| """ |
| A context object for caching a function's return value each time it |
| is called with the same input arguments. |
| |
| """ |
|
|
| |
| |
| |
|
|
|
|
| from __future__ import with_statement |
| import logging |
| import os |
| from textwrap import dedent |
| import time |
| import pathlib |
| import pydoc |
| import re |
| import functools |
| import traceback |
| import warnings |
| import inspect |
| import weakref |
| from datetime import timedelta |
|
|
| from tokenize import open as open_py_source |
|
|
| |
| from . import hashing |
| from .func_inspect import get_func_code, get_func_name, filter_args |
| from .func_inspect import format_call |
| from .func_inspect import format_signature |
| from .logger import Logger, format_time, pformat |
| from ._store_backends import StoreBackendBase, FileSystemStoreBackend |
| from ._store_backends import CacheWarning |
|
|
|
|
| FIRST_LINE_TEXT = "# first line:" |
|
|
| |
| |
| |
| |
| |
| |
| |
| |
|
|
| |
| |
|
|
|
|
| def extract_first_line(func_code): |
| """ Extract the first line information from the function code |
| text if available. |
| """ |
| if func_code.startswith(FIRST_LINE_TEXT): |
| func_code = func_code.split('\n') |
| first_line = int(func_code[0][len(FIRST_LINE_TEXT):]) |
| func_code = '\n'.join(func_code[1:]) |
| else: |
| first_line = -1 |
| return func_code, first_line |
|
|
|
|
| class JobLibCollisionWarning(UserWarning): |
| """ Warn that there might be a collision between names of functions. |
| """ |
|
|
|
|
| _STORE_BACKENDS = {'local': FileSystemStoreBackend} |
|
|
|
|
| def register_store_backend(backend_name, backend): |
| """Extend available store backends. |
| |
| The Memory, MemorizeResult and MemorizeFunc objects are designed to be |
| agnostic to the type of store used behind. By default, the local file |
| system is used but this function gives the possibility to extend joblib's |
| memory pattern with other types of storage such as cloud storage (S3, GCS, |
| OpenStack, HadoopFS, etc) or blob DBs. |
| |
| Parameters |
| ---------- |
| backend_name: str |
| The name identifying the store backend being registered. For example, |
| 'local' is used with FileSystemStoreBackend. |
| backend: StoreBackendBase subclass |
| The name of a class that implements the StoreBackendBase interface. |
| |
| """ |
| if not isinstance(backend_name, str): |
| raise ValueError("Store backend name should be a string, " |
| "'{0}' given.".format(backend_name)) |
| if backend is None or not issubclass(backend, StoreBackendBase): |
| raise ValueError("Store backend should inherit " |
| "StoreBackendBase, " |
| "'{0}' given.".format(backend)) |
|
|
| _STORE_BACKENDS[backend_name] = backend |
|
|
|
|
| def _store_backend_factory(backend, location, verbose=0, backend_options=None): |
| """Return the correct store object for the given location.""" |
| if backend_options is None: |
| backend_options = {} |
|
|
| if isinstance(location, pathlib.Path): |
| location = str(location) |
|
|
| if isinstance(location, StoreBackendBase): |
| return location |
| elif isinstance(location, str): |
| obj = None |
| location = os.path.expanduser(location) |
| |
| |
| |
| for backend_key, backend_obj in _STORE_BACKENDS.items(): |
| if backend == backend_key: |
| obj = backend_obj() |
|
|
| |
| |
| if obj is None: |
| raise TypeError('Unknown location {0} or backend {1}'.format( |
| location, backend)) |
|
|
| |
| |
| obj.configure(location, verbose=verbose, |
| backend_options=backend_options) |
| return obj |
| elif location is not None: |
| warnings.warn( |
| "Instantiating a backend using a {} as a location is not " |
| "supported by joblib. Returning None instead.".format( |
| location.__class__.__name__), UserWarning) |
|
|
| return None |
|
|
|
|
| def _get_func_fullname(func): |
| """Compute the part of part associated with a function.""" |
| modules, funcname = get_func_name(func) |
| modules.append(funcname) |
| return os.path.join(*modules) |
|
|
|
|
| def _build_func_identifier(func): |
| """Build a roughly unique identifier for the cached function.""" |
| parts = [] |
| if isinstance(func, str): |
| parts.append(func) |
| else: |
| parts.append(_get_func_fullname(func)) |
|
|
| |
| return os.path.join(*parts) |
|
|
|
|
