File size: 12,264 Bytes
362a075 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 | # SPDX-FileCopyrightText: 2022-present deepset GmbH <info@deepset.ai>
#
# SPDX-License-Identifier: Apache-2.0
import os
from typing import List
import pytest
from haystack import Document, Pipeline
from haystack.components.builders import AnswerBuilder, PromptBuilder
from haystack.components.embedders import SentenceTransformersDocumentEmbedder, SentenceTransformersTextEmbedder
from haystack.components.evaluators import (
ContextRelevanceEvaluator,
DocumentMAPEvaluator,
DocumentMRREvaluator,
DocumentRecallEvaluator,
FaithfulnessEvaluator,
SASEvaluator,
)
from haystack.components.evaluators.document_recall import RecallMode
from haystack.components.generators import OpenAIGenerator
from haystack.components.retrievers import InMemoryEmbeddingRetriever
from haystack.components.writers import DocumentWriter
from haystack.document_stores.in_memory import InMemoryDocumentStore
from haystack.document_stores.types import DuplicatePolicy
from haystack.evaluation import EvaluationRunResult
EMBEDDINGS_MODEL = "sentence-transformers/all-MiniLM-L6-v2"
def indexing_pipeline(documents: List[Document]):
"""Indexing the documents"""
document_store = InMemoryDocumentStore()
doc_writer = DocumentWriter(document_store=document_store, policy=DuplicatePolicy.SKIP)
doc_embedder = SentenceTransformersDocumentEmbedder(model=EMBEDDINGS_MODEL, progress_bar=False)
ingestion_pipe = Pipeline()
ingestion_pipe.add_component(instance=doc_embedder, name="doc_embedder") # type: ignore
ingestion_pipe.add_component(instance=doc_writer, name="doc_writer") # type: ignore
ingestion_pipe.connect("doc_embedder.documents", "doc_writer.documents")
ingestion_pipe.run({"doc_embedder": {"documents": documents}})
return document_store
def rag_pipeline(document_store: InMemoryDocumentStore, top_k: int): # type: ignore
"""RAG pipeline"""
template = """
You have to answer the following question based on the given context information only.
Context:
{% for document in documents %}
{{ document.content }}
{% endfor %}
Question: {{question}}
Answer:
"""
rag = Pipeline()
rag.add_component("embedder", SentenceTransformersTextEmbedder(model=EMBEDDINGS_MODEL, progress_bar=False)) # type: ignore
rag.add_component("retriever", InMemoryEmbeddingRetriever(document_store, top_k=top_k)) # type: ignore
rag.add_component("prompt_builder", PromptBuilder(template=template)) # type: ignore
rag.add_component("generator", OpenAIGenerator(model="gpt-4o-mini")) # type: ignore
rag.add_component("answer_builder", AnswerBuilder()) # type: ignore
rag.connect("embedder", "retriever.query_embedding")
rag.connect("retriever", "prompt_builder.documents")
rag.connect("prompt_builder", "generator")
rag.connect("generator.replies", "answer_builder.replies")
rag.connect("generator.meta", "answer_builder.meta")
rag.connect("retriever", "answer_builder.documents")
return rag
def evaluation_pipeline():
"""
Create an evaluation pipeline with the following evaluators:
- DocumentMRREvaluator
- FaithfulnessEvaluator
- SASEvaluator
- DocumentMAPEvaluator
- DocumentRecallEvaluator
- ContextRelevanceEvaluator
"""
eval_pipeline = Pipeline()
eval_pipeline.add_component("doc_mrr", DocumentMRREvaluator())
eval_pipeline.add_component("groundedness", FaithfulnessEvaluator())
eval_pipeline.add_component("sas", SASEvaluator(model=EMBEDDINGS_MODEL))
eval_pipeline.add_component("doc_map", DocumentMAPEvaluator())
eval_pipeline.add_component("doc_recall_single_hit", DocumentRecallEvaluator(mode=RecallMode.SINGLE_HIT))
