transfer/code/prompt_selection/run_eval_all.sh

#!/bin/bash
# Evaluate all perturbation conditions and aggregate results.
# Run on login node (no GPU needed).

source /home/hp250092/ku50001222/qian/aivc/lfj/stack_env/bin/activate
cd /home/hp250092/ku50001222/qian/aivc/lfj/transfer

PERTURBATIONS=(
    "Belinostat"
    "CHIR-99021"
    "Crizotinib"
    "Dabrafenib"
    "Dactolisib"
    "Foretinib"
    "Idelalisib"
    "LDN 193189"
    "Linagliptin"
    "O-Demethylated Adapalene"
    "Palbociclib"
    "Penfluridol"
    "Porcn Inhibitor III"
    "R428"
)

echo "=========================================="
echo "Evaluating all perturbation conditions"
echo "Start: $(date)"
echo "=========================================="

for PERT in "${PERTURBATIONS[@]}"; do
    echo ""
    echo "--- Evaluating: $PERT ---"
    python code/prompt_selection/evaluate_results.py --perturbation "$PERT" || echo "WARNING: Evaluation failed for $PERT"
done

echo ""
echo "--- Aggregating results ---"
python code/prompt_selection/aggregate_results.py

echo "=========================================="
echo "All evaluations complete: $(date)"
echo "=========================================="