| def _format_load_msg(func_id, args_id, timestamp=None, metadata=None): |
| """ Helper function to format the message when loading the results. |
| """ |
| signature = "" |
| try: |
| if metadata is not None: |
| args = ", ".join(['%s=%s' % (name, value) |
| for name, value |
| in metadata['input_args'].items()]) |
| signature = "%s(%s)" % (os.path.basename(func_id), args) |
| else: |
| signature = os.path.basename(func_id) |
| except KeyError: |
| pass |
|
|
| if timestamp is not None: |
| ts_string = "{0: <16}".format(format_time(time.time() - timestamp)) |
| else: |
| ts_string = "" |
| return '[Memory]{0}: Loading {1}'.format(ts_string, str(signature)) |
|
|
|
|
| |
| |
| _FUNCTION_HASHES = weakref.WeakKeyDictionary() |
|
|
|
|
| |
| |
| |
| class MemorizedResult(Logger): |
| """Object representing a cached value. |
| |
| Attributes |
| ---------- |
| location: str |
| The location of joblib cache. Depends on the store backend used. |
| |
| func: function or str |
| function whose output is cached. The string case is intended only for |
| instantiation based on the output of repr() on another instance. |
| (namely eval(repr(memorized_instance)) works). |
| |
| argument_hash: str |
| hash of the function arguments. |
| |
| backend: str |
| Type of store backend for reading/writing cache files. |
| Default is 'local'. |
| |
| mmap_mode: {None, 'r+', 'r', 'w+', 'c'} |
| The memmapping mode used when loading from cache numpy arrays. See |
| numpy.load for the meaning of the different values. |
| |
| verbose: int |
| verbosity level (0 means no message). |
| |
| timestamp, metadata: string |
| for internal use only. |
| """ |
| def __init__(self, location, func, args_id, backend='local', |
| mmap_mode=None, verbose=0, timestamp=None, metadata=None): |
| Logger.__init__(self) |
| self.func_id = _build_func_identifier(func) |
| if isinstance(func, str): |
| self.func = func |
| else: |
| self.func = self.func_id |
| self.args_id = args_id |
| self.store_backend = _store_backend_factory(backend, location, |
| verbose=verbose) |
| self.mmap_mode = mmap_mode |
|
|
| if metadata is not None: |
| self.metadata = metadata |
| else: |
| self.metadata = self.store_backend.get_metadata( |
| [self.func_id, self.args_id]) |
|
|
| self.duration = self.metadata.get('duration', None) |
| self.verbose = verbose |
| self.timestamp = timestamp |
|
|
| @property |
| def argument_hash(self): |
| warnings.warn( |
| "The 'argument_hash' attribute has been deprecated in version " |
| "0.12 and will be removed in version 0.14.\n" |
| "Use `args_id` attribute instead.", |
| DeprecationWarning, stacklevel=2) |
| return self.args_id |
|
|
| def get(self): |
| """Read value from cache and return it.""" |
| if self.verbose: |
| msg = _format_load_msg(self.func_id, self.args_id, |
| timestamp=self.timestamp, |
| metadata=self.metadata) |
| else: |
| msg = None |
|
|
| try: |
| return self.store_backend.load_item( |
| [self.func_id, self.args_id], msg=msg, verbose=self.verbose) |
| except ValueError as exc: |
| new_exc = KeyError( |
| "Error while trying to load a MemorizedResult's value. " |
| "It seems that this folder is corrupted : {}".format( |
| os.path.join( |
| self.store_backend.location, self.func_id, |
| self.args_id) |
| )) |
| raise new_exc from exc |
|
|
| def clear(self): |
| """Clear value from cache""" |
| self.store_backend.clear_item([self.func_id, self.args_id]) |
|
|
| def __repr__(self): |
| return ('{class_name}(location="{location}", func="{func}", ' |
| 'args_id="{args_id}")' |
| .format(class_name=self.__class__.__name__, |
| location=self.store_backend.location, |
| func=self.func, |
| args_id=self.args_id |
| )) |
|
|
| def __getstate__(self): |
| state = self.__dict__.copy() |
| state['timestamp'] = None |
| return state |
|
|
|
|
| class NotMemorizedResult(object): |
| """Class representing an arbitrary value. |
| |
| This class is a replacement for MemorizedResult when there is no cache. |
| """ |
| __slots__ = ('value', 'valid') |
|
|
| def __init__(self, value): |
| self.value = value |
| self.valid = True |
|
|
| def get(self): |
| if self.valid: |
| return self.value |
| else: |
| raise KeyError("No value stored.") |
|
|
| def clear(self): |
| self.valid = False |
| self.value = None |
|
|
| def __repr__(self): |
| if self.valid: |
