~matplotlib.collections.PolyQuadMesh` constructor: |
| |
| %(PolyCollection:kwdoc)s |
| |
| See Also |
| -------- |
| pcolormesh : for an explanation of the differences between |
| pcolor and pcolormesh. |
| imshow : If *X* and *Y* are each equidistant, `~.Axes.imshow` can be a |
| faster alternative. |
| |
| Notes |
| ----- |
| **Masked arrays** |
| |
| *X*, *Y* and *C* may be masked arrays. If either ``C[i, j]``, or one |
| of the vertices surrounding ``C[i, j]`` (*X* or *Y* at |
| ``[i, j], [i+1, j], [i, j+1], [i+1, j+1]``) is masked, nothing is |
| plotted. |
| |
| .. _axes-pcolor-grid-orientation: |
| |
| **Grid orientation** |
| |
| The grid orientation follows the standard matrix convention: An array |
| *C* with shape (nrows, ncolumns) is plotted with the column number as |
| *X* and the row number as *Y*. |
| """ |
|
|
| if shading is None: |
| shading = mpl.rcParams['pcolor.shading'] |
| shading = shading.lower() |
| X, Y, C, shading = self._pcolorargs('pcolor', *args, shading=shading, |
| kwargs=kwargs) |
| linewidths = (0.25,) |
| if 'linewidth' in kwargs: |
| kwargs['linewidths'] = kwargs.pop('linewidth') |
| kwargs.setdefault('linewidths', linewidths) |
|
|
| if 'edgecolor' in kwargs: |
| kwargs['edgecolors'] = kwargs.pop('edgecolor') |
| ec = kwargs.setdefault('edgecolors', 'none') |
|
|
| |
| |
| |
| |
| if 'antialiaseds' in kwargs: |
| kwargs['antialiased'] = kwargs.pop('antialiaseds') |
| if 'antialiased' not in kwargs and cbook._str_lower_equal(ec, "none"): |
| kwargs['antialiased'] = False |
|
|
| kwargs.setdefault('snap', False) |
|
|
| if np.ma.isMaskedArray(X) or np.ma.isMaskedArray(Y): |
| stack = np.ma.stack |
| X = np.ma.asarray(X) |
| Y = np.ma.asarray(Y) |
| |
| x = X.compressed() |
| y = Y.compressed() |
| else: |
| stack = np.stack |
| x = X |
| y = Y |
| coords = stack([X, Y], axis=-1) |
|
|
| collection = mcoll.PolyQuadMesh( |
| coords, array=C, cmap=cmap, norm=norm, alpha=alpha, **kwargs) |
| collection._scale_norm(norm, vmin, vmax) |
|
|
| |
| t = collection._transform |
| if (not isinstance(t, mtransforms.Transform) and |
| hasattr(t, '_as_mpl_transform')): |
| t = t._as_mpl_transform(self.axes) |
|
|
| if t and any(t.contains_branch_seperately(self.transData)): |
| trans_to_data = t - self.transData |
| pts = np.vstack([x, y]).T.astype(float) |
| transformed_pts = trans_to_data.transform(pts) |
| x = transformed_pts[..., 0] |
| y = transformed_pts[..., 1] |
|
|
| self.add_collection(collection, autolim=False) |
|
|
| minx = np.min(x) |
| maxx = np.max(x) |
| miny = np.min(y) |
| maxy = np.max(y) |
| collection.sticky_edges.x[:] = [minx, maxx] |
| collection.sticky_edges.y[:] = [miny, maxy] |
| corners = (minx, miny), (maxx, maxy) |
| self.update_datalim(corners) |
| self._request_autoscale_view() |
| return collection |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def pcolormesh(self, *args, alpha=None, norm=None, cmap=None, vmin=None, |
| vmax=None, shading=None, antialiased=False, **kwargs): |
| """ |
| Create a pseudocolor plot with a non-regular rectangular grid. |
| |
| Call signature:: |
| |
| pcolormesh([X, Y,] C, **kwargs) |
| |
| *X* and *Y* can be used to specify the corners of the quadrilaterals. |
| |
| .. hint:: |
| |
| `~.Axes.pcolormesh` is similar to `~.Axes.pcolor`. It is much faster |
| and preferred in most cases. For a detailed discussion on the |
| differences see :ref:`Differences between pcolor() and pcolormesh() |
| <differences-pcolor-pcolormesh>`. |
| |
| Parameters |
| ---------- |
| C : array-like |
| The mesh data. Supported array shapes are: |
| |
| - (M, N) or M*N: a mesh with scalar data. The values are mapped to |
| colors using normalization and a colormap. See parameters *norm*, |
| *cmap*, *vmin*, *vmax*. |
| - (M, N, 3): an image with RGB values (0-1 float or 0-255 int). |
| - (M, N, 4): an image with RGBA values (0-1 float or 0-255 int), |
| i.e. including transparency. |
| |
| The first two dimensions (M, N) define the rows and columns of |
| the mesh data. |
| |
| X, Y : array-like, optional |
| The coordinates of the corners of quadrilaterals of a pcolormesh:: |
| |
| (X[i+1, j], Y[i+1, j]) (X[i+1, j+1], Y[i+1, j+1]) |
| ●╶───╴● |
| │ │ |
| ●╶───╴● |
| (X[i, j], Y[i, j]) (X[i, j+1], Y[i, j+1]) |
| |
| Note that the column index corresponds to the x-coordinate, and |
| the row index corresponds to y. For details, see the |
| :ref:`Notes <axes-pcolormesh-grid-orientation>` section below. |
| |
| If ``shading='flat'`` the dimensions of *X* and *Y* should be one |
| greater than those of *C*, and the quadrilateral is colored due |
| to the value at ``C[i, j]``. If *X*, *Y* and *C* have equal |
| dimensions, a warning will be raised and the last row and column |
| of *C* will be ignored. |
| |
| If ``shading='nearest'`` or ``'gouraud'``, the dimensions of *X* |
| and *Y* should be the same as those of *C* (if not, a ValueError |
| will be raised). For ``'nearest'`` the color ``C[i, j]`` is |
| centered on ``(X[i, j], Y[i, j])``. For ``'gouraud'``, a smooth |
| interpolation is caried out between the quadrilateral corners. |
| |
| If *X* and/or *Y* are 1-D arrays or column vectors they will be |
| expanded as needed into the appropriate 2D arrays, making a |
| rectangular grid. |
| |
| %(cmap_doc)s |
| |
| %(norm_doc)s |
| |
| %(vmin_vmax_doc)s |
| |
| edgecolors : {'none', None, 'face', color, color sequence}, optional |
| The color of the edges. Defaults to 'none'. Possible values: |
| |
| - 'none' or '': No edge. |
| - *None*: :rc:`patch.edgecolor` will be used. Note that currently |
| :rc:`patch.force_edgecolor` has to be True for this to work. |
| - 'face': Use the adjacent face color. |
| - A color or sequence of colors will set the edge color. |
| |
| The singular form *edgecolor* works as an alias. |
| |
| alpha : float, default: None |
| The alpha blending value, between 0 (transparent) and 1 (opaque). |
| |
| shading : {'flat', 'nearest', 'gouraud', 'auto'}, optional |
| The fill style for the quadrilateral; defaults to |
| :rc:`pcolor.shading`. Possible values: |
| |
| - 'flat': A solid color is used for each quad. The color of the |
| quad (i, j), (i+1, j), (i, j+1), (i+1, j+1) is given by |
| ``C[i, j]``. The dimensions of *X* and *Y* should be |
| one greater than those of *C*; if they are the same as *C*, |
| then a deprecation warning is raised, and the last row |
| and column of *C* are dropped. |
| - 'nearest': Each grid point will have a color centered on it, |
| extending halfway between the adjacent grid centers. The |
| dimensions of *X* and *Y* must be the same as *C*. |
| - 'gouraud': Each quad will be Gouraud shaded: The color of the |
| corners (i', j') are given by ``C[i', j']``. The color values of |
| the area in between is interpolated from the corner values. |
| The dimensions of *X* and *Y* must be the same as *C*. When |
| Gouraud shading is used, *edgecolors* is ignored. |
| - 'auto': Choose 'flat' if dimensions of *X* and *Y* are one |
| larger than *C*. Choose 'nearest' if dimensions are the same. |
| |
| See :doc:`/gallery/images_contours_and_fields/pcolormesh_grids` |
| for more description. |
| |
| snap : bool, default: False |
| Whether to snap the mesh to pixel boundaries. |
| |
| rasterized : bool, optional |
| Rasterize the pcolormesh when drawing vector graphics. This can |
| speed up rendering and produce smaller files for large data sets. |
| See also :doc:`/gallery/misc/rasterization_demo`. |
| |
| Returns |
| ------- |
| `matplotlib.collections.QuadMesh` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additionally, the following arguments are allowed. They are passed |
| along to the `~matplotlib.collections.QuadMesh` constructor: |
| |
| %(QuadMesh:kwdoc)s |
| |
| See Also |
| -------- |
| pcolor : An alternative implementation with slightly different |
| features. For a detailed discussion on the differences see |
| :ref:`Differences between pcolor() and pcolormesh() |
| <differences-pcolor-pcolormesh>`. |
| imshow : If *X* and *Y* are each equidistant, `~.Axes.imshow` can be a |
| faster alternative. |
| |
| Notes |
| ----- |
| **Masked arrays** |
| |
| *C* may be a masked array. If ``C[i, j]`` is masked, the corresponding |
| quadrilateral will be transparent. Masking of *X* and *Y* is not |
| supported. Use `~.Axes.pcolor` if you need this functionality. |
| |
| .. _axes-pcolormesh-grid-orientation: |
| |
| **Grid orientation** |
| |
| The grid orientation follows the standard matrix convention: An array |
| *C* with shape (nrows, ncolumns) is plotted with the column number as |
| *X* and the row number as *Y*. |
| |
| .. _differences-pcolor-pcolormesh: |
| |
| **Differences between pcolor() and pcolormesh()** |
| |
| Both methods are used to create a pseudocolor plot of a 2D array |
| using quadrilaterals. |
| |
| The main difference lies in the created object and internal data |
| handling: |
| While `~.Axes.pcolor` returns a `.PolyQuadMesh`, `~.Axes.pcolormesh` |
| returns a `.QuadMesh`. The latter is more specialized for the given |
| purpose and thus is faster. It should almost always be preferred. |
| |
| There is also a slight difference in the handling of masked arrays. |
| Both `~.Axes.pcolor` and `~.Axes.pcolormesh` support masked arrays |
| for *C*. However, only `~.Axes.pcolor` supports masked arrays for *X* |
