diff --git a/002/surgery_description.txt b/002/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/002/surgery_report.txt b/002/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/003/InvasionFront_CD3_block7_x2_y2_patient003_1.json b/003/InvasionFront_CD3_block7_x2_y2_patient003_1.json new file mode 100644 index 0000000000000000000000000000000000000000..6a1f4c38137cfd0d944b13c535ff1c223900bad9 --- /dev/null +++ b/003/InvasionFront_CD3_block7_x2_y2_patient003_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6896.3, + "Centroid Y µm": 4722.5, + "Num Detections": 22507, + "Num Negative": 20222, + "Num Positive": 2285, + "Positive %": 10.15, + "Num Positive per mm^2": 905.4 + } +} \ No newline at end of file diff --git a/003/InvasionFront_CD8_block7_x1_y2_patient003_0.json 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"Positive %": 4.043, + "Num Positive per mm^2": 336.23 + } +} \ No newline at end of file diff --git a/003/TumorCenter_CD3_block7_x1_y2_patient003_0.json b/003/TumorCenter_CD3_block7_x1_y2_patient003_0.json new file mode 100644 index 0000000000000000000000000000000000000000..8edb8c6f602ddc416c4d4e4d67a06463988bd38e --- /dev/null +++ b/003/TumorCenter_CD3_block7_x1_y2_patient003_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4097.8, + "Centroid Y µm": 4997.4, + "Num Detections": 21529, + "Num Negative": 13127, + "Num Positive": 8402, + "Positive %": 39.03, + "Num Positive per mm^2": 3522.4 + } +} \ No newline at end of file diff --git a/003/TumorCenter_CD3_block7_x2_y2_patient003_1.json b/003/TumorCenter_CD3_block7_x2_y2_patient003_1.json new file mode 100644 index 0000000000000000000000000000000000000000..ef3dce425020e83fec2b6453fafcfd1671d0dfc7 --- /dev/null +++ b/003/TumorCenter_CD3_block7_x2_y2_patient003_1.json @@ -0,0 +1,11 @@ +{ + 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file mode 100644 index 0000000000000000000000000000000000000000..3cd1833473faeb649dbbb6e8ad061269a03c863c --- /dev/null +++ b/003/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2019, + "age_at_initial_diagnosis": 60, + "sex": "male", + "smoking_status": "non-smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 20, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + "adjuvant_radiotherapy_modality": "percutaneous radiotherapy", + "adjuvant_systemic_therapy": "yes", + "adjuvant_systemic_therapy_modality": "fluorouracil + cisplatin", + "adjuvant_radiochemotherapy": "yes" +} \ No newline at end of file diff --git a/003/patient_pathological_data.json b/003/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..c27d20e72db5df241c774d82f8999ed316e07dde --- /dev/null +++ b/003/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "003", + "primary_tumor_site": "Oropharynx", + "pT_stage": "pT1", + "pN_stage": "pN1", + "grading": "hpv_association_p16", + "hpv_association_p16": "positive", + "number_of_positive_lymph_nodes": 1.0, + "number_of_resected_lymph_nodes": 15, + "perinodal_invasion": "no", + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.5", + "histologic_type": "SCC_Basaloid", + "infiltration_depth_in_mm": 7.0 +} \ No newline at end of file diff --git a/003/surgery_description.txt b/003/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/003/surgery_report.txt b/003/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/004/InvasionFront_CD3_block14_x5_y9_patient004_0.json b/004/InvasionFront_CD3_block14_x5_y9_patient004_0.json new file mode 100644 index 0000000000000000000000000000000000000000..5d8b36cd43ec30e098003f3bcde72722ed296abf --- /dev/null +++ b/004/InvasionFront_CD3_block14_x5_y9_patient004_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16716.1, + "Centroid Y µm": 26585.9, + "Num Detections": 22291, + "Num Negative": 20419, + "Num Positive": 1872, + "Positive %": 8.398, + "Num Positive per mm^2": 771.88 + } +} \ No newline at end of file diff --git a/004/InvasionFront_CD3_block14_x6_y9_patient004_1.json b/004/InvasionFront_CD3_block14_x6_y9_patient004_1.json new file mode 100644 index 0000000000000000000000000000000000000000..9155c909bdc640d28bff33ba407d5f7b4b8d1edd --- /dev/null +++ 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mm^2": 473.0 + } +} \ No newline at end of file diff --git a/005/InvasionFront_CD3_block11_x2_y1_patient005_1.json b/005/InvasionFront_CD3_block11_x2_y1_patient005_1.json new file mode 100644 index 0000000000000000000000000000000000000000..92f06dbe42616809c6dcd1b4101f0da150ab5270 --- /dev/null +++ b/005/InvasionFront_CD3_block11_x2_y1_patient005_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5747.0, + "Centroid Y µm": 2573.6, + "Num Detections": 19623, + "Num Negative": 18450, + "Num Positive": 1173, + "Positive %": 5.978, + "Num Positive per mm^2": 531.39 + } +} \ No newline at end of file diff --git a/005/InvasionFront_CD8_block11_x1_y1_patient005_0.json b/005/InvasionFront_CD8_block11_x1_y1_patient005_0.json new file mode 100644 index 0000000000000000000000000000000000000000..e4f3dc2a2288fd01b0f4691c27fbe943f0c5295c --- /dev/null +++ b/005/InvasionFront_CD8_block11_x1_y1_patient005_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid 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0000000000000000000000000000000000000000..bc25c663226692d66afde10395905e030d5938b0 --- /dev/null +++ b/005/TumorCenter_CD3_block11_x1_y1_patient005_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7257.1, + "Centroid Y µm": 2597.5, + "Num Detections": 17408, + "Num Negative": 17015, + "Num Positive": 393, + "Positive %": 2.258, + "Num Positive per mm^2": 199.71 + } +} \ No newline at end of file diff --git a/005/TumorCenter_CD3_block11_x2_y1_patient005_1.json b/005/TumorCenter_CD3_block11_x2_y1_patient005_1.json new file mode 100644 index 0000000000000000000000000000000000000000..3388f1e93c1523efe2d8ce99cecf0fe77451d926 --- /dev/null +++ b/005/TumorCenter_CD3_block11_x2_y1_patient005_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 9718.3, + "Centroid Y µm": 2339.8, + "Num Detections": 16708, + "Num Negative": 16548, + "Num Positive": 160, + "Positive %": 0.9576, + "Num Positive per mm^2": 78.33 + } +} \ No newline at end of file diff --git a/005/TumorCenter_CD8_block11_x1_y1_patient005_0.json b/005/TumorCenter_CD8_block11_x1_y1_patient005_0.json new file mode 100644 index 0000000000000000000000000000000000000000..709d9992afc23a5a9d7cfe1f6252cd3e555ecc2a --- /dev/null +++ b/005/TumorCenter_CD8_block11_x1_y1_patient005_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5247.2, + "Centroid Y µm": 2148.9, + "Num Detections": 19662, + "Num Negative": 19537, + "Num Positive": 125, + "Positive %": 0.6357, + "Num Positive per mm^2": 56.47 + } +} \ No newline at end of file diff --git a/005/TumorCenter_CD8_block11_x2_y1_patient005_1.json b/005/TumorCenter_CD8_block11_x2_y1_patient005_1.json new file mode 100644 index 0000000000000000000000000000000000000000..ac5b78e74300d594f88bd7b56c3ac62f1c0bf19c --- /dev/null +++ b/005/TumorCenter_CD8_block11_x2_y1_patient005_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7496.0, + "Centroid Y µm": 2373.7, + "Num 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at end of file diff --git a/006/InvasionFront_CD8_block6_x1_y8_patient006_0.json