transfer/code/scGPT/poetry.lock

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requests = {version = "*", optional = true, markers = "extra == \"http\""}

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adl = ["adlfs"]
arrow = ["pyarrow (>=1)"]
dask = ["dask", "distributed"]
dropbox = ["dropbox", "dropboxdrivefs", "requests"]
entrypoints = ["importlib-metadata"]
fuse = ["fusepy"]
gcs = ["gcsfs"]
git = ["pygit2"]
github = ["requests"]
gs = ["gcsfs"]
gui = ["panel"]
hdfs = ["pyarrow (>=1)"]
http = ["aiohttp (!=4.0.0a0,!=4.0.0a1)", "requests"]
libarchive = ["libarchive-c"]
oci = ["ocifs"]
s3 = ["s3fs"]
sftp = ["paramiko"]
smb = ["smbprotocol"]
ssh = ["paramiko"]
tqdm = ["tqdm"]

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description = "Clean single-source support for Python 3 and 2"
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"

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description = "Python AST that abstracts the underlying Python version"
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
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version = "3.5.4"
description = "A version helper in the spirit of versioneer."
category = "main"
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python-versions = ">=3.7"

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importlib_metadata = {version = "*", markers = "python_version < \"3.8\""}
typing_extensions = {version = "*", markers = "python_version < \"3.8\""}

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[[package]]
name = "gitdb"
version = "4.0.9"
description = "Git Object Database"
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
smmap = ">=3.0.1,<6"

[[package]]
name = "gitpython"
version = "3.1.27"
description = "GitPython is a python library used to interact with Git repositories"
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
gitdb = ">=4.0.1,<5"
typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""}

[[package]]
name = "google-auth"
version = "1.35.0"
description = "Google Authentication Library"
category = "main"
optional = false
python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"

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pyasn1-modules = ">=0.2.1"
rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""}
setuptools = ">=40.3.0"
six = ">=1.9.0"

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pyopenssl = ["pyopenssl (>=20.0.0)"]
reauth = ["pyu2f (>=0.1.5)"]

[[package]]
name = "google-auth-oauthlib"
version = "0.4.6"
description = "Google Authentication Library"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
google-auth = ">=1.0.0"
requests-oauthlib = ">=0.7.0"

[package.extras]
tool = ["click (>=6.0.0)"]

[[package]]
name = "google-pasta"
version = "0.2.0"
description = "pasta is an AST-based Python refactoring library"
category = "dev"
optional = false
python-versions = "*"

[package.dependencies]
six = "*"

[[package]]
name = "grpcio"
version = "1.47.0"
description = "HTTP/2-based RPC framework"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
six = ">=1.5.2"

[package.extras]
protobuf = ["grpcio-tools (>=1.47.0)"]

[[package]]
name = "h5py"
version = "3.1.0"
description = "Read and write HDF5 files from Python"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
cached-property = {version = "*", markers = "python_version < \"3.8\""}
numpy = [
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    {version = ">=1.19.3", markers = "python_version >= \"3.9\""},
]

[[package]]
name = "huggingface-hub"
version = "0.8.1"
description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub"
category = "main"
optional = false
python-versions = ">=3.7.0"

[package.dependencies]
filelock = "*"
importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
packaging = ">=20.9"
pyyaml = ">=5.1"
requests = "*"
tqdm = "*"
typing-extensions = ">=3.7.4.3"

[package.extras]
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fastai = ["fastai (>=2.4)", "fastcore (>=1.3.27)", "toml"]
quality = ["black (>=22.0,<23.0)", "flake8 (>=3.8.3)", "isort (>=5.5.4)"]
tensorflow = ["graphviz", "pydot", "tensorflow"]
testing = ["datasets", "pytest", "pytest-cov", "soundfile"]
torch = ["torch"]

[[package]]
name = "idna"
version = "3.3"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "igraph"
version = "0.9.11"
description = "High performance graph data structures and algorithms"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
texttable = ">=1.6.2"

[package.extras]
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plotting = ["cairocffi (>=1.2.0)"]
test = ["networkx (>=2.5)", "numpy (>=1.19.0)", "pandas (>=1.1.0)", "pytest (>=7.0.1)", "scipy (>=1.5.0)"]
test-musl = ["networkx (>=2.5)", "pytest (>=7.0.1)"]

[[package]]
name = "importlib-metadata"
version = "4.12.0"
description = "Read metadata from Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
zipp = ">=0.5"

[package.extras]
docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"]
perf = ["ipython"]
testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]

[[package]]
name = "importlib-resources"
version = "5.8.0"
description = "Read resources from Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}

[package.extras]
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testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]

[[package]]
name = "ipykernel"
version = "6.15.0"
description = "IPython Kernel for Jupyter"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
appnope = {version = "*", markers = "platform_system == \"Darwin\""}
debugpy = ">=1.0"
ipython = ">=7.23.1"
jupyter-client = ">=6.1.12"
matplotlib-inline = ">=0.1"
nest-asyncio = "*"
packaging = "*"
psutil = "*"
pyzmq = ">=17"
tornado = ">=6.1"
traitlets = ">=5.1.0"