| return ('{class_name}({value})' |
| .format(class_name=self.__class__.__name__, |
| value=pformat(self.value))) |
| else: |
| return self.__class__.__name__ + ' with no value' |
|
|
| |
| def __getstate__(self): |
| return {"valid": self.valid, "value": self.value} |
|
|
| def __setstate__(self, state): |
| self.valid = state["valid"] |
| self.value = state["value"] |
|
|
|
|
| |
| |
| |
| class NotMemorizedFunc(object): |
| """No-op object decorating a function. |
| |
| This class replaces MemorizedFunc when there is no cache. It provides an |
| identical API but does not write anything on disk. |
| |
| Attributes |
| ---------- |
| func: callable |
| Original undecorated function. |
| """ |
| |
| def __init__(self, func): |
| self.func = func |
|
|
| def __call__(self, *args, **kwargs): |
| return self.func(*args, **kwargs) |
|
|
| def call_and_shelve(self, *args, **kwargs): |
| return NotMemorizedResult(self.func(*args, **kwargs)) |
|
|
| def __repr__(self): |
| return '{0}(func={1})'.format(self.__class__.__name__, self.func) |
|
|
| def clear(self, warn=True): |
| |
| pass |
|
|
| def call(self, *args, **kwargs): |
| return self.func(*args, **kwargs) |
|
|
| def check_call_in_cache(self, *args, **kwargs): |
| return False |
|
|
|
|
| |
| |
| |
| class MemorizedFunc(Logger): |
| """Callable object decorating a function for caching its return value |
| each time it is called. |
| |
| Methods are provided to inspect the cache or clean it. |
| |
| Attributes |
| ---------- |
| func: callable |
| The original, undecorated, function. |
| |
| location: string |
| The location of joblib cache. Depends on the store backend used. |
| |
| backend: str |
| Type of store backend for reading/writing cache files. |
| Default is 'local', in which case the location is the path to a |
| disk storage. |
| |
| ignore: list or None |
| List of variable names to ignore when choosing whether to |
| recompute. |
| |
| mmap_mode: {None, 'r+', 'r', 'w+', 'c'} |
| The memmapping mode used when loading from cache |
| numpy arrays. See numpy.load for the meaning of the different |
| values. |
| |
| compress: boolean, or integer |
| Whether to zip the stored data on disk. If an integer is |
| given, it should be between 1 and 9, and sets the amount |
| of compression. Note that compressed arrays cannot be |
| read by memmapping. |
| |
| verbose: int, optional |
| The verbosity flag, controls messages that are issued as |
| the function is evaluated. |
| |
| cache_validation_callback: callable, optional |
| Callable to check if a result in cache is valid or is to be recomputed. |
| When the function is called with arguments for which a cache exists, |
| the callback is called with the cache entry's metadata as its sole |
| argument. If it returns True, the cached result is returned, else the |
| cache for these arguments is cleared and the result is recomputed. |
| """ |
| |
| |
| |
|
|
| def __init__(self, func, location, backend='local', ignore=None, |
| mmap_mode=None, compress=False, verbose=1, timestamp=None, |
| cache_validation_callback=None): |
| Logger.__init__(self) |
| self.mmap_mode = mmap_mode |
| self.compress = compress |
| self.func = func |
| self.cache_validation_callback = cache_validation_callback |
|
|
| if ignore is None: |
| ignore = [] |
| self.ignore = ignore |
| self._verbose = verbose |
|
|
| |
| self.store_backend = _store_backend_factory(backend, location, |
| verbose=verbose, |
| backend_options=dict( |
| compress=compress, |
| mmap_mode=mmap_mode), |
| ) |
| if self.store_backend is not None: |
| |
| self.store_backend.store_cached_func_code([ |
| _build_func_identifier(self.func) |
| ]) |
|
|
| if timestamp is None: |
| timestamp = time.time() |
| self.timestamp = timestamp |
| try: |
| functools.update_wrapper(self, func) |
| except Exception: |
| " Objects like ufunc don't like that " |
| if inspect.isfunction(func): |
| doc = pydoc.TextDoc().document(func) |
| |
| doc = doc.replace('\n', '\n\n', 1) |
| |
| doc = re.sub('\x08.', '', doc) |
| else: |
| |
| doc = func.__doc__ |
| self.__doc__ = 'Memoized version of %s' % doc |
|
|
| self._func_code_info = None |
| self._func_code_id = None |
|
|
| def _is_in_cache_and_valid(self, path): |
| """Check if the function call is cached and valid for given arguments. |
| |