| and *Y*. The reason lies in the internal handling of the masked values. |
| `~.Axes.pcolor` leaves out the respective polygons from the |
| PolyQuadMesh. `~.Axes.pcolormesh` sets the facecolor of the masked |
| elements to transparent. You can see the difference when using |
| edgecolors. While all edges are drawn irrespective of masking in a |
| QuadMesh, the edge between two adjacent masked quadrilaterals in |
| `~.Axes.pcolor` is not drawn as the corresponding polygons do not |
| exist in the PolyQuadMesh. Because PolyQuadMesh draws each individual |
| polygon, it also supports applying hatches and linestyles to the collection. |
| |
| Another difference is the support of Gouraud shading in |
| `~.Axes.pcolormesh`, which is not available with `~.Axes.pcolor`. |
| |
| """ |
| if shading is None: |
| shading = mpl.rcParams['pcolor.shading'] |
| shading = shading.lower() |
| kwargs.setdefault('edgecolors', 'none') |
|
|
| X, Y, C, shading = self._pcolorargs('pcolormesh', *args, |
| shading=shading, kwargs=kwargs) |
| coords = np.stack([X, Y], axis=-1) |
|
|
| kwargs.setdefault('snap', mpl.rcParams['pcolormesh.snap']) |
|
|
| collection = mcoll.QuadMesh( |
| coords, antialiased=antialiased, shading=shading, |
| array=C, cmap=cmap, norm=norm, alpha=alpha, **kwargs) |
| collection._scale_norm(norm, vmin, vmax) |
|
|
| coords = coords.reshape(-1, 2) |
|
|
| |
| t = collection._transform |
| if (not isinstance(t, mtransforms.Transform) and |
| hasattr(t, '_as_mpl_transform')): |
| t = t._as_mpl_transform(self.axes) |
|
|
| if t and any(t.contains_branch_seperately(self.transData)): |
| trans_to_data = t - self.transData |
| coords = trans_to_data.transform(coords) |
|
|
| self.add_collection(collection, autolim=False) |
|
|
| minx, miny = np.min(coords, axis=0) |
| maxx, maxy = np.max(coords, axis=0) |
| collection.sticky_edges.x[:] = [minx, maxx] |
| collection.sticky_edges.y[:] = [miny, maxy] |
| corners = (minx, miny), (maxx, maxy) |
| self.update_datalim(corners) |
| self._request_autoscale_view() |
| return collection |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def pcolorfast(self, *args, alpha=None, norm=None, cmap=None, vmin=None, |
| vmax=None, **kwargs): |
| """ |
| Create a pseudocolor plot with a non-regular rectangular grid. |
| |
| Call signature:: |
| |
| ax.pcolorfast([X, Y], C, /, **kwargs) |
| |
| This method is similar to `~.Axes.pcolor` and `~.Axes.pcolormesh`. |
| It's designed to provide the fastest pcolor-type plotting with the |
| Agg backend. To achieve this, it uses different algorithms internally |
| depending on the complexity of the input grid (regular rectangular, |
| non-regular rectangular or arbitrary quadrilateral). |
| |
| .. warning:: |
| |
| This method is experimental. Compared to `~.Axes.pcolor` or |
| `~.Axes.pcolormesh` it has some limitations: |
| |
| - It supports only flat shading (no outlines) |
| - It lacks support for log scaling of the axes. |
| - It does not have a pyplot wrapper. |
| |
| Parameters |
| ---------- |
| C : array-like |
| The image data. Supported array shapes are: |
| |
| - (M, N): an image with scalar data. Color-mapping is controlled |
| by *cmap*, *norm*, *vmin*, and *vmax*. |
| - (M, N, 3): an image with RGB values (0-1 float or 0-255 int). |
| - (M, N, 4): an image with RGBA values (0-1 float or 0-255 int), |
| i.e. including transparency. |
| |
| The first two dimensions (M, N) define the rows and columns of |
| the image. |
| |
| This parameter can only be passed positionally. |
| |
| X, Y : tuple or array-like, default: ``(0, N)``, ``(0, M)`` |
| *X* and *Y* are used to specify the coordinates of the |
| quadrilaterals. There are different ways to do this: |
| |
| - Use tuples ``X=(xmin, xmax)`` and ``Y=(ymin, ymax)`` to define |
| a *uniform rectangular grid*. |
| |
| The tuples define the outer edges of the grid. All individual |
| quadrilaterals will be of the same size. This is the fastest |
| version. |
| |
| - Use 1D arrays *X*, *Y* to specify a *non-uniform rectangular |
| grid*. |
| |
| In this case *X* and *Y* have to be monotonic 1D arrays of length |
| *N+1* and *M+1*, specifying the x and y boundaries of the cells. |
| |
| The speed is intermediate. Note: The grid is checked, and if |
| found to be uniform the fast version is used. |
| |
| - Use 2D arrays *X*, *Y* if you need an *arbitrary quadrilateral |
| grid* (i.e. if the quadrilaterals are not rectangular). |
| |
| In this case *X* and *Y* are 2D arrays with shape (M + 1, N + 1), |
| specifying the x and y coordinates of the corners of the colored |
| quadrilaterals. |
| |
| This is the most general, but the slowest to render. It may |
| produce faster and more compact output using ps, pdf, and |
| svg backends, however. |
| |
| These arguments can only be passed positionally. |
| |
| %(cmap_doc)s |
| |
| This parameter is ignored if *C* is RGB(A). |
| |
| %(norm_doc)s |
| |
| This parameter is ignored if *C* is RGB(A). |
| |
| %(vmin_vmax_doc)s |
| |
| This parameter is ignored if *C* is RGB(A). |
| |
| alpha : float, default: None |
| The alpha blending value, between 0 (transparent) and 1 (opaque). |
| |
| snap : bool, default: False |
| Whether to snap the mesh to pixel boundaries. |
| |
| Returns |
| ------- |
| `.AxesImage` or `.PcolorImage` or `.QuadMesh` |
| The return type depends on the type of grid: |
| |
| - `.AxesImage` for a regular rectangular grid. |
| - `.PcolorImage` for a non-regular rectangular grid. |
| - `.QuadMesh` for a non-rectangular grid. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Supported additional parameters depend on the type of grid. |
| See return types of *image* for further description. |
| """ |
|
|
| C = args[-1] |
| nr, nc = np.shape(C)[:2] |
| if len(args) == 1: |
| style = "image" |
| x = [0, nc] |
| y = [0, nr] |
| elif len(args) == 3: |
| x, y = args[:2] |
| x = np.asarray(x) |
| y = np.asarray(y) |
| if x.ndim == 1 and y.ndim == 1: |
| if x.size == 2 and y.size == 2: |
| style = "image" |
| else: |
| dx = np.diff(x) |
| dy = np.diff(y) |
| if (np.ptp(dx) < 0.01 * abs(dx.mean()) and |
| np.ptp(dy) < 0.01 * abs(dy.mean())): |
| style = "image" |
| else: |
| style = "pcolorimage" |
| elif x.ndim == 2 and y.ndim == 2: |
| style = "quadmesh" |
| else: |
| raise TypeError("arguments do not match valid signatures") |
| else: |
| raise _api.nargs_error('pcolorfast', '1 or 3', len(args)) |
|
|
| if style == "quadmesh": |
| |
| coords = np.stack([x, y], axis=-1) |
| if np.ndim(C) not in {2, 3}: |
| raise ValueError("C must be 2D or 3D") |
| collection = mcoll.QuadMesh( |
| coords, array=C, |
| alpha=alpha, cmap=cmap, norm=norm, |
| antialiased=False, edgecolors="none") |
| self.add_collection(collection, autolim=False) |
| xl, xr, yb, yt = x.min(), x.max(), y.min(), y.max() |
| ret = collection |
|
|
| else: |
| extent = xl, xr, yb, yt = x[0], x[-1], y[0], y[-1] |
| if style == "image": |
| im = mimage.AxesImage( |
| self, cmap=cmap, norm=norm, |
| data=C, alpha=alpha, extent=extent, |
| interpolation='nearest', origin='lower', |
| **kwargs) |
| elif style == "pcolorimage": |
| im = mimage.PcolorImage( |
| self, x, y, C, |
| cmap=cmap, norm=norm, alpha=alpha, extent=extent, |
| **kwargs) |
| self.add_image(im) |
| ret = im |
|
|
| if np.ndim(C) == 2: |
| ret._scale_norm(norm, vmin, vmax) |
|
|
| if ret.get_clip_path() is None: |
| |
| ret.set_clip_path(self.patch) |
|
|
| ret.sticky_edges.x[:] = [xl, xr] |
| ret.sticky_edges.y[:] = [yb, yt] |
| self.update_datalim(np.array([[xl, yb], [xr, yt]])) |
| self._request_autoscale_view(tight=True) |
| return ret |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def contour(self, *args, **kwargs): |
| """ |
| Plot contour lines. |
| |
| Call signature:: |
| |
| contour([X, Y,] Z, [levels], **kwargs) |
| %(contour_doc)s |
| """ |
| kwargs['filled'] = False |
| contours = mcontour.QuadContourSet(self, *args, **kwargs) |
| self._request_autoscale_view() |
| return contours |
|
|
| @_preprocess_data() |
| @_docstring.dedent_interpd |
| def contourf(self, *args, **kwargs): |
| """ |
| Plot filled contours. |
| |
| Call signature:: |
| |
| contourf([X, Y,] Z, [levels], **kwargs) |
| %(contour_doc)s |
| """ |
| kwargs['filled'] = True |
| contours = mcontour.QuadContourSet(self, *args, **kwargs) |
| self._request_autoscale_view() |
| return contours |
|
|
| def clabel(self, CS, levels=None, **kwargs): |
| """ |
| Label a contour plot. |
| |
| Adds labels to line contours in given `.ContourSet`. |
| |
| Parameters |
| ---------- |
| CS : `.ContourSet` instance |
| Line contours to label. |
| |
| levels : array-like, optional |
| A list of level values, that should be labeled. The list must be |
| a subset of ``CS.levels``. If not given, all levels are labeled. |
| |
| **kwargs |
| All other parameters are documented in `~.ContourLabeler.clabel`. |
| """ |
| return CS.clabel(levels, **kwargs) |
|
|
| |
|
|
| @_preprocess_data(replace_names=["x", 'weights'], label_namer="x") |
| def hist(self, x, bins=None, range=None, density=False, weights=None, |
| cumulative=False, bottom=None, histtype='bar', align='mid', |
| orientation='vertical', rwidth=None, log=False, |
| color=None, label=None, stacked=False, **kwargs): |
| """ |
| Compute and plot a histogram. |
| |
| This method uses `numpy.histogram` to bin the data in *x* and count the |
| number of values in each bin, then draws the distribution either as a |
