| ========================================== |
| Job ID: 5402619 |
| Job Name: ccfm_topk30_neg |
| Start: Sat Mar 14 14:34:35 JST 2026 |
| Node: b0018 |
| GPU: NVIDIA H100, 95830 MiB |
| NVIDIA H100, 95830 MiB |
| NVIDIA H100, 95830 MiB |
| NVIDIA H100, 95830 MiB |
| Run: CCFM (topk=30, use_negative_edge=True) |
| ========================================== |
| The following values were not passed to `accelerate launch` and had defaults used instead: |
| More than one GPU was found, enabling multi-GPU training. |
| If this was unintended please pass in `--num_processes=1`. |
| `--num_machines` was set to a value of `1` |
| `--mixed_precision` was set to a value of `'no'` |
| `--dynamo_backend` was set to a value of `'no'` |
| To avoid this warning pass in values for each of the problematic parameters or run `accelerate config`. |
| [W314 14:35:31.809931854 socket.cpp:764] [c10d] The client socket cannot be initialized to connect to [localhost]:29500 (errno: 97 - Address family not supported by protocol). |
| /home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/scGPT/scgpt/model/model.py:21: UserWarning: flash_attn is not installed |
| warnings.warn("flash_attn is not installed") |
| /home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/scGPT/scgpt/model/model.py:21: UserWarning: flash_attn is not installed |
| warnings.warn("flash_attn is not installed") |
| /home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/scGPT/scgpt/model/model.py:21: UserWarning: flash_attn is not installed |
| warnings.warn("flash_attn is not installed") |
| /home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/scGPT/scgpt/model/model.py:21: UserWarning: flash_attn is not installed |
| warnings.warn("flash_attn is not installed") |
| [W314 14:36:13.805735826 socket.cpp:764] [c10d] The client socket cannot be initialized to connect to [localhost]:29500 (errno: 97 - Address family not supported by protocol). |
| [W314 14:36:13.808311201 socket.cpp:764] [c10d] The client socket cannot be initialized to connect to [localhost]:29500 (errno: 97 - Address family not supported by protocol). |
| [W314 14:36:13.810035709 socket.cpp:764] [c10d] The client socket cannot be initialized to connect to [localhost]:29500 (errno: 97 - Address family not supported by protocol). |
| [W314 14:36:13.815100046 socket.cpp:764] [c10d] The client socket cannot be initialized to connect to [localhost]:29500 (errno: 97 - Address family not supported by protocol). |
| WARNING:accelerate.utils.other:[RANK 0] Detected kernel version 4.18.0, which is below the recommended minimum of 5.5.0; this can cause the process to hang. It is recommended to upgrade the kernel to the minimum version or higher. |
| CascadedFlowConfig(model_type='cascaded', batch_size=48, ntoken=512, d_model=128, nhead=8, nlayers=4, lr=5e-05, steps=200000, eta_min=1e-06, devices='1', test_only=False, data_name='norman', perturbation_function='crisper', noise_type='Gaussian', poisson_alpha=0.8, poisson_target_sum=-1, print_every=10000, mode='predict_y', result_path='./result', fusion_method='differential_perceiver', infer_top_gene=1000, n_top_genes=5000, checkpoint_path='', gamma=0.5, split_method='additive', use_mmd_loss=True, fold=1, use_negative_edge=True, topk=30, scgpt_dim=512, bottleneck_dim=128, latent_weight=1.0, choose_latent_p=0.4, target_std=1.0, dh_depth=2, warmup_batches=200, scgpt_model_dir='transfer/data/scGPT_pretrained', scgpt_max_seq_len=1200, scgpt_cache_path='', latent_steps=20, expr_steps=20) |
| [rank0]: Traceback (most recent call last): |
| [rank0]: File "/home/hp250092/ku50001222/qian/aivc/lfj/transfer/code/CCFM/scripts/run_cascaded.py", line 146, in <module> |
| [rank0]: os.makedirs(save_path, exist_ok=True) |
