| *.7z filter=lfs diff=lfs merge=lfs -text |
| *.arrow filter=lfs diff=lfs merge=lfs -text |
| *.avro filter=lfs diff=lfs merge=lfs -text |
| *.bin filter=lfs diff=lfs merge=lfs -text |
| *.bz2 filter=lfs diff=lfs merge=lfs -text |
| *.ckpt filter=lfs diff=lfs merge=lfs -text |
| *.ftz filter=lfs diff=lfs merge=lfs -text |
| *.gz filter=lfs diff=lfs merge=lfs -text |
| *.h5 filter=lfs diff=lfs merge=lfs -text |
| *.joblib filter=lfs diff=lfs merge=lfs -text |
| *.lfs.* filter=lfs diff=lfs merge=lfs -text |
| *.lz4 filter=lfs diff=lfs merge=lfs -text |
| *.mds filter=lfs diff=lfs merge=lfs -text |
| *.mlmodel filter=lfs diff=lfs merge=lfs -text |
| *.model filter=lfs diff=lfs merge=lfs -text |
| *.msgpack filter=lfs diff=lfs merge=lfs -text |
| *.npy filter=lfs diff=lfs merge=lfs -text |
| *.npz filter=lfs diff=lfs merge=lfs -text |
| *.onnx filter=lfs diff=lfs merge=lfs -text |
| *.ot filter=lfs diff=lfs merge=lfs -text |
| *.parquet filter=lfs diff=lfs merge=lfs -text |
| *.pb filter=lfs diff=lfs merge=lfs -text |
| *.pickle filter=lfs diff=lfs merge=lfs -text |
| *.pkl filter=lfs diff=lfs merge=lfs -text |
| *.pt filter=lfs diff=lfs merge=lfs -text |
| *.pth filter=lfs diff=lfs merge=lfs -text |
| *.rar filter=lfs diff=lfs merge=lfs -text |
| *.safetensors filter=lfs diff=lfs merge=lfs -text |
| saved_model/**/* filter=lfs diff=lfs merge=lfs -text |
| *.tar.* filter=lfs diff=lfs merge=lfs -text |
| *.tar filter=lfs diff=lfs merge=lfs -text |
| *.tflite filter=lfs diff=lfs merge=lfs -text |
| *.tgz filter=lfs diff=lfs merge=lfs -text |
| *.wasm filter=lfs diff=lfs merge=lfs -text |
| *.xz filter=lfs diff=lfs merge=lfs -text |
| *.zip filter=lfs diff=lfs merge=lfs -text |
| *.zst filter=lfs diff=lfs merge=lfs -text |
| *tfevents* filter=lfs diff=lfs merge=lfs -text |
| |
| *.pcm filter=lfs diff=lfs merge=lfs -text |
| *.sam filter=lfs diff=lfs merge=lfs -text |
| *.raw filter=lfs diff=lfs merge=lfs -text |
| |
| *.aac filter=lfs diff=lfs merge=lfs -text |
| *.flac filter=lfs diff=lfs merge=lfs -text |
| *.mp3 filter=lfs diff=lfs merge=lfs -text |
| *.ogg filter=lfs diff=lfs merge=lfs -text |
| *.wav filter=lfs diff=lfs merge=lfs -text |
| |
| *.bmp filter=lfs diff=lfs merge=lfs -text |
| *.gif filter=lfs diff=lfs merge=lfs -text |
| *.png filter=lfs diff=lfs merge=lfs -text |
| *.tiff filter=lfs diff=lfs merge=lfs -text |
| |
| *.jpg filter=lfs diff=lfs merge=lfs -text |
| *.jpeg filter=lfs diff=lfs merge=lfs -text |
| *.webp filter=lfs diff=lfs merge=lfs -text |
| |
| *.mp4 filter=lfs diff=lfs merge=lfs -text |
| *.webm filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/logs/ccfm_1gpu_online_5404417.out filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/logs/ccfm_v2_5404735.out filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/logs/ccfm_v2_resume_5406605.out filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-fusion_differential_perceiver-norman-cascaded-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-latent_weight_1.0-choose_latent_p_0.4/iteration_110000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-fusion_differential_perceiver-norman-cascaded-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-latent_weight_1.0-choose_latent_p_0.4/iteration_110000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online/iteration_190000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online/iteration_190000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result_joint_generate/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-online/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/result_joint_generate/ccfm-norman-f1-topk30-negTrue-d128-lr5e-05-lw1.0-lp0.4-online/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/test_result/ccfm-fusion_differential_perceiver-norman-cascaded-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-latent_weight_1.0-choose_latent_p_0.4/iteration_0/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/CCFM/test_result/ccfm-fusion_differential_perceiver-norman-cascaded-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-latent_weight_1.0-choose_latent_p_0.4/iteration_0/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/ori_scDFM/data/norman.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/ori_scDFM/logs/ccfm_baseline_5404238.out filter=lfs diff=lfs merge=lfs -text |
| transfer/code/scDFM/data/norman/go.csv filter=lfs diff=lfs merge=lfs -text |
| transfer/code/scDFM/data/norman/perturb_processed.h5ad filter=lfs diff=lfs merge=lfs -text |