| - Compare the function code with the one from the cached function, |
| asserting if it has changed. |
| - Check if the function call is present in the cache. |
| - Call `cache_validation_callback` for user define cache validation. |
| |
| Returns True if the function call is in cache and can be used, and |
| returns False otherwise. |
| """ |
| |
| if not self._check_previous_func_code(stacklevel=4): |
| return False |
|
|
| |
| if not self.store_backend.contains_item(path): |
| return False |
|
|
| |
| metadata = self.store_backend.get_metadata(path) |
| if (self.cache_validation_callback is not None and |
| not self.cache_validation_callback(metadata)): |
| self.store_backend.clear_item(path) |
| return False |
|
|
| return True |
|
|
| def _cached_call(self, args, kwargs, shelving=False): |
| """Call wrapped function and cache result, or read cache if available. |
| |
| This function returns the wrapped function output and some metadata. |
| |
| Arguments: |
| ---------- |
| |
| args, kwargs: list and dict |
| input arguments for wrapped function |
| |
| shelving: bool |
| True when called via the call_and_shelve function. |
| |
| |
| Returns |
| ------- |
| output: value or tuple or None |
| Output of the wrapped function. |
| If shelving is True and the call has been already cached, |
| output is None. |
| |
| argument_hash: string |
| Hash of function arguments. |
| |
| metadata: dict |
| Some metadata about wrapped function call (see _persist_input()). |
| """ |
| func_id, args_id = self._get_output_identifiers(*args, **kwargs) |
| metadata = None |
| msg = None |
|
|
| |
| must_call = False |
|
|
| if self._verbose >= 20: |
| logging.basicConfig(level=logging.INFO) |
| _, name = get_func_name(self.func) |
| location = self.store_backend.get_cached_func_info([func_id])[ |
| 'location'] |
| _, signature = format_signature(self.func, *args, **kwargs) |
|
|
| self.info( |
| dedent( |
| f""" |
| Querying {name} with signature |
| {signature}. |
| |
| (argument hash {args_id}) |
| |
| The store location is {location}. |
| """ |
| ) |
| ) |
|
|
| |
| |
| |
| if self._is_in_cache_and_valid([func_id, args_id]): |
| try: |
| t0 = time.time() |
| if self._verbose: |
| msg = _format_load_msg(func_id, args_id, |
| timestamp=self.timestamp, |
| metadata=metadata) |
|
|
| if not shelving: |
| |
| out = self.store_backend.load_item( |
| [func_id, args_id], |
| msg=msg, |
| verbose=self._verbose) |
| else: |
| out = None |
|
|
| if self._verbose > 4: |
| t = time.time() - t0 |
| _, name = get_func_name(self.func) |
| msg = '%s cache loaded - %s' % (name, format_time(t)) |
| print(max(0, (80 - len(msg))) * '_' + msg) |
| except Exception: |
| |
| _, signature = format_signature(self.func, *args, **kwargs) |
| self.warn('Exception while loading results for ' |
| '{}\n {}'.format(signature, traceback.format_exc())) |
|
|
| must_call = True |
| else: |
| if self._verbose > 10: |
| _, name = get_func_name(self.func) |
| self.warn('Computing func {0}, argument hash {1} ' |
| 'in location {2}' |
| .format(name, args_id, |
| self.store_backend. |
| get_cached_func_info([func_id])['location'])) |
| must_call = True |
|
|
| if must_call: |
| out, metadata = self.call(*args, **kwargs) |
| if self.mmap_mode is not None: |
| |
| |
| if self._verbose: |
| msg = _format_load_msg(func_id, args_id, |
| timestamp=self.timestamp, |
| metadata=metadata) |
| out = self.store_backend.load_item([func_id, args_id], msg=msg, |
| verbose=self._verbose) |
|
|
| return (out, args_id, metadata) |
|
|
| @property |
| def func_code_info(self): |
| |
| |
| if hasattr(self.func, '__code__'): |
| if self._func_code_id is None: |
| self._func_code_id = id(self.func.__code__) |
| elif id(self.func.__code__) != self._func_code_id: |
| |
| self._func_code_info = None |
|
|
| if self._func_code_info is None: |
| |
| |
| |
| |
| |
| |
| |
| |
| self._func_code_info = get_func_code(self.func) |
| return self._func_code_info |
|
|
| def call_and_shelve(self, *args, **kwargs): |
| """Call wrapped function, cache result and return a reference. |
| |
| This method returns a reference to the cached result instead of the |
| result itself. The reference object is small and pickeable, allowing |
| to send or store it easily. Call .get() on reference object to get |
| result. |