| `.BarContainer` or `.Polygon`. The *bins*, *range*, *density*, and |
| *weights* parameters are forwarded to `numpy.histogram`. |
| |
| If the data has already been binned and counted, use `~.bar` or |
| `~.stairs` to plot the distribution:: |
| |
| counts, bins = np.histogram(x) |
| plt.stairs(counts, bins) |
| |
| Alternatively, plot pre-computed bins and counts using ``hist()`` by |
| treating each bin as a single point with a weight equal to its count:: |
| |
| plt.hist(bins[:-1], bins, weights=counts) |
| |
| The data input *x* can be a singular array, a list of datasets of |
| potentially different lengths ([*x0*, *x1*, ...]), or a 2D ndarray in |
| which each column is a dataset. Note that the ndarray form is |
| transposed relative to the list form. If the input is an array, then |
| the return value is a tuple (*n*, *bins*, *patches*); if the input is a |
| sequence of arrays, then the return value is a tuple |
| ([*n0*, *n1*, ...], *bins*, [*patches0*, *patches1*, ...]). |
| |
| Masked arrays are not supported. |
| |
| Parameters |
| ---------- |
| x : (n,) array or sequence of (n,) arrays |
| Input values, this takes either a single array or a sequence of |
| arrays which are not required to be of the same length. |
| |
| bins : int or sequence or str, default: :rc:`hist.bins` |
| If *bins* is an integer, it defines the number of equal-width bins |
| in the range. |
| |
| If *bins* is a sequence, it defines the bin edges, including the |
| left edge of the first bin and the right edge of the last bin; |
| in this case, bins may be unequally spaced. All but the last |
| (righthand-most) bin is half-open. In other words, if *bins* is:: |
| |
| [1, 2, 3, 4] |
| |
| then the first bin is ``[1, 2)`` (including 1, but excluding 2) and |
| the second ``[2, 3)``. The last bin, however, is ``[3, 4]``, which |
| *includes* 4. |
| |
| If *bins* is a string, it is one of the binning strategies |
| supported by `numpy.histogram_bin_edges`: 'auto', 'fd', 'doane', |
| 'scott', 'stone', 'rice', 'sturges', or 'sqrt'. |
| |
| range : tuple or None, default: None |
| The lower and upper range of the bins. Lower and upper outliers |
| are ignored. If not provided, *range* is ``(x.min(), x.max())``. |
| Range has no effect if *bins* is a sequence. |
| |
| If *bins* is a sequence or *range* is specified, autoscaling |
| is based on the specified bin range instead of the |
| range of x. |
| |
| density : bool, default: False |
| If ``True``, draw and return a probability density: each bin |
| will display the bin's raw count divided by the total number of |
| counts *and the bin width* |
| (``density = counts / (sum(counts) * np.diff(bins))``), |
| so that the area under the histogram integrates to 1 |
| (``np.sum(density * np.diff(bins)) == 1``). |
| |
| If *stacked* is also ``True``, the sum of the histograms is |
| normalized to 1. |
| |
| weights : (n,) array-like or None, default: None |
| An array of weights, of the same shape as *x*. Each value in |
| *x* only contributes its associated weight towards the bin count |
| (instead of 1). If *density* is ``True``, the weights are |
| normalized, so that the integral of the density over the range |
| remains 1. |
| |
| cumulative : bool or -1, default: False |
| If ``True``, then a histogram is computed where each bin gives the |
| counts in that bin plus all bins for smaller values. The last bin |
| gives the total number of datapoints. |
| |
| If *density* is also ``True`` then the histogram is normalized such |
| that the last bin equals 1. |
| |
| If *cumulative* is a number less than 0 (e.g., -1), the direction |
| of accumulation is reversed. In this case, if *density* is also |
| ``True``, then the histogram is normalized such that the first bin |
| equals 1. |
| |
| bottom : array-like, scalar, or None, default: None |
| Location of the bottom of each bin, i.e. bins are drawn from |
| ``bottom`` to ``bottom + hist(x, bins)`` If a scalar, the bottom |
| of each bin is shifted by the same amount. If an array, each bin |
| is shifted independently and the length of bottom must match the |
| number of bins. If None, defaults to 0. |
| |
| histtype : {'bar', 'barstacked', 'step', 'stepfilled'}, default: 'bar' |
| The type of histogram to draw. |
| |
| - 'bar' is a traditional bar-type histogram. If multiple data |
| are given the bars are arranged side by side. |
| - 'barstacked' is a bar-type histogram where multiple |
| data are stacked on top of each other. |
| - 'step' generates a lineplot that is by default unfilled. |
| - 'stepfilled' generates a lineplot that is by default filled. |
| |
| align : {'left', 'mid', 'right'}, default: 'mid' |
| The horizontal alignment of the histogram bars. |
| |
| - 'left': bars are centered on the left bin edges. |
| - 'mid': bars are centered between the bin edges. |
| - 'right': bars are centered on the right bin edges. |
| |
| orientation : {'vertical', 'horizontal'}, default: 'vertical' |
| If 'horizontal', `~.Axes.barh` will be used for bar-type histograms |
| and the *bottom* kwarg will be the left edges. |
| |
| rwidth : float or None, default: None |
| The relative width of the bars as a fraction of the bin width. If |
| ``None``, automatically compute the width. |
| |
| Ignored if *histtype* is 'step' or 'stepfilled'. |
| |
| log : bool, default: False |
| If ``True``, the histogram axis will be set to a log scale. |
| |
| color : color or array-like of colors or None, default: None |
| Color or sequence of colors, one per dataset. Default (``None``) |
| uses the standard line color sequence. |
| |
| label : str or None, default: None |
| String, or sequence of strings to match multiple datasets. Bar |
| charts yield multiple patches per dataset, but only the first gets |
| the label, so that `~.Axes.legend` will work as expected. |
| |
| stacked : bool, default: False |
| If ``True``, multiple data are stacked on top of each other If |
| ``False`` multiple data are arranged side by side if histtype is |
| 'bar' or on top of each other if histtype is 'step' |
| |
| Returns |
| ------- |
| n : array or list of arrays |
| The values of the histogram bins. See *density* and *weights* for a |
| description of the possible semantics. If input *x* is an array, |
| then this is an array of length *nbins*. If input is a sequence of |
| arrays ``[data1, data2, ...]``, then this is a list of arrays with |
| the values of the histograms for each of the arrays in the same |
| order. The dtype of the array *n* (or of its element arrays) will |
| always be float even if no weighting or normalization is used. |
| |
| bins : array |
| The edges of the bins. Length nbins + 1 (nbins left edges and right |
| edge of last bin). Always a single array even when multiple data |
| sets are passed in. |
| |
| patches : `.BarContainer` or list of a single `.Polygon` or list of \ |
| such objects |
| Container of individual artists used to create the histogram |
| or list of such containers if there are multiple input datasets. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| `~matplotlib.patches.Patch` properties |
| |
| See Also |
| -------- |
| hist2d : 2D histogram with rectangular bins |
| hexbin : 2D histogram with hexagonal bins |
| stairs : Plot a pre-computed histogram |
| bar : Plot a pre-computed histogram |
| |
| Notes |
| ----- |
| For large numbers of bins (>1000), plotting can be significantly |
| accelerated by using `~.Axes.stairs` to plot a pre-computed histogram |
| (``plt.stairs(*np.histogram(data))``), or by setting *histtype* to |
| 'step' or 'stepfilled' rather than 'bar' or 'barstacked'. |
| """ |
| |
| bin_range = range |
| from builtins import range |
|
|
| if np.isscalar(x): |
| x = [x] |
|
|
| if bins is None: |
| bins = mpl.rcParams['hist.bins'] |
|
|
| |
| _api.check_in_list(['bar', 'barstacked', 'step', 'stepfilled'], |
| histtype=histtype) |
| _api.check_in_list(['left', 'mid', 'right'], align=align) |
| _api.check_in_list(['horizontal', 'vertical'], orientation=orientation) |
|
|
| if histtype == 'barstacked' and not stacked: |
| stacked = True |
|
|
| |
| x = cbook._reshape_2D(x, 'x') |
| nx = len(x) |
|
|
| |
| |
| |
| if orientation == "vertical": |
| convert_units = self.convert_xunits |
| x = [*self._process_unit_info([("x", x[0])], kwargs), |
| *map(convert_units, x[1:])] |
| else: |
| convert_units = self.convert_yunits |
| x = [*self._process_unit_info([("y", x[0])], kwargs), |
| *map(convert_units, x[1:])] |
|
|
| if bin_range is not None: |
| bin_range = convert_units(bin_range) |
|
|
| if not cbook.is_scalar_or_string(bins): |
| bins = convert_units(bins) |
|
|
| |
| if weights is not None: |
| w = cbook._reshape_2D(weights, 'weights') |
| else: |
| w = [None] * nx |
|
|
| if len(w) != nx: |
| raise ValueError('weights should have the same shape as x') |
|
|
| input_empty = True |
| for xi, wi in zip(x, w): |
| len_xi = len(xi) |
| if wi is not None and len(wi) != len_xi: |
| raise ValueError('weights should have the same shape as x') |
| if len_xi: |
| input_empty = False |
|
|
| if color is None: |
| colors = [self._get_lines.get_next_color() for i in range(nx)] |
| else: |
| colors = mcolors.to_rgba_array(color) |
| if len(colors) != nx: |
| raise ValueError(f"The 'color' keyword argument must have one " |
| f"color per dataset, but {nx} datasets and " |