b/006/InvasionFront_CD8_block6_x1_y8_patient006_0.json new file mode 100644 index 0000000000000000000000000000000000000000..2720f97454a6d584b2a58f163b98ab45683a1885 --- /dev/null +++ b/006/InvasionFront_CD8_block6_x1_y8_patient006_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4347.7, + "Centroid Y µm": 19614.6, + "Num Detections": 24693, + "Num Negative": 24514, + "Num Positive": 179, + "Positive %": 0.7249, + "Num Positive per mm^2": 71.94 + } +} \ No newline at end of file diff --git a/006/InvasionFront_CD8_block6_x2_y8_patient006_1.json b/006/InvasionFront_CD8_block6_x2_y8_patient006_1.json new file mode 100644 index 0000000000000000000000000000000000000000..ee8e13d7ff2fcfe98d336a827c28a2d5c5a1775f --- /dev/null +++ b/006/InvasionFront_CD8_block6_x2_y8_patient006_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 7096.2, + "Centroid Y µm": 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0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/006/surgery_report.txt b/006/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/007/InvasionFront_CD3_block13_x5_y2_patient007_0.json b/007/InvasionFront_CD3_block13_x5_y2_patient007_0.json new file mode 100644 index 0000000000000000000000000000000000000000..255b54cc5c771ab4b4cc3daca38bb4d584eb701d --- /dev/null +++ b/007/InvasionFront_CD3_block13_x5_y2_patient007_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 15766.7, + "Centroid Y µm": 4422.7, + "Num Detections": 3660, + "Num Negative": 3534, + "Num Positive": 126, + "Positive %": 3.443, + "Num Positive per mm^2": 276.3 + } +} \ No newline at end of file diff --git a/007/InvasionFront_CD3_block13_x6_y2_patient007_1.json b/007/InvasionFront_CD3_block13_x6_y2_patient007_1.json new file mode 100644 index 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end of file diff --git a/007/InvasionFront_CD8_block13_x6_y2_patient007_1.json b/007/InvasionFront_CD8_block13_x6_y2_patient007_1.json new file mode 100644 index 0000000000000000000000000000000000000000..8dfdac1fa4c42254bfabb8b06119d18535124706 --- /dev/null +++ b/007/InvasionFront_CD8_block13_x6_y2_patient007_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 20089.4, + "Centroid Y µm": 6371.6, + "Num Detections": 17766, + "Num Negative": 14678, + "Num Positive": 3088, + "Positive %": 17.38, + "Num Positive per mm^2": 1532.4 + } +} \ No newline at end of file diff --git a/007/TumorCenter_CD3_block13_x5_y2_patient007_0.json b/007/TumorCenter_CD3_block13_x5_y2_patient007_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c6468d85d304b5990c97fbec4729acaca2900056 --- /dev/null +++ b/007/TumorCenter_CD3_block13_x5_y2_patient007_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 17690.6, + "Centroid Y µm": 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"Positive %": 17.62, + "Num Positive per mm^2": 1537.9 + } +} \ No newline at end of file diff --git a/008/TumorCenter_CD8_block6_x5_y4_patient008_0.json b/008/TumorCenter_CD8_block6_x5_y4_patient008_0.json new file mode 100644 index 0000000000000000000000000000000000000000..99741f26bce820d86d0c8e43b8c458a917ac0443 --- /dev/null +++ b/008/TumorCenter_CD8_block6_x5_y4_patient008_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16366.3, + "Centroid Y µm": 10544.4, + "Num Detections": 24500, + "Num Negative": 24444, + "Num Positive": 56, + "Positive %": 0.2286, + "Num Positive per mm^2": 20.94 + } +} \ No newline at end of file diff --git a/008/TumorCenter_CD8_block6_x6_y4_patient008_1.json b/008/TumorCenter_CD8_block6_x6_y4_patient008_1.json new file mode 100644 index 0000000000000000000000000000000000000000..c86f7dc06f9c851a4e3cc1deb75c49124a30c935 --- /dev/null +++ b/008/TumorCenter_CD8_block6_x6_y4_patient008_1.json @@ -0,0 +1,11 @@ +{ + 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} +} \ No newline at end of file diff --git a/009/InvasionFront_CD8_block19_x3_y4_patient009_0.json b/009/InvasionFront_CD8_block19_x3_y4_patient009_0.json new file mode 100644 index 0000000000000000000000000000000000000000..37564dd359671ca226dc031360ac74a266027f4f --- /dev/null +++ b/009/InvasionFront_CD8_block19_x3_y4_patient009_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 11918.7, + "Centroid Y µm": 19839.5, + "Num Detections": 10849, + "Num Negative": 10782, + "Num Positive": 67, + "Positive %": 0.6176, + "Num Positive per mm^2": 60.01 + } +} \ No newline at end of file diff --git a/009/InvasionFront_CD8_block19_x4_y4_patient009_1.json b/009/InvasionFront_CD8_block19_x4_y4_patient009_1.json new file mode 100644 index 0000000000000000000000000000000000000000..48675c4cfbb7532536dc46022912a67e0ce15790 --- /dev/null +++ b/009/InvasionFront_CD8_block19_x4_y4_patient009_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14467.3, 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--- /dev/null +++ b/009/TumorCenter_CD3_block19_x4_y4_patient009_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13792.7, + "Centroid Y µm": 10869.2, + "Num Detections": 18340, + "Num Negative": 18141, + "Num Positive": 199, + "Positive %": 1.085, + "Num Positive per mm^2": 83.32 + } +} \ No newline at end of file diff --git a/009/TumorCenter_CD8_block19_x3_y4_patient009_0.json b/009/TumorCenter_CD8_block19_x3_y4_patient009_0.json new file mode 100644 index 0000000000000000000000000000000000000000..7bee1d1821b0f24673b7b305251c01ec1892558a --- /dev/null +++ b/009/TumorCenter_CD8_block19_x3_y4_patient009_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13692.7, + "Centroid Y µm": 21126.3, + "Num Detections": 20061, + "Num Negative": 19791, + "Num Positive": 270, + "Positive %": 1.346, + "Num Positive per mm^2": 113.76 + } +} \ No newline at end of file diff --git a/009/TumorCenter_CD8_block19_x4_y4_patient009_1.json 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diff --git a/009/patient_clinical_data.json b/009/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..6ae7cf6e3ec3eaa934254a6a6c4ba381f512fa75 --- /dev/null +++ b/009/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2016, + "age_at_initial_diagnosis": 76, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 21, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + "adjuvant_radiotherapy_modality": null, + "adjuvant_systemic_therapy": "no", + "adjuvant_systemic_therapy_modality": null, + "adjuvant_radiochemotherapy": "no" +} \ No newline at end of file diff --git a/009/patient_pathological_data.json b/009/patient_pathological_data.json new file mode 100644 index 0000000000000000000000000000000000000000..6458021bf2589470d39be850dbe094e69ff0890b --- /dev/null +++ b/009/patient_pathological_data.json @@ -0,0 +1,20 @@ +{ + "patient_id": "009", + "primary_tumor_site": "Larynx", + "pT_stage": "pT2", + "pN_stage": "pN0", + "grading": "G2", + "hpv_association_p16": "not_tested", + "number_of_positive_lymph_nodes": 0.0, + "number_of_resected_lymph_nodes": 1, + "perinodal_invasion": null, + "lymphovascular_invasion_L": "no", + "vascular_invasion_V": "no", + "perineural_invasion_Pn": "no", + "resection_status": "R0", + "resection_status_carcinoma_in_situ": "CIS Absent", + "carcinoma_in_situ": "no", + "closest_resection_margin_in_cm": "0.1", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 2.0 +} \ No newline at end of file diff --git