| |
| Returns |
| ------- |
| cached_result: MemorizedResult or NotMemorizedResult |
| reference to the value returned by the wrapped function. The |
| class "NotMemorizedResult" is used when there is no cache |
| activated (e.g. location=None in Memory). |
| """ |
| _, args_id, metadata = self._cached_call(args, kwargs, shelving=True) |
| return MemorizedResult(self.store_backend, self.func, args_id, |
| metadata=metadata, verbose=self._verbose - 1, |
| timestamp=self.timestamp) |
|
|
| def __call__(self, *args, **kwargs): |
| return self._cached_call(args, kwargs)[0] |
|
|
| def __getstate__(self): |
| |
| |
| |
| _ = self.func_code_info |
|
|
| |
| |
| state = self.__dict__.copy() |
| state['timestamp'] = None |
|
|
| |
| state['_func_code_id'] = None |
|
|
| return state |
|
|
| def check_call_in_cache(self, *args, **kwargs): |
| """Check if function call is in the memory cache. |
| |
| Does not call the function or do any work besides func inspection |
| and arg hashing. |
| |
| Returns |
| ------- |
| is_call_in_cache: bool |
| Whether or not the result of the function has been cached |
| for the input arguments that have been passed. |
| """ |
| func_id, args_id = self._get_output_identifiers(*args, **kwargs) |
| return self.store_backend.contains_item((func_id, args_id)) |
|
|
| |
| |
| |
|
|
| def _get_argument_hash(self, *args, **kwargs): |
| return hashing.hash(filter_args(self.func, self.ignore, args, kwargs), |
| coerce_mmap=(self.mmap_mode is not None)) |
|
|
| def _get_output_identifiers(self, *args, **kwargs): |
| """Return the func identifier and input parameter hash of a result.""" |
| func_id = _build_func_identifier(self.func) |
| argument_hash = self._get_argument_hash(*args, **kwargs) |
| return func_id, argument_hash |
|
|
| def _hash_func(self): |
| """Hash a function to key the online cache""" |
| func_code_h = hash(getattr(self.func, '__code__', None)) |
| return id(self.func), hash(self.func), func_code_h |
|
|
| def _write_func_code(self, func_code, first_line): |
| """ Write the function code and the filename to a file. |
| """ |
| |
| |
| |
| |
| |
| func_id = _build_func_identifier(self.func) |
| func_code = u'%s %i\n%s' % (FIRST_LINE_TEXT, first_line, func_code) |
| self.store_backend.store_cached_func_code([func_id], func_code) |
|
|
| |
| is_named_callable = False |
| is_named_callable = (hasattr(self.func, '__name__') and |
| self.func.__name__ != '<lambda>') |
| if is_named_callable: |
| |
| |
| func_hash = self._hash_func() |
| try: |
| _FUNCTION_HASHES[self.func] = func_hash |
| except TypeError: |
| |
| pass |
|
|
| def _check_previous_func_code(self, stacklevel=2): |
| """ |
| stacklevel is the depth a which this function is called, to |
| issue useful warnings to the user. |
| """ |
| |
| |
| |
| |
| try: |
| if self.func in _FUNCTION_HASHES: |
| |
| |
| |
| func_hash = self._hash_func() |
| if func_hash == _FUNCTION_HASHES[self.func]: |
| return True |
| except TypeError: |
| |
| pass |
|
|
| |
| |
| |
| func_code, source_file, first_line = self.func_code_info |
| func_id = _build_func_identifier(self.func) |
|
|
| try: |
| old_func_code, old_first_line =\ |
| extract_first_line( |
| self.store_backend.get_cached_func_code([func_id])) |
| except (IOError, OSError): |
| self._write_func_code(func_code, first_line) |
| return False |
| if old_func_code == func_code: |
| return True |
|
|
| |
| |
| |
|
|
| _, func_name = get_func_name(self.func, resolv_alias=False, |
| win_characters=False) |
| if old_first_line == first_line == -1 or func_name == '<lambda>': |
| if not first_line == -1: |
| func_description = ("{0} ({1}:{2})" |
| .format(func_name, source_file, |
| first_line)) |
| else: |
| func_description = func_name |
| warnings.warn(JobLibCollisionWarning( |
| "Cannot detect name collisions for function '{0}'" |
| .format(func_description)), stacklevel=stacklevel) |
|
|
| |
| |
| |
| |
| if not old_first_line == first_line and source_file is not None: |
| possible_collision = False |
| if os.path.exists(source_file): |
| _, func_name = get_func_name(self.func, resolv_alias=False) |
| num_lines = len(func_code.split('\n')) |
| with open_py_source(source_file) as f: |
| on_disk_func_code = f.readlines()[ |
| old_first_line - 1:old_first_line - 1 + num_lines - 1] |
