| """Benchmark n_jobs=1 on high number of fast tasks |
| |
| The goal of this script is to study the overhead incurred when calling small |
| tasks with `n_jobs=1` compared to just running a simple list comprehension. |
| |
| """ |
| |
| |
|
|
| import time |
|
|
| import numpy as np |
| import pandas as pd |
|
|
| import matplotlib.pyplot as plt |
| from matplotlib.colors import LogNorm |
| from matplotlib.cm import ScalarMappable |
|
|
|
|
| from joblib import Parallel, delayed |
|
|
|
|
| |
| LINE_STYLES = {'iter': '--', 'parallel': '-', 'loop': ':'} |
| COLORS = {'none': 'indianred'} |
| CMAP = plt.colormaps['viridis'] |
|
|
| |
| |
| funcs = [("none", lambda x: None, None)] |
| n_size = 3 |
| for i, n in enumerate(np.logspace(0, 2, n_size, dtype=int)): |
| n = max(1, n) |
| label = f'mat({n:3d}, {n:3d})' |
| A = np.random.randn(n, n) |
| funcs.append((label, lambda A: A @ A, A)) |
| COLORS[label] = CMAP(i / (n_size - 1)) |
|
|
| |
| |
| results = [] |
| for f_name, func, arg in funcs: |
| print('Benchmarking:', f_name) |
| f_delayed = delayed(func) |
| for N in np.logspace(1, 4, 4, dtype=int): |
| print('# tasks:', N) |
| for _ in range(10): |
|
|
| t_start = time.perf_counter() |
| list(func(arg) for _ in range(N)) |
| runtime = time.perf_counter() - t_start |
| results.append(dict( |
| method="iter", N=N, func=f_name, runtime=runtime / N |
| )) |
|
|
| t_start = time.perf_counter() |
| Parallel(n_jobs=1)(f_delayed(arg) for _ in range(N)) |
| runtime = time.perf_counter() - t_start |
| results.append(dict( |
| method="parallel", N=N, func=f_name, runtime=runtime / N |
| )) |
|
|
| |
| df = pd.DataFrame(results) |
|
|
| |
| curve = df.groupby(["method", "N", "func"])["runtime"].median().reset_index() |
|
|
| |
| |
| for k, grp in curve.groupby("func"): |
|
|
| c_iter = grp.query('method == "iter"').set_index("N") |
| c_parallel = grp.query('method == "parallel"').set_index("N") |
| overhead_percent = (c_parallel["runtime"] / c_iter["runtime"]).median() - 1 |
| overhead_time = (c_parallel["runtime"] - c_iter["runtime"]) / c_iter.index |
| print( |
| f"For func {k}, overhead_time is {overhead_time.median()/1e-6:.2f}us, " |
| f"increasing runtime by {overhead_percent * 100:.2f}%" |
| ) |
|
|
| |
| fig, ax = plt.subplots() |
| for key, grp in curve.groupby(["method", "func"]): |
| ax.loglog( |
| grp["N"], |
| grp["runtime"], |
| label=key, |
| ls=LINE_STYLES[key[0]], |
| color=COLORS[key[1]], |
| ) |
|
|
| ax.set_xlabel("# Tasks") |
| ax.set_ylabel("Runtime per task") |
| ax.legend( |
| (plt.Line2D([], [], ls=ls, c="k") for ls in LINE_STYLES.values()), |
| LINE_STYLES, |
| bbox_to_anchor=(0.3, 1, 0.3, 0.1), |
| loc='center', |
| ncol=3, |
| ) |
| plt.colorbar( |
| ScalarMappable(norm=LogNorm(1, 200), cmap=plt.cm.viridis), |
| label="Matrix size" |
| ) |
|
|
| plt.show() |
|
|