a/009/surgery_description.txt b/009/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/009/surgery_report.txt b/009/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/010/InvasionFront_CD3_block18_x1_y10_patient010_0.json b/010/InvasionFront_CD3_block18_x1_y10_patient010_0.json new file mode 100644 index 0000000000000000000000000000000000000000..c66560afa8007ef5f6fc59009270842bd220e3ec --- /dev/null +++ b/010/InvasionFront_CD3_block18_x1_y10_patient010_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3373.2, + "Centroid Y µm": 29384.4, + "Num Detections": 18414, + "Num Negative": 15837, + "Num Positive": 2577, + "Positive %": 13.99, + "Num Positive per mm^2": 1185.7 + } +} \ No newline at end of file diff --git a/010/InvasionFront_CD3_block18_x2_y10_patient010_1.json b/010/InvasionFront_CD3_block18_x2_y10_patient010_1.json new file mode 100644 index 0000000000000000000000000000000000000000..08aa11b07f5bfea938197907bfad1943462e74f6 --- /dev/null +++ b/010/InvasionFront_CD3_block18_x2_y10_patient010_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6071.8, + "Centroid Y µm": 29509.4, + "Num Detections": 18040, + "Num Negative": 16846, + "Num Positive": 1194, + "Positive %": 6.619, + "Num Positive per mm^2": 576.77 + } +} \ No newline at end of file diff --git a/010/InvasionFront_CD8_block18_x1_y10_patient010_0.json b/010/InvasionFront_CD8_block18_x1_y10_patient010_0.json new file mode 100644 index 0000000000000000000000000000000000000000..8bcb9a9e0fbc5d915ac4c0a979cddedf0c73328a --- /dev/null +++ b/010/InvasionFront_CD8_block18_x1_y10_patient010_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 4122.8, + "Centroid Y µm": 32207.9, + "Num Detections": 17664, + "Num Negative": 16717, + "Num Positive": 947, + "Positive %": 5.361, + "Num Positive per mm^2": 402.21 + } +} \ No newline at end of file diff --git a/010/InvasionFront_CD8_block18_x2_y10_patient010_1.json b/010/InvasionFront_CD8_block18_x2_y10_patient010_1.json new file mode 100644 index 0000000000000000000000000000000000000000..6a271e230feb517d7797819a2cbb906f83771dc4 --- /dev/null +++ b/010/InvasionFront_CD8_block18_x2_y10_patient010_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6696.5, + "Centroid Y µm": 32282.9, + "Num Detections": 17716, + "Num Negative": 17573, + "Num Positive": 143, + "Positive %": 0.8072, + "Num Positive per mm^2": 68.17 + } +} \ No newline at end of file diff --git a/010/TumorCenter_CD3_block18_x1_y10_patient010_0.json b/010/TumorCenter_CD3_block18_x1_y10_patient010_0.json new file mode 100644 index 0000000000000000000000000000000000000000..aab22a36c886a9f4d7e065db21094c635630f6c1 --- /dev/null +++ b/010/TumorCenter_CD3_block18_x1_y10_patient010_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3323.2, + "Centroid Y µm": 24037.3, + "Num Detections": 16738, + "Num Negative": 15883, + "Num Positive": 855, + "Positive %": 5.108, + "Num Positive per mm^2": 409.46 + } +} \ No newline at end of file diff --git a/010/TumorCenter_CD3_block18_x2_y10_patient010_1.json b/010/TumorCenter_CD3_block18_x2_y10_patient010_1.json new file mode 100644 index 0000000000000000000000000000000000000000..937c29523d6590a3946de88f0ec874c5776c701f --- /dev/null +++ b/010/TumorCenter_CD3_block18_x2_y10_patient010_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5846.9, + "Centroid Y µm": 24162.2, + "Num Detections": 18166, + "Num Negative": 17625, + "Num Positive": 541, + "Positive %": 2.978, + "Num Positive per mm^2": 247.68 + } +} \ No newline at end of file diff --git a/010/TumorCenter_CD8_block18_x1_y10_patient010_0.json b/010/TumorCenter_CD8_block18_x1_y10_patient010_0.json