| f"{len(colors)} colors were provided") |
|
|
| hist_kwargs = dict() |
|
|
| |
| |
| |
| if bin_range is None: |
| xmin = np.inf |
| xmax = -np.inf |
| for xi in x: |
| if len(xi): |
| |
| |
| xmin = min(xmin, np.nanmin(xi)) |
| xmax = max(xmax, np.nanmax(xi)) |
| if xmin <= xmax: |
| bin_range = (xmin, xmax) |
|
|
| |
| |
| |
| if not input_empty and len(x) > 1: |
| if weights is not None: |
| _w = np.concatenate(w) |
| else: |
| _w = None |
| bins = np.histogram_bin_edges( |
| np.concatenate(x), bins, bin_range, _w) |
| else: |
| hist_kwargs['range'] = bin_range |
|
|
| density = bool(density) |
| if density and not stacked: |
| hist_kwargs['density'] = density |
|
|
| |
| tops = [] |
| |
| for i in range(nx): |
| |
| |
| m, bins = np.histogram(x[i], bins, weights=w[i], **hist_kwargs) |
| tops.append(m) |
| tops = np.array(tops, float) |
| bins = np.array(bins, float) |
| if stacked: |
| tops = tops.cumsum(axis=0) |
| |
| |
| if density: |
| tops = (tops / np.diff(bins)) / tops[-1].sum() |
| if cumulative: |
| slc = slice(None) |
| if isinstance(cumulative, Number) and cumulative < 0: |
| slc = slice(None, None, -1) |
| if density: |
| tops = (tops * np.diff(bins))[:, slc].cumsum(axis=1)[:, slc] |
| else: |
| tops = tops[:, slc].cumsum(axis=1)[:, slc] |
|
|
| patches = [] |
|
|
| if histtype.startswith('bar'): |
|
|
| totwidth = np.diff(bins) |
|
|
| if rwidth is not None: |
| dr = np.clip(rwidth, 0, 1) |
| elif (len(tops) > 1 and |
| ((not stacked) or mpl.rcParams['_internal.classic_mode'])): |
| dr = 0.8 |
| else: |
| dr = 1.0 |
|
|
| if histtype == 'bar' and not stacked: |
| width = dr * totwidth / nx |
| dw = width |
| boffset = -0.5 * dr * totwidth * (1 - 1 / nx) |
| elif histtype == 'barstacked' or stacked: |
| width = dr * totwidth |
| boffset, dw = 0.0, 0.0 |
|
|
| if align == 'mid': |
| boffset += 0.5 * totwidth |
| elif align == 'right': |
| boffset += totwidth |
|
|
| if orientation == 'horizontal': |
| _barfunc = self.barh |
| bottom_kwarg = 'left' |
| else: |
| _barfunc = self.bar |
| bottom_kwarg = 'bottom' |
|
|
| for top, color in zip(tops, colors): |
| if bottom is None: |
| bottom = np.zeros(len(top)) |
| if stacked: |
| height = top - bottom |
| else: |
| height = top |
| bars = _barfunc(bins[:-1]+boffset, height, width, |
| align='center', log=log, |
| color=color, **{bottom_kwarg: bottom}) |
| patches.append(bars) |
| if stacked: |
| bottom = top |
| boffset += dw |
| |
| |
| |
| for bars in patches[1:]: |
| for patch in bars: |
| patch.sticky_edges.x[:] = patch.sticky_edges.y[:] = [] |
|
|
| elif histtype.startswith('step'): |
| |
| x = np.zeros(4 * len(bins) - 3) |
| y = np.zeros(4 * len(bins) - 3) |
|
|
| x[0:2*len(bins)-1:2], x[1:2*len(bins)-1:2] = bins, bins[:-1] |
| x[2*len(bins)-1:] = x[1:2*len(bins)-1][::-1] |
|
|
| if bottom is None: |
| bottom = 0 |
|
|
| y[1:2*len(bins)-1:2] = y[2:2*len(bins):2] = bottom |
| y[2*len(bins)-1:] = y[1:2*len(bins)-1][::-1] |
|
|
| if log: |
| if orientation == 'horizontal': |
| self.set_xscale('log', nonpositive='clip') |
| else: |
| self.set_yscale('log', nonpositive='clip') |
|
|
| if align == 'left': |
| x -= 0.5*(bins[1]-bins[0]) |
| elif align == 'right': |
| x += 0.5*(bins[1]-bins[0]) |
|
|
| |
| |
| fill = (histtype == 'stepfilled') |
|
|
| xvals, yvals = [], [] |
| for top in tops: |
| if stacked: |
| |
| y[2*len(bins)-1:] = y[1:2*len(bins)-1][::-1] |
| |
| y[1:2*len(bins)-1:2] = y[2:2*len(bins):2] = top + bottom |
|
|
| |
| |
| |
| |
| y[0] = y[-1] |
|
|
| if orientation == 'horizontal': |
| xvals.append(y.copy()) |
| yvals.append(x.copy()) |
| else: |
| xvals.append(x.copy()) |
| yvals.append(y.copy()) |
|
|
| |
| split = -1 if fill else 2 * len(bins) |
| |
| |
| |
| for x, y, color in reversed(list(zip(xvals, yvals, colors))): |
| patches.append(self.fill( |
| x[:split], y[:split], |
| closed=True if fill else None, |
| facecolor=color, |
| edgecolor=None if fill else color, |
| fill=fill if fill else None, |
| zorder=None if fill else mlines.Line2D.zorder)) |
| for patch_list in patches: |
| for patch in patch_list: |
| if orientation == 'vertical': |
| patch.sticky_edges.y.append(0) |
| elif orientation == 'horizontal': |
| patch.sticky_edges.x.append(0) |
|
|
| |
| patches.reverse() |
|
|
| |
| |
| labels = [] if label is None else np.atleast_1d(np.asarray(label, str)) |
| for patch, lbl in itertools.zip_longest(patches, labels): |
| if patch: |
| p = patch[0] |
| p._internal_update(kwargs) |
| if lbl is not None: |
| p.set_label(lbl) |
| for p in patch[1:]: |
| p._internal_update(kwargs) |
| p.set_label('_nolegend_') |
|
|
| if nx == 1: |
| return tops[0], bins, patches[0] |
| else: |
| patch_type = ("BarContainer" if histtype.startswith("bar") |
| else "list[Polygon]") |
| return tops, bins, cbook.silent_list(patch_type, patches) |
|
|
| @_preprocess_data() |
| def stairs(self, values, edges=None, *, |
| orientation='vertical', baseline=0, fill=False, **kwargs): |
| """ |
| A stepwise constant function as a line with bounding edges |
| or a filled plot. |
| |
| Parameters |
| ---------- |
| values : array-like |
| The step heights. |
| |
| edges : array-like |
| The edge positions, with ``len(edges) == len(vals) + 1``, |
| between which the curve takes on vals values. |
| |
| orientation : {'vertical', 'horizontal'}, default: 'vertical' |
| The direction of the steps. Vertical means that *values* are along |
| the y-axis, and edges are along the x-axis. |
| |
| baseline : float, array-like or None, default: 0 |
| The bottom value of the bounding edges or when |
| ``fill=True``, position of lower edge. If *fill* is |
| True or an array is passed to *baseline*, a closed |
| path is drawn. |
| |
| fill : bool, default: False |
| Whether the area under the step curve should be filled. |
| |
| Returns |
| ------- |
| StepPatch : `~matplotlib.patches.StepPatch` |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| `~matplotlib.patches.StepPatch` properties |
| |
| """ |
|
|
| if 'color' in kwargs: |
| _color = kwargs.pop('color') |
| else: |
| _color = self._get_lines.get_next_color() |
| if fill: |
| kwargs.setdefault('linewidth', 0) |
| kwargs.setdefault('facecolor', _color) |
| else: |
| kwargs.setdefault('edgecolor', _color) |
|
|
| if edges is None: |
| edges = np.arange(len(values) + 1) |
|
|
| edges, values, baseline = self._process_unit_info( |
| [("x", edges), ("y", values), ("y", baseline)], kwargs) |
|
|
| patch = mpatches.StepPatch(values, |
| edges, |
| baseline=baseline, |
| orientation=orientation, |
| fill=fill, |
| **kwargs) |
| self.add_patch(patch) |
| if baseline is None: |
| baseline = 0 |
| if orientation == 'vertical': |
| patch.sticky_edges.y.append(np.min(baseline)) |
| self.update_datalim([(edges[0], np.min(baseline))]) |
| else: |
| patch.sticky_edges.x.append(np.min(baseline)) |
| self.update_datalim([(np.min(baseline), edges[0])]) |
| self._request_autoscale_view() |
| return patch |
|
|
| @_preprocess_data(replace_names=["x", "y", "weights"]) |
| @_docstring.dedent_interpd |
| def hist2d(self, x, y, bins=10, range=None, density=False, weights=None, |
| cmin=None, cmax=None, **kwargs): |
| """ |
| Make a 2D histogram plot. |
| |
| Parameters |
| ---------- |
| x, y : array-like, shape (n, ) |
| Input values |
| |
| bins : None or int or [int, int] or array-like or [array, array] |
| |
| The bin specification: |
| |
| - If int, the number of bins for the two dimensions |
| (``nx = ny = bins``). |
| - If ``[int, int]``, the number of bins in each dimension |
| (``nx, ny = bins``). |
| - If array-like, the bin edges for the two dimensions |
| (``x_edges = y_edges = bins``). |
| - If ``[array, array]``, the bin edges in each dimension |
| (``x_edges, y_edges = bins``). |
| |
| The default value is 10. |
| |
| range : array-like shape(2, 2), optional |
| The leftmost and rightmost edges of the bins along each dimension |
| (if not specified explicitly in the bins parameters): ``[[xmin, |
| xmax], [ymin, ymax]]``. All values outside of this range will be |
| considered outliers and not tallied in the histogram. |
| |
| density : bool, default: False |
| Normalize histogram. See the documentation for the *density* |
| parameter of `~.Axes.hist` for more details. |
| |
| weights : array-like, shape (n, ), optional |
| An array of values w_i weighing each sample (x_i, y_i). |
| |
| cmin, cmax : float, default: None |
| All bins that has count less than *cmin* or more than *cmax* will not be |
| displayed (set to NaN before passing to `~.Axes.pcolormesh`) and these count |
| values in the return value count histogram will also be set to nan upon |
| return. |
| |
| Returns |
| ------- |
| h : 2D array |
| The bi-dimensional histogram of samples x and y. Values in x are |
| histogrammed along the first dimension and values in y are |
| histogrammed along the second dimension. |
| xedges : 1D array |
| The bin edges along the x-axis. |
| yedges : 1D array |
| The bin edges along the y-axis. |
| image : `~.matplotlib.collections.QuadMesh` |
| |
| Other Parameters |
| ---------------- |
| %(cmap_doc)s |
| |
| %(norm_doc)s |
| |
| %(vmin_vmax_doc)s |
| |
| alpha : ``0 <= scalar <= 1`` or ``None``, optional |
| The alpha blending value. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additional parameters are passed along to the |
| `~.Axes.pcolormesh` method and `~matplotlib.collections.QuadMesh` |
| constructor. |
