| .. scGPT documentation master file, created by | |
| sphinx-quickstart on Sun Jul 2 07:16:12 2023. | |
| You can adapt this file completely to your liking, but it should at least | |
| contain the root `toctree` directive. | |
| Welcome to scGPT's documentation! | |
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| :target: https://scgpt.readthedocs.io/en/latest/?badge=latest | |
| :alt: Documentation Status | |
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| :target: https://pypi.python.org/pypi/scgpt | |
| :alt: PyPI version | |
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| :alt: PyPI supported Python versions | |
| Welcome to the documentation for scGPT, a Python package for single-cell multi-omic data analysis using pretrained foundation models. This package is based on the work of scGPT (`GitHub <https://github.com/bowang-lab/scGPT>`_, `preprint <https://www.biorxiv.org/content/10.1101/2023.04.30.538439>`_) and provides a set of functions for data preprocessing, visualization, and model evaluation. | |
| ================================= | |
| .. toctree:: | |
| :maxdepth: 2 | |
| :caption: Getting Started: | |
| introduction | |
| installation | |
| .. toctree:: | |
| :maxdepth: 1 | |
| :caption: Tutorials: | |
| tutorial_grn | |
| tutorial_integraion | |
| tutorial_annotation | |
| tutorial_perturbation | |
| tutorial_reference_mapping | |
| .. toctree:: | |
| :maxdepth: 2 | |
| :caption: API Reference: | |
| scgpt | |
| .. toctree:: | |
| :maxdepth: 2 | |
| :caption: References: | |
| faq | |
| references | |
| Indices and tables | |
| ================== | |
| * :ref:`genindex` | |
| * :ref:`modindex` | |
| * :ref:`search` | |