new file mode 100644 index 0000000000000000000000000000000000000000..a261efa717ce284ea85455e0d267c86287030905 --- /dev/null +++ b/010/TumorCenter_CD8_block18_x1_y10_patient010_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3323.2, + "Centroid Y µm": 24961.8, + "Num Detections": 18481, + "Num Negative": 17153, + "Num Positive": 1328, + "Positive %": 7.186, + "Num Positive per mm^2": 573.55 + } +} \ No newline at end of file diff --git a/010/TumorCenter_CD8_block18_x2_y10_patient010_1.json b/010/TumorCenter_CD8_block18_x2_y10_patient010_1.json new file mode 100644 index 0000000000000000000000000000000000000000..c8166d8aa2652efd4767529f4ef6efc60a8d65a1 --- /dev/null +++ b/010/TumorCenter_CD8_block18_x2_y10_patient010_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5821.9, + "Centroid Y µm": 25061.7, + "Num Detections": 20410, + "Num Negative": 20172, + "Num Positive": 238, + "Positive %": 1.166, + "Num Positive per mm^2": 103.16 + } +} \ No newline at end of file diff --git a/010/history_text.txt b/010/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/010/icd_codes.txt b/010/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/010/ops_codes.txt b/010/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/010/patient_clinical_data.json b/010/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..8ab7974b52d203263082389f5b622e8d1fc9c138 --- /dev/null +++ b/010/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2017, + "age_at_initial_diagnosis": 55, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 32, + "adjuvant_treatment_intent": null, + "adjuvant_radiotherapy": "no", + 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"histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 1.5 +} \ No newline at end of file diff --git a/010/surgery_description.txt b/010/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/010/surgery_report.txt b/010/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/011/InvasionFront_CD3_block4_x3_y3_patient011_2.json b/011/InvasionFront_CD3_block4_x3_y3_patient011_2.json new file mode 100644 index 0000000000000000000000000000000000000000..fd281fa65b2b79d90ab68a82052178aec368e042 --- /dev/null +++ b/011/InvasionFront_CD3_block4_x3_y3_patient011_2.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 13980.6, + "Centroid Y µm": 13755.3, + "Num Detections": 8857, + "Num Negative": 8772, + "Num Positive": 85, + "Positive %": 0.9597, + "Num Positive per 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--git a/011/InvasionFront_CD8_block4_x5_y2_patient011_0.json b/011/InvasionFront_CD8_block4_x5_y2_patient011_0.json new file mode 100644 index 0000000000000000000000000000000000000000..b193fec3f08556680a0a2f42c0a33a935c2f1478 --- /dev/null +++ b/011/InvasionFront_CD8_block4_x5_y2_patient011_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 16466.3, + "Centroid Y µm": 10032.2, + "Num Detections": 12971, + "Num Negative": 12339, + "Num Positive": 632, + "Positive %": 4.872, + "Num Positive per mm^2": 422.48 + } +} \ No newline at end of file diff --git a/011/InvasionFront_CD8_block4_x6_y2_patient011_1.json b/011/InvasionFront_CD8_block4_x6_y2_patient011_1.json new file mode 100644 index 0000000000000000000000000000000000000000..d041f14c0ab5ece83185f90ad796bd0e665f7b47 --- /dev/null +++ b/011/InvasionFront_CD8_block4_x6_y2_patient011_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 19089.9, + "Centroid Y µm": 9932.2, + "Num 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%": 1.649, + "Num Positive per mm^2": 122.81 + } +} \ No newline at end of file diff --git a/011/TumorCenter_CD8_block4_x4_y3_patient011_3.json b/011/TumorCenter_CD8_block4_x4_y3_patient011_3.json new file mode 100644 index 0000000000000000000000000000000000000000..c74132da6a6b0f61325133f0b9f0c1d2c1dc9797 --- /dev/null +++ b/011/TumorCenter_CD8_block4_x4_y3_patient011_3.