| |
| See Also |
| -------- |
| hist : 1D histogram plotting |
| hexbin : 2D histogram with hexagonal bins |
| |
| Notes |
| ----- |
| - Currently ``hist2d`` calculates its own axis limits, and any limits |
| previously set are ignored. |
| - Rendering the histogram with a logarithmic color scale is |
| accomplished by passing a `.colors.LogNorm` instance to the *norm* |
| keyword argument. Likewise, power-law normalization (similar |
| in effect to gamma correction) can be accomplished with |
| `.colors.PowerNorm`. |
| """ |
|
|
| h, xedges, yedges = np.histogram2d(x, y, bins=bins, range=range, |
| density=density, weights=weights) |
|
|
| if cmin is not None: |
| h[h < cmin] = None |
| if cmax is not None: |
| h[h > cmax] = None |
|
|
| pc = self.pcolormesh(xedges, yedges, h.T, **kwargs) |
| self.set_xlim(xedges[0], xedges[-1]) |
| self.set_ylim(yedges[0], yedges[-1]) |
|
|
| return h, xedges, yedges, pc |
|
|
| @_preprocess_data(replace_names=["x", "weights"], label_namer="x") |
| @_docstring.dedent_interpd |
| def ecdf(self, x, weights=None, *, complementary=False, |
| orientation="vertical", compress=False, **kwargs): |
| """ |
| Compute and plot the empirical cumulative distribution function of *x*. |
| |
| .. versionadded:: 3.8 |
| |
| Parameters |
| ---------- |
| x : 1d array-like |
| The input data. Infinite entries are kept (and move the relevant |
| end of the ecdf from 0/1), but NaNs and masked values are errors. |
| |
| weights : 1d array-like or None, default: None |
| The weights of the entries; must have the same shape as *x*. |
| Weights corresponding to NaN data points are dropped, and then the |
| remaining weights are normalized to sum to 1. If unset, all |
| entries have the same weight. |
| |
| complementary : bool, default: False |
| Whether to plot a cumulative distribution function, which increases |
| from 0 to 1 (the default), or a complementary cumulative |
| distribution function, which decreases from 1 to 0. |
| |
| orientation : {"vertical", "horizontal"}, default: "vertical" |
| Whether the entries are plotted along the x-axis ("vertical", the |
| default) or the y-axis ("horizontal"). This parameter takes the |
| same values as in `~.Axes.hist`. |
| |
| compress : bool, default: False |
| Whether multiple entries with the same values are grouped together |
| (with a summed weight) before plotting. This is mainly useful if |
| *x* contains many identical data points, to decrease the rendering |
| complexity of the plot. If *x* contains no duplicate points, this |
| has no effect and just uses some time and memory. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| Returns |
| ------- |
| `.Line2D` |
| |
| Notes |
| ----- |
| The ecdf plot can be thought of as a cumulative histogram with one bin |
| per data entry; i.e. it reports on the entire dataset without any |
| arbitrary binning. |
| |
| If *x* contains NaNs or masked entries, either remove them first from |
| the array (if they should not taken into account), or replace them by |
| -inf or +inf (if they should be sorted at the beginning or the end of |
| the array). |
| """ |
| _api.check_in_list(["horizontal", "vertical"], orientation=orientation) |
| if "drawstyle" in kwargs or "ds" in kwargs: |
| raise TypeError("Cannot pass 'drawstyle' or 'ds' to ecdf()") |
| if np.ma.getmask(x).any(): |
| raise ValueError("ecdf() does not support masked entries") |
| x = np.asarray(x) |
| if np.isnan(x).any(): |
| raise ValueError("ecdf() does not support NaNs") |
| argsort = np.argsort(x) |
| x = x[argsort] |
| if weights is None: |
| |
| cum_weights = (1 + np.arange(len(x))) / len(x) |
| else: |
| weights = np.take(weights, argsort) |
| cum_weights = np.cumsum(weights / np.sum(weights)) |
| if compress: |
| |
| compress_idxs = [0, *(x[:-1] != x[1:]).nonzero()[0] + 1] |
| x = x[compress_idxs] |
| cum_weights = cum_weights[compress_idxs] |
| if orientation == "vertical": |
| if not complementary: |
| line, = self.plot([x[0], *x], [0, *cum_weights], |
| drawstyle="steps-post", **kwargs) |
| else: |
| line, = self.plot([*x, x[-1]], [1, *1 - cum_weights], |
| drawstyle="steps-pre", **kwargs) |
| line.sticky_edges.y[:] = [0, 1] |
| else: |
| if not complementary: |
| line, = self.plot([0, *cum_weights], [x[0], *x], |
| drawstyle="steps-pre", **kwargs) |
| else: |
| line, = self.plot([1, *1 - cum_weights], [*x, x[-1]], |
| drawstyle="steps-post", **kwargs) |
| line.sticky_edges.x[:] = [0, 1] |
| return line |
|
|
| @_preprocess_data(replace_names=["x"]) |
| @_docstring.dedent_interpd |
| def psd(self, x, NFFT=None, Fs=None, Fc=None, detrend=None, |
| window=None, noverlap=None, pad_to=None, |
| sides=None, scale_by_freq=None, return_line=None, **kwargs): |
| r""" |
| Plot the power spectral density. |
| |
| The power spectral density :math:`P_{xx}` by Welch's average |
| periodogram method. The vector *x* is divided into *NFFT* length |
| segments. Each segment is detrended by function *detrend* and |
| windowed by function *window*. *noverlap* gives the length of |
| the overlap between segments. The :math:`|\mathrm{fft}(i)|^2` |
| of each segment :math:`i` are averaged to compute :math:`P_{xx}`, |
| with a scaling to correct for power loss due to windowing. |
| |
| If len(*x*) < *NFFT*, it will be zero padded to *NFFT*. |
| |
| Parameters |
| ---------- |
| x : 1-D array or sequence |
| Array or sequence containing the data |
| |
| %(Spectral)s |
| |
| %(PSD)s |
| |
| noverlap : int, default: 0 (no overlap) |
| The number of points of overlap between segments. |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| return_line : bool, default: False |
| Whether to include the line object plotted in the returned values. |
| |
| Returns |
| ------- |
| Pxx : 1-D array |
| The values for the power spectrum :math:`P_{xx}` before scaling |
| (real valued). |
| |
| freqs : 1-D array |
| The frequencies corresponding to the elements in *Pxx*. |
| |
| line : `~matplotlib.lines.Line2D` |
| The line created by this function. |
| Only returned if *return_line* is True. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| specgram |
| Differs in the default overlap; in not returning the mean of the |
| segment periodograms; in returning the times of the segments; and |
| in plotting a colormap instead of a line. |
| magnitude_spectrum |
| Plots the magnitude spectrum. |
| csd |
| Plots the spectral density between two signals. |
| |
| Notes |
| ----- |
| For plotting, the power is plotted as |
| :math:`10\log_{10}(P_{xx})` for decibels, though *Pxx* itself |
| is returned. |
| |
| References |
| ---------- |
| Bendat & Piersol -- Random Data: Analysis and Measurement Procedures, |
| John Wiley & Sons (1986) |
| """ |
| if Fc is None: |
| Fc = 0 |
|
|
| pxx, freqs = mlab.psd(x=x, NFFT=NFFT, Fs=Fs, detrend=detrend, |
| window=window, noverlap=noverlap, pad_to=pad_to, |
| sides=sides, scale_by_freq=scale_by_freq) |
| freqs += Fc |
|
|
| if scale_by_freq in (None, True): |
| psd_units = 'dB/Hz' |
| else: |
| psd_units = 'dB' |
|
|
| line = self.plot(freqs, 10 * np.log10(pxx), **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Power Spectral Density (%s)' % psd_units) |
| self.grid(True) |
|
|
| vmin, vmax = self.get_ybound() |
| step = max(10 * int(np.log10(vmax - vmin)), 1) |
| ticks = np.arange(math.floor(vmin), math.ceil(vmax) + 1, step) |
| self.set_yticks(ticks) |
|
|
| if return_line is None or not return_line: |
| return pxx, freqs |
| else: |
| return pxx, freqs, line |
|
|
| @_preprocess_data(replace_names=["x", "y"], label_namer="y") |
| @_docstring.dedent_interpd |
| def csd(self, x, y, NFFT=None, Fs=None, Fc=None, detrend=None, |
| window=None, noverlap=None, pad_to=None, |
| sides=None, scale_by_freq=None, return_line=None, **kwargs): |
| r""" |
| Plot the cross-spectral density. |
| |
| The cross spectral density :math:`P_{xy}` by Welch's average |
| periodogram method. The vectors *x* and *y* are divided into |
| *NFFT* length segments. Each segment is detrended by function |
| *detrend* and windowed by function *window*. *noverlap* gives |
| the length of the overlap between segments. The product of |
| the direct FFTs of *x* and *y* are averaged over each segment |
| to compute :math:`P_{xy}`, with a scaling to correct for power |
| loss due to windowing. |
| |
| If len(*x*) < *NFFT* or len(*y*) < *NFFT*, they will be zero |
| padded to *NFFT*. |
| |
| Parameters |
| ---------- |
| x, y : 1-D arrays or sequences |
| Arrays or sequences containing the data. |
| |
| %(Spectral)s |
| |
| %(PSD)s |
| |
| noverlap : int, default: 0 (no overlap) |
| The number of points of overlap between segments. |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| return_line : bool, default: False |
| Whether to include the line object plotted in the returned values. |
| |
| Returns |
| ------- |
| Pxy : 1-D array |
| The values for the cross spectrum :math:`P_{xy}` before scaling |
| (complex valued). |
| |
| freqs : 1-D array |
| The frequencies corresponding to the elements in *Pxy*. |
| |
| line : `~matplotlib.lines.Line2D` |
| The line created by this function. |
| Only returned if *return_line* is True. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| psd : is equivalent to setting ``y = x``. |
| |
| Notes |
| ----- |
| For plotting, the power is plotted as |
| :math:`10 \log_{10}(P_{xy})` for decibels, though :math:`P_{xy}` itself |
