| [tool.poetry] | |
| name = "scGPT" | |
| version = "0.2.4" | |
| description = "Large-scale generative pretrain of single cell using transformer." | |
| license = "MIT" | |
| authors = ["Haotian <subercui@gmail.com>"] | |
| repository = "https://github.com/bowang-lab/scGPT" | |
| homepage = "https://github.com/bowang-lab/scGPT" | |
| readme = "README.md" | |
| [tool.poetry.dependencies] | |
| python = ">=3.7.12,<4" | |
| pandas = ">=1.3.5" | |
| scvi-tools = ">=0.16.0,<1.0" | |
| scanpy = "^1.9.1" | |
| torch = ">=1.13.0" | |
| torchtext = "*" | |
| numba = ">=0.55.1" | |
| scikit-misc = ">=0.1.4" | |
| umap-learn = ">=0.5.3" | |
| leidenalg = ">=0.8.10" | |
| datasets = "^2.3.0" | |
| typing-extensions = "^4.2.0" | |
| scib = "^1.0.3" | |
| cell-gears = "<0.0.3" | |
| orbax = "<0.1.8" | |
| [tool.poetry.dev-dependencies] | |
| pytest = "^5.2" | |
| black = "^22.3.0" | |
| tensorflow = "^2.8.0" | |
| flash-attn = "^1.0.1" | |
| torch-geometric = "^2.3.0" | |
| dcor = "~0.5.3" | |
| wandb = "^0.12.3" | |
| plotly = "^5.3.1" | |
| [build-system] | |
| requires = ["poetry-core>=1.0.0"] | |
| build-backend = "poetry.core.masonry.api" | |