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 14467.3, + "Centroid Y µm": 7496.0, + "Num Detections": 14249, + "Num Negative": 12729, + "Num Positive": 1520, + "Positive %": 10.67, + "Num Positive per mm^2": 819.97 + } +} \ No newline at end of file diff --git a/011/TumorCenter_CD8_block4_x5_y2_patient011_0.json b/011/TumorCenter_CD8_block4_x5_y2_patient011_0.json new file mode 100644 index 0000000000000000000000000000000000000000..794758e79c567374ebfc5a3583d62c6a65183e04 --- /dev/null +++ b/011/TumorCenter_CD8_block4_x5_y2_patient011_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": 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b/011/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/011/ops_codes.txt b/011/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/011/patient_clinical_data.json b/011/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..9602e608bb139716a36d4df55bec6c623c116c20 --- /dev/null +++ b/011/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2016, + "age_at_initial_diagnosis": 55, + "sex": "male", + "smoking_status": "smoker", + "primarily_metastasis": "no", + "survival_status": "living", + "survival_status_with_cause": "living", + "first_treatment_intent": "curative", + "first_treatment_modality": "local surgery", + "days_to_first_treatment": 17, + "adjuvant_treatment_intent": "curative", + "adjuvant_radiotherapy": "yes", + 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"closest_resection_margin_in_cm": "<0.1", + "histologic_type": "SCC_Conventional-Keratinizing", + "infiltration_depth_in_mm": 10.0 +} \ No newline at end of file diff --git a/011/surgery_description.txt b/011/surgery_description.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/011/surgery_report.txt b/011/surgery_report.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/012/InvasionFront_CD3_block21_x1_y2_patient012_0.json b/012/InvasionFront_CD3_block21_x1_y2_patient012_0.json new file mode 100644 index 0000000000000000000000000000000000000000..64c48d119574905b8eb73ea03c874338cb6acc7b --- /dev/null +++ b/012/InvasionFront_CD3_block21_x1_y2_patient012_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6772.2, + "Centroid Y µm": 15072.8, + "Num Detections": 19765, + "Num Negative": 18144, + "Num Positive": 1621, + "Positive %": 8.201, + "Num Positive per mm^2": 778.34 + } +} \ No newline at end of file diff --git a/012/InvasionFront_CD3_block21_x2_y2_patient012_1.json b/012/InvasionFront_CD3_block21_x2_y2_patient012_1.json new file mode 100644 index 0000000000000000000000000000000000000000..cb81b794bd6a43851fa9bfb32e98a9c1406d211f --- /dev/null +++ b/012/InvasionFront_CD3_block21_x2_y2_patient012_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 9378.8, + "Centroid Y µm": 15274.9, + "Num Detections": 19313, + "Num Negative": 18036, + "Num Positive": 1277, + "Positive %": 6.612, + "Num Positive per mm^2": 594.87 + } +} \ No newline at end of file diff --git a/012/InvasionFront_CD8_block21_x1_y2_patient012_0.json b/012/InvasionFront_CD8_block21_x1_y2_patient012_0.json new file mode 100644 index 0000000000000000000000000000000000000000..410f083356e7aa65631681449061e663595b4934 --- /dev/null +++ b/012/InvasionFront_CD8_block21_x1_y2_patient012_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 3554.4, + "Centroid Y µm": 4970.3, + "Num Detections": 