| on_disk_func_code = ''.join(on_disk_func_code) |
| possible_collision = (on_disk_func_code.rstrip() == |
| old_func_code.rstrip()) |
| else: |
| possible_collision = source_file.startswith('<doctest ') |
| if possible_collision: |
| warnings.warn(JobLibCollisionWarning( |
| 'Possible name collisions between functions ' |
| "'%s' (%s:%i) and '%s' (%s:%i)" % |
| (func_name, source_file, old_first_line, |
| func_name, source_file, first_line)), |
| stacklevel=stacklevel) |
|
|
| |
| |
| if self._verbose > 10: |
| _, func_name = get_func_name(self.func, resolv_alias=False) |
| self.warn("Function {0} (identified by {1}) has changed" |
| ".".format(func_name, func_id)) |
| self.clear(warn=True) |
| return False |
|
|
| def clear(self, warn=True): |
| """Empty the function's cache.""" |
| func_id = _build_func_identifier(self.func) |
|
|
| if self._verbose > 0 and warn: |
| self.warn("Clearing function cache identified by %s" % func_id) |
| self.store_backend.clear_path([func_id, ]) |
|
|
| func_code, _, first_line = self.func_code_info |
| self._write_func_code(func_code, first_line) |
|
|
| def call(self, *args, **kwargs): |
| """Force the execution of the function with the given arguments. |
| |
| The output values will be persisted, i.e., the cache will be updated |
| with any new values. |
| |
| Parameters |
| ---------- |
| *args: arguments |
| The arguments. |
| **kwargs: keyword arguments |
| Keyword arguments. |
| |
| Returns |
| ------- |
| output : object |
| The output of the function call. |
| metadata : dict |
| The metadata associated with the call. |
| """ |
| start_time = time.time() |
| func_id, args_id = self._get_output_identifiers(*args, **kwargs) |
| if self._verbose > 0: |
| print(format_call(self.func, args, kwargs)) |
| output = self.func(*args, **kwargs) |
| self.store_backend.dump_item( |
| [func_id, args_id], output, verbose=self._verbose) |
|
|
| duration = time.time() - start_time |
| metadata = self._persist_input(duration, args, kwargs) |
|
|
| if self._verbose > 0: |
| _, name = get_func_name(self.func) |
| msg = '%s - %s' % (name, format_time(duration)) |
| print(max(0, (80 - len(msg))) * '_' + msg) |
| return output, metadata |
|
|
| def _persist_input(self, duration, args, kwargs, this_duration_limit=0.5): |
| """ Save a small summary of the call using json format in the |
| output directory. |
| |
| output_dir: string |
| directory where to write metadata. |
| |
| duration: float |
| time taken by hashing input arguments, calling the wrapped |
| function and persisting its output. |
| |
| args, kwargs: list and dict |
| input arguments for wrapped function |
| |
| this_duration_limit: float |
| Max execution time for this function before issuing a warning. |
| """ |
| start_time = time.time() |
| argument_dict = filter_args(self.func, self.ignore, |
| args, kwargs) |
|
|
| input_repr = dict((k, repr(v)) for k, v in argument_dict.items()) |
| |
| |
| metadata = { |
| "duration": duration, "input_args": input_repr, "time": start_time, |
| } |
|
|
| func_id, args_id = self._get_output_identifiers(*args, **kwargs) |
| self.store_backend.store_metadata([func_id, args_id], metadata) |
|
|
| this_duration = time.time() - start_time |
| if this_duration > this_duration_limit: |
| |
| |
| |
| |
| |
| |
| warnings.warn("Persisting input arguments took %.2fs to run." |
| "If this happens often in your code, it can cause " |
| "performance problems " |
| "(results will be correct in all cases). " |
| "The reason for this is probably some large input " |
| "arguments for a wrapped function." |
| % this_duration, stacklevel=5) |
| return metadata |
|
|
| |
| |
| |
|
|
| def __repr__(self): |
| return '{class_name}(func={func}, location={location})'.format( |
| class_name=self.__class__.__name__, |
| func=self.func, |
| location=self.store_backend.location,) |
|
|
|
|
| |
| |
| |
| class Memory(Logger): |
| """ A context object for caching a function's return value each time it |
| is called with the same input arguments. |
| |
| All values are cached on the filesystem, in a deep directory |
| structure. |
| |
| Read more in the :ref:`User Guide <memory>`. |
| |
| Parameters |
| ---------- |
| location: str, pathlib.Path or None |
| The path of the base directory to use as a data store |