eval_pipeline.add_component("doc_recall_multi_hit", DocumentRecallEvaluator(mode=RecallMode.MULTI_HIT))
eval_pipeline.add_component("relevance", ContextRelevanceEvaluator())
return eval_pipeline
def built_eval_input(questions, truth_docs, truth_answers, retrieved_docs, contexts, pred_answers):
"""Helper function to build the input for the evaluation pipeline"""
return {
"doc_mrr": {"ground_truth_documents": truth_docs, "retrieved_documents": retrieved_docs},
"groundedness": {"questions": questions, "contexts": contexts, "predicted_answers": pred_answers},
"sas": {"predicted_answers": pred_answers, "ground_truth_answers": truth_answers},
"doc_map": {"ground_truth_documents": truth_docs, "retrieved_documents": retrieved_docs},
"doc_recall_single_hit": {"ground_truth_documents": truth_docs, "retrieved_documents": retrieved_docs},
"doc_recall_multi_hit": {"ground_truth_documents": truth_docs, "retrieved_documents": retrieved_docs},
"relevance": {"questions": questions, "contexts": contexts},
}
def run_rag_pipeline(documents, evaluation_questions, rag_pipeline_a):
"""
Run the RAG pipeline and return the contexts, predicted answers, retrieved documents and ground truth documents
"""
truth_docs = []
retrieved_docs = []
contexts = []
predicted_answers = []
for q in evaluation_questions:
response = rag_pipeline_a.run(
{
"embedder": {"text": q["question"]},
"prompt_builder": {"question": q["question"]},
"answer_builder": {"query": q["question"]},
}
)
truth_docs.append([doc for doc in documents if doc.meta["name"] in q["ground_truth_doc"] and doc.content])
retrieved_docs.append(response["answer_builder"]["answers"][0].documents)
contexts.append([doc.content for doc in response["answer_builder"]["answers"][0].documents])
predicted_answers.append(response["answer_builder"]["answers"][0].data)
return contexts, predicted_answers, retrieved_docs, truth_docs
def built_input_for_results_eval(rag_results):
"""Helper function to build the input for the results evaluation"""
return {
"Mean Reciprocal Rank": {
"individual_scores": rag_results["doc_mrr"]["individual_scores"],
"score": rag_results["doc_mrr"]["score"],
},
"Semantic Answer Similarity": {
"individual_scores": rag_results["sas"]["individual_scores"],
"score": rag_results["sas"]["score"],
},
"Faithfulness": {
"individual_scores": rag_results["groundedness"]["individual_scores"],
"score": rag_results["groundedness"]["score"],
},
"Document MAP": {
"individual_scores": rag_results["doc_map"]["individual_scores"],
"score": rag_results["doc_map"]["score"],
},
"Document Recall Single Hit": {
"individual_scores": rag_results["doc_recall_single_hit"]["individual_scores"],
"score": rag_results["doc_recall_single_hit"]["score"],
},
"Document Recall Multi Hit": {
"individual_scores": rag_results["doc_recall_multi_hit"]["individual_scores"],
"score": rag_results["doc_recall_multi_hit"]["score"],
},
"Contextual Relevance": {
"individual_scores": rag_results["relevance"]["individual_scores"],
"score": rag_results["relevance"]["score"],
},
}
@pytest.mark.skipif(
not os.environ.get("OPENAI_API_KEY", None),
reason="Export an env var called OPENAI_API_KEY containing the OpenAI API key to run this test.",
)
def test_evaluation_pipeline(samples_path):
"""Test an evaluation pipeline"""
eval_questions = [
{
"question": 'What falls within the term "cultural anthropology"?',
"answer": "the ideology and analytical stance of cultural relativism",
"ground_truth_doc": ["Culture.txt"],
},
{
"question": "Who was the spiritual guide during the Protestant Reformation?",
"answer": "Martin Bucer",
"ground_truth_doc": ["Strasbourg.txt"],
},
{