25750, + "Num Negative": 25499, + "Num Positive": 251, + "Positive %": 0.9748, + "Num Positive per mm^2": 97.85 + } +} \ No newline at end of file diff --git a/012/InvasionFront_CD8_block21_x2_y2_patient012_1.json b/012/InvasionFront_CD8_block21_x2_y2_patient012_1.json new file mode 100644 index 0000000000000000000000000000000000000000..8604ca95ed3be91e7fa8451a7f744d4693d270f8 --- /dev/null +++ b/012/InvasionFront_CD8_block21_x2_y2_patient012_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6036.4, + "Centroid Y µm": 5043.9, + "Num Detections": 22307, + "Num Negative": 22060, + "Num Positive": 247, + "Positive %": 1.107, + "Num Positive per mm^2": 99.44 + } +} \ No newline at end of file diff --git a/012/TumorCenter_CD3_block21_x1_y2_patient012_0.json b/012/TumorCenter_CD3_block21_x1_y2_patient012_0.json new file mode 100644 index 0000000000000000000000000000000000000000..d1bdea4f8988bd8081b3866f3c2ae2f20e6e6b55 --- /dev/null +++ b/012/TumorCenter_CD3_block21_x1_y2_patient012_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 2779.5, + "Centroid Y µm": 7371.7, + "Num Detections": 11556, + "Num Negative": 10831, + "Num Positive": 725, + "Positive %": 6.274, + "Num Positive per mm^2": 503.54 + } +} \ No newline at end of file diff --git a/012/TumorCenter_CD3_block21_x2_y2_patient012_1.json b/012/TumorCenter_CD3_block21_x2_y2_patient012_1.json new file mode 100644 index 0000000000000000000000000000000000000000..0dca9f87acbf20521a0429f0b42db2b2e1f72b6f --- /dev/null +++ b/012/TumorCenter_CD3_block21_x2_y2_patient012_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 5411.3, + "Centroid Y µm": 7447.6, + "Num Detections": 0, + "Num Negative": 0, + "Num Positive": 0, + "Positive %": NaN, + "Num Positive per mm^2": NaN + } +} \ No newline at end of file diff --git a/012/TumorCenter_CD8_block21_x1_y2_patient012_0.json b/012/TumorCenter_CD8_block21_x1_y2_patient012_0.json new file mode 100644 index 0000000000000000000000000000000000000000..3663262bf279deec461fdd6b6944ad863c9d597b --- /dev/null +++ b/012/TumorCenter_CD8_block21_x1_y2_patient012_0.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 6271.7, + "Centroid Y µm": 19514.7, + "Num Detections": 12545, + "Num Negative": 11932, + "Num Positive": 613, + "Positive %": 4.886, + "Num Positive per mm^2": 440.2 + } +} \ No newline at end of file diff --git a/012/TumorCenter_CD8_block21_x2_y2_patient012_1.json b/012/TumorCenter_CD8_block21_x2_y2_patient012_1.json new file mode 100644 index 0000000000000000000000000000000000000000..f793af5702d0899380b667221eb89bc5d2937947 --- /dev/null +++ b/012/TumorCenter_CD8_block21_x2_y2_patient012_1.json @@ -0,0 +1,11 @@ +{ + "patient_tma_measurements": { + "Centroid X µm": 8926.2, + "Centroid Y µm": 20875.5, + "Num Detections": 14615, + "Num Negative": 14613, + "Num Positive": 2, + "Positive %": 0.0137, + "Num Positive per mm^2": 1.442 + } +} \ No newline at end of file diff --git a/012/history_text.txt b/012/history_text.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/012/icd_codes.txt b/012/icd_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/012/ops_codes.txt b/012/ops_codes.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/012/patient_clinical_data.json b/012/patient_clinical_data.json new file mode 100644 index 0000000000000000000000000000000000000000..483bb4e4a4ecb6aef91d767c1fc64291384ea60b --- /dev/null +++ b/012/patient_clinical_data.json @@ -0,0 +1,18 @@ +{ + "year_of_initial_diagnosis": 2013, + "age_at_initial_diagnosis": 52, + "sex": "male", + "smoking_status": "smoker", 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