| [rank0]: ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ |
| [rank0]: File "<frozen os>", line 227, in makedirs |
| [rank0]: OSError: [Errno 36] File name too long: './result/ccfm-fusion_differential_perceiver-norman-cascaded-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-latent_weight_1.0-choose_latent_p_0.4-use_negative_edge_True-topk_30-scgpt_online' |
| [rank0]:[W314 14:36:18.955909336 ProcessGroupNCCL.cpp:1553] Warning: WARNING: destroy_process_group() was not called before program exit, which can leak resources. For more info, please see https: |
| W0314 14:36:24.320000 128 torch/distributed/elastic/multiprocessing/api.py:1010] Sending process 201 closing signal SIGTERM |
| W0314 14:36:24.322000 128 torch/distributed/elastic/multiprocessing/api.py:1010] Sending process 202 closing signal SIGTERM |
| W0314 14:36:24.322000 128 torch/distributed/elastic/multiprocessing/api.py:1010] Sending process 203 closing signal SIGTERM |
| E0314 14:36:24.687000 128 torch/distributed/elastic/multiprocessing/api.py:984] failed (exitcode: 1) local_rank: 0 (pid: 200) of binary: /home/hp250092/ku50001222/qian/aivc/lfj/stack_env/bin/python |
| Traceback (most recent call last): |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/bin/accelerate", line 8, in <module> |
| sys.exit(main()) |
| ~~~~^^ |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/accelerate/commands/accelerate_cli.py", line 50, in main |
| args.func(args) |
| ~~~~~~~~~^^^^^^ |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/accelerate/commands/launch.py", line 1396, in launch_command |
| multi_gpu_launcher(args) |
| ~~~~~~~~~~~~~~~~~~^^^^^^ |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/accelerate/commands/launch.py", line 1023, in multi_gpu_launcher |
| distrib_run.run(args) |
| ~~~~~~~~~~~~~~~^^^^^^ |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/torch/distributed/run.py", line 982, in run |
| elastic_launch( |
| ~~~~~~~~~~~~~~~ |
| config=config, |
| ~~~~~~~~~~~~~~ |
| entrypoint=cmd, |
| ~~~~~~~~~~~~~~~ |
| )(*cmd_args) |
| ~^^^^^^^^^^^ |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/torch/distributed/launcher/api.py", line 170, in __call__ |
| return launch_agent(self._config, self._entrypoint, list(args)) |
| File "/home/hp250092/ku50001222/qian/aivc/lfj/stack_env/lib/python3.13/site-packages/torch/distributed/launcher/api.py", line 317, in launch_agent |
| raise ChildFailedError( |
| ...<2 lines>... |
| ) |
| torch.distributed.elastic.multiprocessing.errors.ChildFailedError: |
| ============================================================ |
| scripts/run_cascaded.py FAILED |
| ------------------------------------------------------------ |
| Failures: |
| [1]: |
| time : 2026-03-14_14:36:24 |
| host : b0018 |
| rank : 1 (local_rank: 1) |
| exitcode : -15 (pid: 201) |
| error_file: <N/A> |
| traceback : Signal 15 (SIGTERM) received by PID 201 |
| [2]: |
| time : 2026-03-14_14:36:24 |
| host : b0018 |
| rank : 2 (local_rank: 2) |
| exitcode : -15 (pid: 202) |
| error_file: <N/A> |
| traceback : Signal 15 (SIGTERM) received by PID 202 |
| [3]: |
| time : 2026-03-14_14:36:24 |
| host : b0018 |
| rank : 3 (local_rank: 3) |
| exitcode : -15 (pid: 203) |
| error_file: <N/A> |
| traceback : Signal 15 (SIGTERM) received by PID 203 |
| ------------------------------------------------------------ |
| Root Cause (first observed failure): |
| [0]: |
| time : 2026-03-14_14:36:24 |
| host : b0018 |
| rank : 0 (local_rank: 0) |
| exitcode : 1 (pid: 200) |
| error_file: <N/A> |
| traceback : To enable traceback see: https: |
| ============================================================ |
| ========================================== |
| Finished: Sat Mar 14 14:36:25 JST 2026 |
| ========================================== |
|
|