| or None. If None is given, no caching is done and |
| the Memory object is completely transparent. This option |
| replaces cachedir since version 0.12. |
| |
| backend: str, optional |
| Type of store backend for reading/writing cache files. |
| Default: 'local'. |
| The 'local' backend is using regular filesystem operations to |
| manipulate data (open, mv, etc) in the backend. |
| |
| mmap_mode: {None, 'r+', 'r', 'w+', 'c'}, optional |
| The memmapping mode used when loading from cache |
| numpy arrays. See numpy.load for the meaning of the |
| arguments. |
| |
| compress: boolean, or integer, optional |
| Whether to zip the stored data on disk. If an integer is |
| given, it should be between 1 and 9, and sets the amount |
| of compression. Note that compressed arrays cannot be |
| read by memmapping. |
| |
| verbose: int, optional |
| Verbosity flag, controls the debug messages that are issued |
| as functions are evaluated. |
| |
| bytes_limit: int | str, optional |
| Limit in bytes of the size of the cache. By default, the size of |
| the cache is unlimited. When reducing the size of the cache, |
| ``joblib`` keeps the most recently accessed items first. If a |
| str is passed, it is converted to a number of bytes using units |
| { K | M | G} for kilo, mega, giga. |
| |
| **Note:** You need to call :meth:`joblib.Memory.reduce_size` to |
| actually reduce the cache size to be less than ``bytes_limit``. |
| |
| **Note:** This argument has been deprecated. One should give the |
| value of ``bytes_limit`` directly in |
| :meth:`joblib.Memory.reduce_size`. |
| |
| backend_options: dict, optional |
| Contains a dictionary of named parameters used to configure |
| the store backend. |
| """ |
| |
| |
| |
|
|
| def __init__(self, location=None, backend='local', |
| mmap_mode=None, compress=False, verbose=1, bytes_limit=None, |
| backend_options=None): |
| Logger.__init__(self) |
| self._verbose = verbose |
| self.mmap_mode = mmap_mode |
| self.timestamp = time.time() |
| if bytes_limit is not None: |
| warnings.warn( |
| "bytes_limit argument has been deprecated. It will be removed " |
| "in version 1.5. Please pass its value directly to " |
| "Memory.reduce_size.", |
| category=DeprecationWarning |
| ) |
| self.bytes_limit = bytes_limit |
| self.backend = backend |
| self.compress = compress |
| if backend_options is None: |
| backend_options = {} |
| self.backend_options = backend_options |
|
|
| if compress and mmap_mode is not None: |
| warnings.warn('Compressed results cannot be memmapped', |
| stacklevel=2) |
|
|
| self.location = location |
| if isinstance(location, str): |
| location = os.path.join(location, 'joblib') |
|
|
| self.store_backend = _store_backend_factory( |
| backend, location, verbose=self._verbose, |
| backend_options=dict(compress=compress, mmap_mode=mmap_mode, |
| **backend_options)) |
|
|
| def cache(self, func=None, ignore=None, verbose=None, mmap_mode=False, |
| cache_validation_callback=None): |
| """ Decorates the given function func to only compute its return |
| value for input arguments not cached on disk. |
| |
| Parameters |
| ---------- |
| func: callable, optional |
| The function to be decorated |
| ignore: list of strings |
| A list of arguments name to ignore in the hashing |
| verbose: integer, optional |
| The verbosity mode of the function. By default that |
| of the memory object is used. |
| mmap_mode: {None, 'r+', 'r', 'w+', 'c'}, optional |
| The memmapping mode used when loading from cache |
| numpy arrays. See numpy.load for the meaning of the |
| arguments. By default that of the memory object is used. |
| cache_validation_callback: callable, optional |
| Callable to validate whether or not the cache is valid. When |
| the cached function is called with arguments for which a cache |
| exists, this callable is called with the metadata of the cached |
| result as its sole argument. If it returns True, then the |
| cached result is returned, else the cache for these arguments |
| is cleared and recomputed. |
| |
| Returns |
| ------- |
| decorated_func: MemorizedFunc object |
| The returned object is a MemorizedFunc object, that is |
| callable (behaves like a function), but offers extra |
| methods for cache lookup and management. See the |
| documentation for :class:`joblib.memory.MemorizedFunc`. |