| is returned. |
| |
| References |
| ---------- |
| Bendat & Piersol -- Random Data: Analysis and Measurement Procedures, |
| John Wiley & Sons (1986) |
| """ |
| if Fc is None: |
| Fc = 0 |
|
|
| pxy, freqs = mlab.csd(x=x, y=y, NFFT=NFFT, Fs=Fs, detrend=detrend, |
| window=window, noverlap=noverlap, pad_to=pad_to, |
| sides=sides, scale_by_freq=scale_by_freq) |
| |
| freqs += Fc |
|
|
| line = self.plot(freqs, 10 * np.log10(np.abs(pxy)), **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Cross Spectrum Magnitude (dB)') |
| self.grid(True) |
|
|
| vmin, vmax = self.get_ybound() |
| step = max(10 * int(np.log10(vmax - vmin)), 1) |
| ticks = np.arange(math.floor(vmin), math.ceil(vmax) + 1, step) |
| self.set_yticks(ticks) |
|
|
| if return_line is None or not return_line: |
| return pxy, freqs |
| else: |
| return pxy, freqs, line |
|
|
| @_preprocess_data(replace_names=["x"]) |
| @_docstring.dedent_interpd |
| def magnitude_spectrum(self, x, Fs=None, Fc=None, window=None, |
| pad_to=None, sides=None, scale=None, |
| **kwargs): |
| """ |
| Plot the magnitude spectrum. |
| |
| Compute the magnitude spectrum of *x*. Data is padded to a |
| length of *pad_to* and the windowing function *window* is applied to |
| the signal. |
| |
| Parameters |
| ---------- |
| x : 1-D array or sequence |
| Array or sequence containing the data. |
| |
| %(Spectral)s |
| |
| %(Single_Spectrum)s |
| |
| scale : {'default', 'linear', 'dB'} |
| The scaling of the values in the *spec*. 'linear' is no scaling. |
| 'dB' returns the values in dB scale, i.e., the dB amplitude |
| (20 * log10). 'default' is 'linear'. |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| Returns |
| ------- |
| spectrum : 1-D array |
| The values for the magnitude spectrum before scaling (real valued). |
| |
| freqs : 1-D array |
| The frequencies corresponding to the elements in *spectrum*. |
| |
| line : `~matplotlib.lines.Line2D` |
| The line created by this function. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| psd |
| Plots the power spectral density. |
| angle_spectrum |
| Plots the angles of the corresponding frequencies. |
| phase_spectrum |
| Plots the phase (unwrapped angle) of the corresponding frequencies. |
| specgram |
| Can plot the magnitude spectrum of segments within the signal in a |
| colormap. |
| """ |
| if Fc is None: |
| Fc = 0 |
|
|
| spec, freqs = mlab.magnitude_spectrum(x=x, Fs=Fs, window=window, |
| pad_to=pad_to, sides=sides) |
| freqs += Fc |
|
|
| yunits = _api.check_getitem( |
| {None: 'energy', 'default': 'energy', 'linear': 'energy', |
| 'dB': 'dB'}, |
| scale=scale) |
| if yunits == 'energy': |
| Z = spec |
| else: |
| Z = 20. * np.log10(spec) |
|
|
| line, = self.plot(freqs, Z, **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Magnitude (%s)' % yunits) |
|
|
| return spec, freqs, line |
|
|
| @_preprocess_data(replace_names=["x"]) |
| @_docstring.dedent_interpd |
| def angle_spectrum(self, x, Fs=None, Fc=None, window=None, |
| pad_to=None, sides=None, **kwargs): |
| """ |
| Plot the angle spectrum. |
| |
| Compute the angle spectrum (wrapped phase spectrum) of *x*. |
| Data is padded to a length of *pad_to* and the windowing function |
| *window* is applied to the signal. |
| |
| Parameters |
| ---------- |
| x : 1-D array or sequence |
| Array or sequence containing the data. |
| |
| %(Spectral)s |
| |
| %(Single_Spectrum)s |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| Returns |
| ------- |
| spectrum : 1-D array |
| The values for the angle spectrum in radians (real valued). |
| |
| freqs : 1-D array |
| The frequencies corresponding to the elements in *spectrum*. |
| |
| line : `~matplotlib.lines.Line2D` |
| The line created by this function. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| magnitude_spectrum |
| Plots the magnitudes of the corresponding frequencies. |
| phase_spectrum |
| Plots the unwrapped version of this function. |
| specgram |
| Can plot the angle spectrum of segments within the signal in a |
| colormap. |
| """ |
| if Fc is None: |
| Fc = 0 |
|
|
| spec, freqs = mlab.angle_spectrum(x=x, Fs=Fs, window=window, |
| pad_to=pad_to, sides=sides) |
| freqs += Fc |
|
|
| lines = self.plot(freqs, spec, **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Angle (radians)') |
|
|
| return spec, freqs, lines[0] |
|
|
| @_preprocess_data(replace_names=["x"]) |
| @_docstring.dedent_interpd |
| def phase_spectrum(self, x, Fs=None, Fc=None, window=None, |
| pad_to=None, sides=None, **kwargs): |
| """ |
| Plot the phase spectrum. |
| |
| Compute the phase spectrum (unwrapped angle spectrum) of *x*. |
| Data is padded to a length of *pad_to* and the windowing function |
| *window* is applied to the signal. |
| |
| Parameters |
| ---------- |
| x : 1-D array or sequence |
| Array or sequence containing the data |
| |
| %(Spectral)s |
| |
| %(Single_Spectrum)s |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| Returns |
| ------- |
| spectrum : 1-D array |
| The values for the phase spectrum in radians (real valued). |
| |
| freqs : 1-D array |
| The frequencies corresponding to the elements in *spectrum*. |
| |
| line : `~matplotlib.lines.Line2D` |
| The line created by this function. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| See Also |
| -------- |
| magnitude_spectrum |
| Plots the magnitudes of the corresponding frequencies. |
| angle_spectrum |
| Plots the wrapped version of this function. |
| specgram |
| Can plot the phase spectrum of segments within the signal in a |
| colormap. |
| """ |
| if Fc is None: |
| Fc = 0 |
|
|
| spec, freqs = mlab.phase_spectrum(x=x, Fs=Fs, window=window, |
| pad_to=pad_to, sides=sides) |
| freqs += Fc |
|
|
| lines = self.plot(freqs, spec, **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Phase (radians)') |
|
|
| return spec, freqs, lines[0] |
|
|
| @_preprocess_data(replace_names=["x", "y"]) |
| @_docstring.dedent_interpd |
| def cohere(self, x, y, NFFT=256, Fs=2, Fc=0, detrend=mlab.detrend_none, |
| window=mlab.window_hanning, noverlap=0, pad_to=None, |
| sides='default', scale_by_freq=None, **kwargs): |
| r""" |
| Plot the coherence between *x* and *y*. |
| |
| Coherence is the normalized cross spectral density: |
| |
| .. math:: |
| |
| C_{xy} = \frac{|P_{xy}|^2}{P_{xx}P_{yy}} |
| |
| Parameters |
| ---------- |
| %(Spectral)s |
| |
| %(PSD)s |
| |
| noverlap : int, default: 0 (no overlap) |
| The number of points of overlap between blocks. |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| Returns |
| ------- |
| Cxy : 1-D array |
| The coherence vector. |
| |
| freqs : 1-D array |
| The frequencies for the elements in *Cxy*. |
| |
| Other Parameters |
| ---------------- |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Keyword arguments control the `.Line2D` properties: |
| |
| %(Line2D:kwdoc)s |
| |
| References |
| ---------- |
| Bendat & Piersol -- Random Data: Analysis and Measurement Procedures, |
| John Wiley & Sons (1986) |
| """ |
| cxy, freqs = mlab.cohere(x=x, y=y, NFFT=NFFT, Fs=Fs, detrend=detrend, |
| window=window, noverlap=noverlap, |
| scale_by_freq=scale_by_freq, sides=sides, |
| pad_to=pad_to) |
| freqs += Fc |
|
|
| self.plot(freqs, cxy, **kwargs) |
| self.set_xlabel('Frequency') |
| self.set_ylabel('Coherence') |
| self.grid(True) |
|
|
| return cxy, freqs |
|
|
| @_preprocess_data(replace_names=["x"]) |
| @_docstring.dedent_interpd |
| def specgram(self, x, NFFT=None, Fs=None, Fc=None, detrend=None, |
| window=None, noverlap=None, |
| cmap=None, xextent=None, pad_to=None, sides=None, |
| scale_by_freq=None, mode=None, scale=None, |
| vmin=None, vmax=None, **kwargs): |
| """ |
| Plot a spectrogram. |
| |
| Compute and plot a spectrogram of data in *x*. Data are split into |
| *NFFT* length segments and the spectrum of each section is |
| computed. The windowing function *window* is applied to each |
| segment, and the amount of overlap of each segment is |
| specified with *noverlap*. The spectrogram is plotted as a colormap |
| (using imshow). |
| |
| Parameters |
| ---------- |
| x : 1-D array or sequence |
| Array or sequence containing the data. |
| |
| %(Spectral)s |
| |
| %(PSD)s |
| |
| mode : {'default', 'psd', 'magnitude', 'angle', 'phase'} |
| What sort of spectrum to use. Default is 'psd', which takes the |
| power spectral density. 'magnitude' returns the magnitude |
| spectrum. 'angle' returns the phase spectrum without unwrapping. |
| 'phase' returns the phase spectrum with unwrapping. |
| |
| noverlap : int, default: 128 |
| The number of points of overlap between blocks. |
| |
| scale : {'default', 'linear', 'dB'} |
| The scaling of the values in the *spec*. 'linear' is no scaling. |
| 'dB' returns the values in dB scale. When *mode* is 'psd', |
| this is dB power (10 * log10). Otherwise, this is dB amplitude |
| (20 * log10). 'default' is 'dB' if *mode* is 'psd' or |
| 'magnitude' and 'linear' otherwise. This must be 'linear' |
| if *mode* is 'angle' or 'phase'. |
| |
| Fc : int, default: 0 |
| The center frequency of *x*, which offsets the x extents of the |
| plot to reflect the frequency range used when a signal is acquired |
| and then filtered and downsampled to baseband. |
| |
| cmap : `.Colormap`, default: :rc:`image.cmap` |
| |
| xextent : *None* or (xmin, xmax) |
| The image extent along the x-axis. The default sets *xmin* to the |