"question": "What is materialism?",
"answer": "a form of philosophical monism",
"ground_truth_doc": ["Materialism.txt"],
},
]
questions = [q["question"] for q in eval_questions]
truth_answers = [q["answer"] for q in eval_questions]
# indexing documents
docs = []
full_path = os.path.join(str(samples_path) + "/test_documents/")
for article in os.listdir(full_path):
with open(f"{full_path}/{article}", "r") as f:
for text in f.read().split("\n"):
if doc := Document(content=text, meta={"name": article}) if text else None:
docs.append(doc)
doc_store = indexing_pipeline(docs)
# running the RAG pipeline A + evaluation pipeline
rag_pipeline_a = rag_pipeline(doc_store, top_k=2)
contexts_a, pred_answers_a, retrieved_docs_a, truth_docs = run_rag_pipeline(docs, eval_questions, rag_pipeline_a)
eval_pipeline = evaluation_pipeline()
eval_input = built_eval_input(questions, truth_docs, truth_answers, retrieved_docs_a, contexts_a, pred_answers_a)
results_rag_a = eval_pipeline.run(eval_input)
# running the evaluation EvaluationRunResult
inputs_a = {
"question": questions,
"contexts": contexts_a,
"answer": truth_answers,
"predicted_answer": pred_answers_a,
}
results_a = built_input_for_results_eval(results_rag_a)
evaluation_result_a = EvaluationRunResult(run_name="rag_pipeline_a", results=results_a, inputs=inputs_a)
df_score_report = evaluation_result_a.score_report()
# assert the score report has all the metrics
assert len(df_score_report) == 7
assert list(df_score_report.columns) == ["metrics", "score"]
assert list(df_score_report.metrics) == [
"Mean Reciprocal Rank",
"Semantic Answer Similarity",
"Faithfulness",
"Document MAP",
"Document Recall Single Hit",
"Document Recall Multi Hit",
"Contextual Relevance",
]
# assert the evaluation result has all the metrics, inputs and questions
df = evaluation_result_a.to_pandas()
assert list(df.columns) == [
"question",
"contexts",
"answer",
"predicted_answer",
"Mean Reciprocal Rank",
"Semantic Answer Similarity",
"Faithfulness",
"Document MAP",
"Document Recall Single Hit",
"Document Recall Multi Hit",
"Contextual Relevance",
]
assert len(df) == 3
# running the RAG pipeline B
rag_pipeline_b = rag_pipeline(doc_store, top_k=4)
contexts_b, pred_answers_b, retrieved_docs_b, truth_docs = run_rag_pipeline(docs, eval_questions, rag_pipeline_b)
eval_input = built_eval_input(questions, truth_docs, truth_answers, retrieved_docs_b, contexts_b, pred_answers_b)
results_rag_b = eval_pipeline.run(eval_input)
inputs_b = {
"question": questions,
"contexts": contexts_b,
"answer": truth_answers,
"predicted_answer": pred_answers_b,
}
results_b = built_input_for_results_eval(results_rag_b)
evaluation_result_b = EvaluationRunResult(run_name="rag_pipeline_b", results=results_b, inputs=inputs_b)
df_comparative = evaluation_result_a.comparative_individual_scores_report(evaluation_result_b)
# assert the comparative score report has all the metrics, inputs and questions
assert len(df_comparative) == 3
assert list(df_comparative.columns) == [
"question",
"contexts",
"answer",
"predicted_answer",
"rag_pipeline_a_Mean Reciprocal Rank",
"rag_pipeline_a_Semantic Answer Similarity",
"rag_pipeline_a_Faithfulness",
"rag_pipeline_a_Document MAP",
"rag_pipeline_a_Document Recall Single Hit",
"rag_pipeline_a_Document Recall Multi Hit",
"rag_pipeline_a_Contextual Relevance",
"rag_pipeline_b_Mean Reciprocal Rank",
"rag_pipeline_b_Semantic Answer Similarity",
"rag_pipeline_b_Faithfulness",
"rag_pipeline_b_Document MAP",
"rag_pipeline_b_Document Recall Single Hit",
"rag_pipeline_b_Document Recall Multi Hit",
"rag_pipeline_b_Contextual Relevance",
]
|