[package.extras]
test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=6.0)", "pytest-cov", "pytest-timeout"]

[[package]]
name = "ipython"
version = "7.34.0"
description = "IPython: Productive Interactive Computing"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
appnope = {version = "*", markers = "sys_platform == \"darwin\""}
backcall = "*"
colorama = {version = "*", markers = "sys_platform == \"win32\""}
decorator = "*"
jedi = ">=0.16"
matplotlib-inline = "*"
pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
pickleshare = "*"
prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
pygments = "*"
setuptools = ">=18.5"
traitlets = ">=4.2"

[package.extras]
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doc = ["Sphinx (>=1.3)"]
kernel = ["ipykernel"]
nbconvert = ["nbconvert"]
nbformat = ["nbformat"]
notebook = ["ipywidgets", "notebook"]
parallel = ["ipyparallel"]
qtconsole = ["qtconsole"]
test = ["ipykernel", "nbformat", "nose (>=0.10.1)", "numpy (>=1.17)", "pygments", "requests", "testpath"]

[[package]]
name = "ipython-genutils"
version = "0.2.0"
description = "Vestigial utilities from IPython"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "ipywidgets"
version = "7.7.1"
description = "IPython HTML widgets for Jupyter"
category = "main"
optional = false
python-versions = "*"

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ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""}
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widgetsnbextension = ">=3.6.0,<3.7.0"

[package.extras]
test = ["mock", "pytest (>=3.6.0)", "pytest-cov"]

[[package]]
name = "jax"
version = "0.3.13"
description = "Differentiate, compile, and transform Numpy code."
category = "main"
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python-versions = ">=3.7"

[package.dependencies]
absl-py = "*"
numpy = ">=1.19"
opt_einsum = "*"
scipy = ">=1.2.1"
typing_extensions = "*"

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cpu = ["jaxlib (==0.3.10)"]
cuda = ["jaxlib (==0.3.10+cuda11.cudnn82)"]
cuda11_cudnn805 = ["jaxlib (==0.3.10+cuda11.cudnn805)"]
cuda11_cudnn82 = ["jaxlib (==0.3.10+cuda11.cudnn82)"]
minimum-jaxlib = ["jaxlib (==0.3.7)"]
tpu = ["jaxlib (==0.3.10)", "libtpu-nightly (==0.1.dev20220504)", "requests"]

[[package]]
name = "jaxlib"
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python-versions = ">=3.7"

[package.dependencies]
absl-py = "*"
flatbuffers = ">=1.12,<3.0"
numpy = ">=1.19"
scipy = "*"

[[package]]
name = "jedi"
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description = "An autocompletion tool for Python that can be used for text editors."
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python-versions = ">=3.6"

[package.dependencies]
parso = ">=0.8.0,<0.9.0"

[package.extras]
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testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"]

[[package]]
name = "jinja2"
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python-versions = ">=3.7"

[package.dependencies]
MarkupSafe = ">=2.0"

[package.extras]
i18n = ["Babel (>=2.7)"]

[[package]]
name = "joblib"
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python-versions = ">=3.6"

[[package]]
name = "jsonschema"
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python-versions = ">=3.7"

[package.dependencies]
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importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
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typing-extensions = {version = "*", markers = "python_version < \"3.8\""}

[package.extras]
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python-versions = ">=3.7"

[package.dependencies]
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python-dateutil = ">=2.8.2"
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[package.extras]
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[[package]]
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[package.dependencies]
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[package.extras]
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[[package]]
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[[package]]
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python-versions = ">=3.6"

[[package]]
name = "keras"
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description = "Deep learning for humans."
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optional = false
python-versions = "*"

[[package]]
name = "keras-preprocessing"
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category = "dev"
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python-versions = "*"

[package.dependencies]
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six = ">=1.9.0"

[package.extras]
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pep8 = ["flake8"]
tests = ["Pillow", "keras", "pandas", "pytest", "pytest-cov", "pytest-xdist", "tensorflow"]

[[package]]
name = "kiwisolver"
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python-versions = ">=3.7"

[package.dependencies]
typing-extensions = {version = "*", markers = "python_version < \"3.8\""}

[[package]]
name = "leidenalg"
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python-versions = "*"

[package.dependencies]
igraph = ">=0.9.0,<0.10"

[[package]]
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[[package]]
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[[package]]
name = "louvain"
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[package.dependencies]
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[[package]]
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[package.dependencies]
importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}

[package.extras]
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[[package]]
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[[package]]
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[package.dependencies]
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[package.dependencies]
traitlets = "*"

[[package]]
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[[package]]
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[[package]]
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[[package]]
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[[package]]
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[[package]]
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[[package]]
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webpdf = ["pyppeteer (>=1,<1.1)"]

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