| left border of the first bin (*spectrum* column) and *xmax* to the |
| right border of the last bin. Note that for *noverlap>0* the width |
| of the bins is smaller than those of the segments. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| **kwargs |
| Additional keyword arguments are passed on to `~.axes.Axes.imshow` |
| which makes the specgram image. The origin keyword argument |
| is not supported. |
| |
| Returns |
| ------- |
| spectrum : 2D array |
| Columns are the periodograms of successive segments. |
| |
| freqs : 1-D array |
| The frequencies corresponding to the rows in *spectrum*. |
| |
| t : 1-D array |
| The times corresponding to midpoints of segments (i.e., the columns |
| in *spectrum*). |
| |
| im : `.AxesImage` |
| The image created by imshow containing the spectrogram. |
| |
| See Also |
| -------- |
| psd |
| Differs in the default overlap; in returning the mean of the |
| segment periodograms; in not returning times; and in generating a |
| line plot instead of colormap. |
| magnitude_spectrum |
| A single spectrum, similar to having a single segment when *mode* |
| is 'magnitude'. Plots a line instead of a colormap. |
| angle_spectrum |
| A single spectrum, similar to having a single segment when *mode* |
| is 'angle'. Plots a line instead of a colormap. |
| phase_spectrum |
| A single spectrum, similar to having a single segment when *mode* |
| is 'phase'. Plots a line instead of a colormap. |
| |
| Notes |
| ----- |
| The parameters *detrend* and *scale_by_freq* do only apply when *mode* |
| is set to 'psd'. |
| """ |
| if NFFT is None: |
| NFFT = 256 |
| if Fc is None: |
| Fc = 0 |
| if noverlap is None: |
| noverlap = 128 |
| if Fs is None: |
| Fs = 2 |
|
|
| if mode == 'complex': |
| raise ValueError('Cannot plot a complex specgram') |
|
|
| if scale is None or scale == 'default': |
| if mode in ['angle', 'phase']: |
| scale = 'linear' |
| else: |
| scale = 'dB' |
| elif mode in ['angle', 'phase'] and scale == 'dB': |
| raise ValueError('Cannot use dB scale with angle or phase mode') |
|
|
| spec, freqs, t = mlab.specgram(x=x, NFFT=NFFT, Fs=Fs, |
| detrend=detrend, window=window, |
| noverlap=noverlap, pad_to=pad_to, |
| sides=sides, |
| scale_by_freq=scale_by_freq, |
| mode=mode) |
|
|
| if scale == 'linear': |
| Z = spec |
| elif scale == 'dB': |
| if mode is None or mode == 'default' or mode == 'psd': |
| Z = 10. * np.log10(spec) |
| else: |
| Z = 20. * np.log10(spec) |
| else: |
| raise ValueError(f'Unknown scale {scale!r}') |
|
|
| Z = np.flipud(Z) |
|
|
| if xextent is None: |
| |
| pad_xextent = (NFFT-noverlap) / Fs / 2 |
| xextent = np.min(t) - pad_xextent, np.max(t) + pad_xextent |
| xmin, xmax = xextent |
| freqs += Fc |
| extent = xmin, xmax, freqs[0], freqs[-1] |
|
|
| if 'origin' in kwargs: |
| raise _api.kwarg_error("specgram", "origin") |
|
|
| im = self.imshow(Z, cmap, extent=extent, vmin=vmin, vmax=vmax, |
| origin='upper', **kwargs) |
| self.axis('auto') |
|
|
| return spec, freqs, t, im |
|
|
| @_docstring.dedent_interpd |
| def spy(self, Z, precision=0, marker=None, markersize=None, |
| aspect='equal', origin="upper", **kwargs): |
| """ |
| Plot the sparsity pattern of a 2D array. |
| |
| This visualizes the non-zero values of the array. |
| |
| Two plotting styles are available: image and marker. Both |
| are available for full arrays, but only the marker style |
| works for `scipy.sparse.spmatrix` instances. |
| |
| **Image style** |
| |
| If *marker* and *markersize* are *None*, `~.Axes.imshow` is used. Any |
| extra remaining keyword arguments are passed to this method. |
| |
| **Marker style** |
| |
| If *Z* is a `scipy.sparse.spmatrix` or *marker* or *markersize* are |
| *None*, a `.Line2D` object will be returned with the value of marker |
| determining the marker type, and any remaining keyword arguments |
| passed to `~.Axes.plot`. |
| |
| Parameters |
| ---------- |
| Z : (M, N) array-like |
| The array to be plotted. |
| |
| precision : float or 'present', default: 0 |
| If *precision* is 0, any non-zero value will be plotted. Otherwise, |
| values of :math:`|Z| > precision` will be plotted. |
| |
| For `scipy.sparse.spmatrix` instances, you can also |
| pass 'present'. In this case any value present in the array |
| will be plotted, even if it is identically zero. |
| |
| aspect : {'equal', 'auto', None} or float, default: 'equal' |
| The aspect ratio of the Axes. This parameter is particularly |
| relevant for images since it determines whether data pixels are |
| square. |
| |
| This parameter is a shortcut for explicitly calling |
| `.Axes.set_aspect`. See there for further details. |
| |
| - 'equal': Ensures an aspect ratio of 1. Pixels will be square. |
| - 'auto': The Axes is kept fixed and the aspect is adjusted so |
| that the data fit in the Axes. In general, this will result in |
| non-square pixels. |
| - *None*: Use :rc:`image.aspect`. |
| |
| origin : {'upper', 'lower'}, default: :rc:`image.origin` |
| Place the [0, 0] index of the array in the upper left or lower left |
| corner of the Axes. The convention 'upper' is typically used for |
| matrices and images. |
| |
| Returns |
| ------- |
| `~matplotlib.image.AxesImage` or `.Line2D` |
| The return type depends on the plotting style (see above). |
| |
| Other Parameters |
| ---------------- |
| **kwargs |
| The supported additional parameters depend on the plotting style. |
| |
| For the image style, you can pass the following additional |
| parameters of `~.Axes.imshow`: |
| |
| - *cmap* |
| - *alpha* |
| - *url* |
| - any `.Artist` properties (passed on to the `.AxesImage`) |
| |
| For the marker style, you can pass any `.Line2D` property except |
| for *linestyle*: |
| |
| %(Line2D:kwdoc)s |
| """ |
| if marker is None and markersize is None and hasattr(Z, 'tocoo'): |
| marker = 's' |
| _api.check_in_list(["upper", "lower"], origin=origin) |
| if marker is None and markersize is None: |
| Z = np.asarray(Z) |
| mask = np.abs(Z) > precision |
|
|
| if 'cmap' not in kwargs: |
| kwargs['cmap'] = mcolors.ListedColormap(['w', 'k'], |
| name='binary') |
| if 'interpolation' in kwargs: |
| raise _api.kwarg_error("spy", "interpolation") |
| if 'norm' not in kwargs: |
| kwargs['norm'] = mcolors.NoNorm() |
| ret = self.imshow(mask, interpolation='nearest', |
| aspect=aspect, origin=origin, |
| **kwargs) |
| else: |
| if hasattr(Z, 'tocoo'): |
| c = Z.tocoo() |
| if precision == 'present': |
| y = c.row |
| x = c.col |
| else: |
| nonzero = np.abs(c.data) > precision |
| y = c.row[nonzero] |
| x = c.col[nonzero] |
| else: |
| Z = np.asarray(Z) |
| nonzero = np.abs(Z) > precision |
| y, x = np.nonzero(nonzero) |
| if marker is None: |
| marker = 's' |
| if markersize is None: |
| markersize = 10 |
| if 'linestyle' in kwargs: |
| raise _api.kwarg_error("spy", "linestyle") |
| ret = mlines.Line2D( |
| x, y, linestyle='None', marker=marker, markersize=markersize, |
| **kwargs) |
| self.add_line(ret) |
| nr, nc = Z.shape |
| self.set_xlim(-0.5, nc - 0.5) |
| if origin == "upper": |
| self.set_ylim(nr - 0.5, -0.5) |
| else: |
| self.set_ylim(-0.5, nr - 0.5) |
| self.set_aspect(aspect) |
| self.title.set_y(1.05) |
| if origin == "upper": |
| self.xaxis.tick_top() |
| else: |
| self.xaxis.tick_bottom() |
| self.xaxis.set_ticks_position('both') |
| self.xaxis.set_major_locator( |
| mticker.MaxNLocator(nbins=9, steps=[1, 2, 5, 10], integer=True)) |
| self.yaxis.set_major_locator( |
| mticker.MaxNLocator(nbins=9, steps=[1, 2, 5, 10], integer=True)) |
| return ret |
|
|
| def matshow(self, Z, **kwargs): |
| """ |
| Plot the values of a 2D matrix or array as color-coded image. |
| |
| The matrix will be shown the way it would be printed, with the first |
| row at the top. Row and column numbering is zero-based. |
| |
| Parameters |
| ---------- |
| Z : (M, N) array-like |
| The matrix to be displayed. |
| |
| Returns |
| ------- |
| `~matplotlib.image.AxesImage` |
| |
| Other Parameters |
| ---------------- |
| **kwargs : `~matplotlib.axes.Axes.imshow` arguments |
| |
| See Also |
| -------- |
| imshow : More general function to plot data on a 2D regular raster. |
| |
| Notes |
| ----- |
| This is just a convenience function wrapping `.imshow` to set useful |
| defaults for displaying a matrix. In particular: |
| |
| - Set ``origin='upper'``. |
| - Set ``interpolation='nearest'``. |
| - Set ``aspect='equal'``. |
| - Ticks are placed to the left and above. |
| - Ticks are formatted to show integer indices. |
| |
| """ |
| Z = np.asanyarray(Z) |
| kw = {'origin': 'upper', |
| 'interpolation': 'nearest', |
| 'aspect': 'equal', |
| **kwargs} |
| im = self.imshow(Z, **kw) |
| self.title.set_y(1.05) |
| self.xaxis.tick_top() |
| self.xaxis.set_ticks_position('both') |
| self.xaxis.set_major_locator( |
| mticker.MaxNLocator(nbins=9, steps=[1, 2, 5, 10], integer=True)) |
| self.yaxis.set_major_locator( |
| mticker.MaxNLocator(nbins=9, steps=[1, 2, 5, 10], integer=True)) |
| return im |
|
|
| @_preprocess_data(replace_names=["dataset"]) |
| def violinplot(self, dataset, positions=None, vert=True, widths=0.5, |
| showmeans=False, showextrema=True, showmedians=False, |
| quantiles=None, points=100, bw_method=None): |
| """ |
| Make a violin plot. |
| |
| Make a violin plot for each column of *dataset* or each vector in |
| sequence *dataset*. Each filled area extends to represent the |