| transfer/code/scDFM/data/norman.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/baseline_5418102.out filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/baseline_d128_5527533.out filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/iteration_200000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/iteration_200000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30-gene_noise_scale/iteration_215000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30-gene_noise_scale/iteration_215000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/baseline/flow-fusion_differential_perceiver-norman-origin-predict_y-gamma_0.5-perturbation_function_crisper-lr_5e-05-dim_model_128-infer_top_gene_1000-split_method_additive-use_mmd_loss_True-fold_1-use_negative_edge_True-topk_30-gene_noise_scale/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A1_baseline/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A1_baseline/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A1_baseline/iteration_195000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A1_baseline/iteration_195000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A1_baseline/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A5_full_asb_sde/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A6_dsm_aniso/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A6_dsm_aniso/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A6_dsm_aniso/iteration_195000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A6_dsm_aniso/iteration_195000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/A6_dsm_aniso/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA1_source_anchored_ode/iteration_195000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA1_source_anchored_ode/iteration_195000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA1_source_anchored_ode/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA6_source_anchored_sde/iteration_195000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA6_source_anchored_sde/iteration_195000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/SB/SA6_source_anchored_sde/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/att_only/fall_att_only/iteration_0/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/att_only/fall_att_only/iteration_0/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/att_svd/svd_baseline/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/att_svd/svd_baseline/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dense4/dense4-norman-f1-topk30-negTrue-d128-ld4-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dense4/dense4-norman-f1-topk30-negTrue-d128-ld4-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/iteration_195000/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/iteration_195000/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dense4_35k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dense4_35k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dim1_ablation_145k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dim1_ablation_145k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dim1_ablation_155k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/dim1_ablation_155k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_15k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_15k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_bs48_30k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_bs48_30k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_bs48_75k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_bs48_75k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_dtk100_30k/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/evl/scalar_dtk100_30k/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/loss_curve.csv filter=lfs diff=lfs merge=lfs -text |
| GRN/result/scalar/scalar-norman-f1-topk30-negTrue-d128-ld1-lr5e-05-lw1.0-lp0.4-agg_signed_l2-dtk100-ema0.9999-ln-wu2000-rk4/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/scalar/scalar-norman-f1-topk30-negTrue-d128-ld1-lr5e-05-lw1.0-lp0.4-agg_signed_l2-dtk100-ema0.9999-ln-wu2000-rk4/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/scalar/scalar_bs48/eval_only/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/scalar/scalar_bs48/eval_only/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/topk30_emb/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-cached_sparse-sparse_tk30_L11/iteration_0/pred.h5ad filter=lfs diff=lfs merge=lfs -text |
| GRN/result/topk30_emb/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-cached_sparse-sparse_tk30_L11/iteration_0/real.h5ad filter=lfs diff=lfs merge=lfs -text |
| Report/GRN_CCFM_group_meeting.pptx filter=lfs diff=lfs merge=lfs -text |
| Report/Nano/Nanomotor_Presentation.pptx filter=lfs diff=lfs merge=lfs -text |
| Report/Nano/glucose-fueled-gated-nanomotors-enhancing-in-vivo-anticancer-efficacy-via-deep-drug-penetration-into-tumors.pdf filter=lfs diff=lfs merge=lfs -text |
| Report/PPT/GRN_CCFM_presentation.pdf filter=lfs diff=lfs merge=lfs -text |
| Report/PPT/GRN_CCFM_presentation.pptx filter=lfs diff=lfs merge=lfs -text |
| Report/PPT2/GRN_CCFM_presentation.pdf filter=lfs diff=lfs merge=lfs -text |
| Report/PPT2/GRN_CCFM_presentation.pptx filter=lfs diff=lfs merge=lfs -text |
| Report/week10/GRN_Progress_Report.pdf filter=lfs diff=lfs merge=lfs -text |
| Report/week10/GRN_Progress_Report.pptx filter=lfs diff=lfs merge=lfs -text |
| data/Causal[[:space:]]Schrödinger[[:space:]]Bridges.pdf filter=lfs diff=lfs merge=lfs -text |
| data/bridge.pdf filter=lfs diff=lfs merge=lfs -text |
| local_bin/soffice filter=lfs diff=lfs merge=lfs -text |
| poster/poster/scprompt_poster.pptx filter=lfs diff=lfs merge=lfs -text |
|
|