| """ |
| if (cache_validation_callback is not None and |
| not callable(cache_validation_callback)): |
| raise ValueError( |
| "cache_validation_callback needs to be callable. " |
| f"Got {cache_validation_callback}." |
| ) |
| if func is None: |
| |
| |
| return functools.partial( |
| self.cache, ignore=ignore, |
| mmap_mode=mmap_mode, |
| verbose=verbose, |
| cache_validation_callback=cache_validation_callback |
| ) |
| if self.store_backend is None: |
| return NotMemorizedFunc(func) |
| if verbose is None: |
| verbose = self._verbose |
| if mmap_mode is False: |
| mmap_mode = self.mmap_mode |
| if isinstance(func, MemorizedFunc): |
| func = func.func |
| return MemorizedFunc( |
| func, location=self.store_backend, backend=self.backend, |
| ignore=ignore, mmap_mode=mmap_mode, compress=self.compress, |
| verbose=verbose, timestamp=self.timestamp, |
| cache_validation_callback=cache_validation_callback |
| ) |
|
|
| def clear(self, warn=True): |
| """ Erase the complete cache directory. |
| """ |
| if warn: |
| self.warn('Flushing completely the cache') |
| if self.store_backend is not None: |
| self.store_backend.clear() |
|
|
| |
| |
| |
| |
| _FUNCTION_HASHES.clear() |
|
|
| def reduce_size(self, bytes_limit=None, items_limit=None, age_limit=None): |
| """Remove cache elements to make the cache fit its limits. |
| |
| The limitation can impose that the cache size fits in ``bytes_limit``, |
| that the number of cache items is no more than ``items_limit``, and |
| that all files in cache are not older than ``age_limit``. |
| |
| Parameters |
| ---------- |
| bytes_limit: int | str, optional |
| Limit in bytes of the size of the cache. By default, the size of |
| the cache is unlimited. When reducing the size of the cache, |
| ``joblib`` keeps the most recently accessed items first. If a |
| str is passed, it is converted to a number of bytes using units |
| { K | M | G} for kilo, mega, giga. |
| |
| items_limit: int, optional |
| Number of items to limit the cache to. By default, the number of |
| items in the cache is unlimited. When reducing the size of the |
| cache, ``joblib`` keeps the most recently accessed items first. |
| |
| age_limit: datetime.timedelta, optional |
| Maximum age of items to limit the cache to. When reducing the size |
| of the cache, any items last accessed more than the given length of |
| time ago are deleted. |
| """ |
| if bytes_limit is None: |
| bytes_limit = self.bytes_limit |
|
|
| if self.store_backend is None: |
| |
| return |
|
|
| if bytes_limit is None and items_limit is None and age_limit is None: |
| |
| return |
|
|
| |
| self.store_backend.enforce_store_limits( |
| bytes_limit, items_limit, age_limit |
| ) |
|
|
| def eval(self, func, *args, **kwargs): |
| """ Eval function func with arguments `*args` and `**kwargs`, |
| in the context of the memory. |
| |
| This method works similarly to the builtin `apply`, except |
| that the function is called only if the cache is not |
| up to date. |
| |
| """ |
| if self.store_backend is None: |
| return func(*args, **kwargs) |
| return self.cache(func)(*args, **kwargs) |
|
|
| |
| |
| |
|
|
| def __repr__(self): |
| return '{class_name}(location={location})'.format( |
| class_name=self.__class__.__name__, |
| location=(None if self.store_backend is None |
| else self.store_backend.location)) |
|
|
| def __getstate__(self): |
| """ We don't store the timestamp when pickling, to avoid the hash |
| depending from it. |
| """ |
| state = self.__dict__.copy() |
| state['timestamp'] = None |
| return state |
|
|
|
|
| |
| |
| |
|
|
| def expires_after(days=0, seconds=0, microseconds=0, milliseconds=0, minutes=0, |
| hours=0, weeks=0): |
| """Helper cache_validation_callback to force recompute after a duration. |
| |
| Parameters |
| ---------- |
| days, seconds, microseconds, milliseconds, minutes, hours, weeks: numbers |
| argument passed to a timedelta. |
| """ |
| delta = timedelta( |
| days=days, seconds=seconds, microseconds=microseconds, |
| milliseconds=milliseconds, minutes=minutes, hours=hours, weeks=weeks |
| ) |
|
|
| def cache_validation_callback(metadata): |
| computation_age = time.time() - metadata['time'] |
| return computation_age < delta.total_seconds() |
|
|
| return cache_validation_callback |
|
|