| entire data range, with optional lines at the mean, the median, |
| the minimum, the maximum, and user-specified quantiles. |
| |
| Parameters |
| ---------- |
| dataset : Array or a sequence of vectors. |
| The input data. |
| |
| positions : array-like, default: [1, 2, ..., n] |
| The positions of the violins. The ticks and limits are |
| automatically set to match the positions. |
| |
| vert : bool, default: True. |
| If true, creates a vertical violin plot. |
| Otherwise, creates a horizontal violin plot. |
| |
| widths : array-like, default: 0.5 |
| Either a scalar or a vector that sets the maximal width of |
| each violin. The default is 0.5, which uses about half of the |
| available horizontal space. |
| |
| showmeans : bool, default: False |
| If `True`, will toggle rendering of the means. |
| |
| showextrema : bool, default: True |
| If `True`, will toggle rendering of the extrema. |
| |
| showmedians : bool, default: False |
| If `True`, will toggle rendering of the medians. |
| |
| quantiles : array-like, default: None |
| If not None, set a list of floats in interval [0, 1] for each violin, |
| which stands for the quantiles that will be rendered for that |
| violin. |
| |
| points : int, default: 100 |
| Defines the number of points to evaluate each of the |
| gaussian kernel density estimations at. |
| |
| bw_method : str, scalar or callable, optional |
| The method used to calculate the estimator bandwidth. This can be |
| 'scott', 'silverman', a scalar constant or a callable. If a |
| scalar, this will be used directly as `kde.factor`. If a |
| callable, it should take a `matplotlib.mlab.GaussianKDE` instance as |
| its only parameter and return a scalar. If None (default), 'scott' |
| is used. |
| |
| data : indexable object, optional |
| DATA_PARAMETER_PLACEHOLDER |
| |
| Returns |
| ------- |
| dict |
| A dictionary mapping each component of the violinplot to a |
| list of the corresponding collection instances created. The |
| dictionary has the following keys: |
| |
| - ``bodies``: A list of the `~.collections.PolyCollection` |
| instances containing the filled area of each violin. |
| |
| - ``cmeans``: A `~.collections.LineCollection` instance that marks |
| the mean values of each of the violin's distribution. |
| |
| - ``cmins``: A `~.collections.LineCollection` instance that marks |
| the bottom of each violin's distribution. |
| |
| - ``cmaxes``: A `~.collections.LineCollection` instance that marks |
| the top of each violin's distribution. |
| |
| - ``cbars``: A `~.collections.LineCollection` instance that marks |
| the centers of each violin's distribution. |
| |
| - ``cmedians``: A `~.collections.LineCollection` instance that |
| marks the median values of each of the violin's distribution. |
| |
| - ``cquantiles``: A `~.collections.LineCollection` instance created |
| to identify the quantile values of each of the violin's |
| distribution. |
| |
| """ |
|
|
| def _kde_method(X, coords): |
| |
| X = cbook._unpack_to_numpy(X) |
| |
| if np.all(X[0] == X): |
| return (X[0] == coords).astype(float) |
| kde = mlab.GaussianKDE(X, bw_method) |
| return kde.evaluate(coords) |
|
|
| vpstats = cbook.violin_stats(dataset, _kde_method, points=points, |
| quantiles=quantiles) |
| return self.violin(vpstats, positions=positions, vert=vert, |
| widths=widths, showmeans=showmeans, |
| showextrema=showextrema, showmedians=showmedians) |
|
|
| def violin(self, vpstats, positions=None, vert=True, widths=0.5, |
| showmeans=False, showextrema=True, showmedians=False): |
| """ |
| Drawing function for violin plots. |
| |
| Draw a violin plot for each column of *vpstats*. Each filled area |
| extends to represent the entire data range, with optional lines at the |
| mean, the median, the minimum, the maximum, and the quantiles values. |
| |
| Parameters |
| ---------- |
| vpstats : list of dicts |
| A list of dictionaries containing stats for each violin plot. |
| Required keys are: |
| |
| - ``coords``: A list of scalars containing the coordinates that |
| the violin's kernel density estimate were evaluated at. |
| |
| - ``vals``: A list of scalars containing the values of the |
| kernel density estimate at each of the coordinates given |
| in *coords*. |
| |
| - ``mean``: The mean value for this violin's dataset. |
| |
| - ``median``: The median value for this violin's dataset. |
| |
| - ``min``: The minimum value for this violin's dataset. |
| |
| - ``max``: The maximum value for this violin's dataset. |
| |
| Optional keys are: |
| |
| - ``quantiles``: A list of scalars containing the quantile values |
| for this violin's dataset. |
| |
| positions : array-like, default: [1, 2, ..., n] |
| The positions of the violins. The ticks and limits are |
| automatically set to match the positions. |
| |
| vert : bool, default: True. |
| If true, plots the violins vertically. |
| Otherwise, plots the violins horizontally. |
| |
| widths : array-like, default: 0.5 |
| Either a scalar or a vector that sets the maximal width of |
| each violin. The default is 0.5, which uses about half of the |
| available horizontal space. |
| |
| showmeans : bool, default: False |
| If true, will toggle rendering of the means. |
| |
| showextrema : bool, default: True |
| If true, will toggle rendering of the extrema. |
| |
| showmedians : bool, default: False |
| If true, will toggle rendering of the medians. |
| |
| Returns |
| ------- |
| dict |
| A dictionary mapping each component of the violinplot to a |
| list of the corresponding collection instances created. The |
| dictionary has the following keys: |
| |
| - ``bodies``: A list of the `~.collections.PolyCollection` |
| instances containing the filled area of each violin. |
| |
| - ``cmeans``: A `~.collections.LineCollection` instance that marks |
| the mean values of each of the violin's distribution. |
| |
| - ``cmins``: A `~.collections.LineCollection` instance that marks |
| the bottom of each violin's distribution. |
| |
| - ``cmaxes``: A `~.collections.LineCollection` instance that marks |
| the top of each violin's distribution. |
| |
| - ``cbars``: A `~.collections.LineCollection` instance that marks |
| the centers of each violin's distribution. |
| |
| - ``cmedians``: A `~.collections.LineCollection` instance that |
| marks the median values of each of the violin's distribution. |
| |
| - ``cquantiles``: A `~.collections.LineCollection` instance created |
| to identify the quantiles values of each of the violin's |
| distribution. |
| """ |
|
|
| |
| means = [] |
| mins = [] |
| maxes = [] |
| medians = [] |
| quantiles = [] |
|
|
| qlens = [] |
|
|
| artists = {} |
|
|
| N = len(vpstats) |
| datashape_message = ("List of violinplot statistics and `{0}` " |
| "values must have the same length") |
|
|
| |
| if positions is None: |
| positions = range(1, N + 1) |
| elif len(positions) != N: |
| raise ValueError(datashape_message.format("positions")) |
|
|
| |
| if np.isscalar(widths): |
| widths = [widths] * N |
| elif len(widths) != N: |
| raise ValueError(datashape_message.format("widths")) |
|
|
| |
| line_ends = [[-0.25], [0.25]] * np.array(widths) + positions |
|
|
| |
| if mpl.rcParams['_internal.classic_mode']: |
| fillcolor = 'y' |
| linecolor = 'r' |
| else: |
| fillcolor = linecolor = self._get_lines.get_next_color() |
|
|
| |
| if vert: |
| fill = self.fill_betweenx |
| perp_lines = functools.partial(self.hlines, colors=linecolor) |
| par_lines = functools.partial(self.vlines, colors=linecolor) |
| else: |
| fill = self.fill_between |
| perp_lines = functools.partial(self.vlines, colors=linecolor) |
| par_lines = functools.partial(self.hlines, colors=linecolor) |
|
|
| |
| bodies = [] |
| for stats, pos, width in zip(vpstats, positions, widths): |
| |
| vals = np.array(stats['vals']) |
| vals = 0.5 * width * vals / vals.max() |
| bodies += [fill(stats['coords'], -vals + pos, vals + pos, |
| facecolor=fillcolor, alpha=0.3)] |
| means.append(stats['mean']) |
| mins.append(stats['min']) |
| maxes.append(stats['max']) |
| medians.append(stats['median']) |
| q = stats.get('quantiles') |
| if q is None: |
| q = [] |
| quantiles.extend(q) |
| qlens.append(len(q)) |
| artists['bodies'] = bodies |
|
|
| if showmeans: |
| artists['cmeans'] = perp_lines(means, *line_ends) |
| if showextrema: |
| artists['cmaxes'] = perp_lines(maxes, *line_ends) |
| artists['cmins'] = perp_lines(mins, *line_ends) |
| artists['cbars'] = par_lines(positions, mins, maxes) |
| if showmedians: |
| artists['cmedians'] = perp_lines(medians, *line_ends) |
| if quantiles: |
| artists['cquantiles'] = perp_lines( |
| quantiles, *np.repeat(line_ends, qlens, axis=1)) |
|
|
| return artists |
|
|
| |
|
|
| table = mtable.table |
|
|
| |
| stackplot = _preprocess_data()(mstack.stackplot) |
|
|
| streamplot = _preprocess_data( |
| replace_names=["x", "y", "u", "v", "start_points"])(mstream.streamplot) |
|
|
| tricontour = mtri.tricontour |
| tricontourf = mtri.tricontourf |
| tripcolor = mtri.tripcolor |
| triplot = mtri.triplot |
|
|
| def _get_aspect_ratio(self): |
| """ |
| Convenience method to calculate the aspect ratio of the axes in |
| the display coordinate system. |
| """ |
| figure_size = self.get_figure().get_size_inches() |
| ll, ur = self.get_position() * figure_size |
| width, height = ur - ll |
| return height / (width * self.get_data_ratio()) |
|
|