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e4f7c80 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
from os.path import exists, sys
from setuptools import find_packages, setup
def parse_version(fpath):
"""
Statically parse the version number from a python file
"""
import ast
if not exists(fpath):
raise ValueError("fpath={!r} does not exist".format(fpath))
with open(fpath, "r") as file_:
sourcecode = file_.read()
pt = ast.parse(sourcecode)
class VersionVisitor(ast.NodeVisitor):
def visit_Assign(self, node):
for target in node.targets:
if getattr(target, "id", None) == "__version__":
self.version = node.value.s
visitor = VersionVisitor()
visitor.visit(pt)
return visitor.version
def parse_requirements(fname="requirements.txt", with_version=False):
"""
Parse the package dependencies listed in a requirements file but strips
specific versioning information.
Args:
fname (str): path to requirements file
with_version (bool, default=False): if true include version specs
Returns:
List[str]: list of requirements items
"""
import re
from os.path import exists
require_fpath = fname
def parse_line(line):
"""
Parse information from a line in a requirements text file
"""
if line.startswith("-r "):
# Allow specifying requirements in other files
target = line.split(" ")[1]
for info in parse_require_file(target):
yield info
else:
info = {"line": line}
if line.startswith("-e "):
info["package"] = line.split("#egg=")[1]
else:
# Remove versioning from the package
pat = "(" + "|".join([">=", "==", ">"]) + ")"
parts = re.split(pat, line, maxsplit=1)
parts = [p.strip() for p in parts]
info["package"] = parts[0]
if len(parts) > 1:
op, rest = parts[1:]
if ";" in rest:
# Handle platform specific dependencies
# http://setuptools.readthedocs.io/en/latest/setuptools.html#declaring-platform-specific-dependencies
version, platform_deps = map(str.strip, rest.split(";"))
info["platform_deps"] = platform_deps
else:
version = rest # NOQA
info["version"] = (op, version)
yield info
def parse_require_file(fpath):
with open(fpath, "r") as f:
for line in f.readlines():
line = line.strip()
if line and not line.startswith("#"):
for info in parse_line(line):
yield info
def gen_packages_items():
if exists(require_fpath):
for info in parse_require_file(require_fpath):
parts = [info["package"]]
if with_version and "version" in info:
parts.extend(info["version"])
if not sys.version.startswith("3.4"):
# apparently package_deps are broken in 3.4
platform_deps = info.get("platform_deps")
if platform_deps is not None:
parts.append(";" + platform_deps)
item = "".join(parts)
yield item
packages = list(gen_packages_items())
return packages
def parse_description(fpath):
"""
Parse the description in the README file
"""
# Check this exists, otherwise pip install breaks
if exists(fpath):
with open(fpath, "r") as f:
text = f.read()
return text
return ""
NAME = "pgmpy"
VERSION = parse_version("pgmpy/__init__.py") # must be global for git tags
if __name__ == "__main__":
setup(
name=NAME,
version=VERSION,
description="A library for Probabilistic Graphical Models",
packages=find_packages(exclude=["tests"]),
include_package_data=True,
package_data={"": ["utils/example_models/*.bif.gz"]},
author="Ankur Ankan",
author_email="ankurankan@gmail.com",
url="https://github.com/pgmpy/pgmpy",
license="MIT",
classifiers=[
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Intended Audience :: Education",
"Intended Audience :: Science/Research",
"Operating System :: Unix",
"Operating System :: POSIX",
"Operating System :: Microsoft :: Windows",
"Operating System :: MacOS",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
long_description=parse_description("README.md"),
long_description_content_type="text/markdown",
install_requires=parse_requirements("requirements/runtime.txt"),
extras_require={
"all": parse_requirements("requirements.txt"),
"tests": parse_requirements("requirements/tests.txt"),
},
)
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