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Datasets:
electricsheepafrica
/
africa-synth-cancer-pathology-histology-services-all

Tasks:
Tabular Classification
Modalities:
Tabular
Text
Formats:
csv
Languages:
English
Size:
10K - 100K
Tags:
laboratory
pathology
histology
cancer-diagnosis
Synthetic
sub-saharan-africa
Libraries:
Datasets
pandas
Polars
License:
Dataset card Data Studio Files
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Auto-converted to Parquet Duplicate
id
int64
age
int64
sex
string
facility_level
string
specimen_type
string
body_site
string
clinical_indication
string
histology_processed
int64
specimen_adequate
int64
specimen_referred
int64
fixation_adequate
int64
pathologist_reviewed
int64
cytology_done
int64
ihc_done
int64
frozen_section_done
int64
telepathology_used
int64
special_stains_done
int64
diagnosis_category
string
cancer_type
string
tat_days
int64
tat_within_target
int64
second_opinion_needed
int64
report_standardized
int64
staging_included
int64
margin_status_reported
int64
year
int64
1
52
female
health_centre
cytology_fnac
cervix
other
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
2
48
female
regional
biopsy
lymph_node
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
3
45
female
tertiary
excision
cervix
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
4
57
male
tertiary
excision
breast
infectious
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
5
51
male
regional
cytology_fnac
cervix
cancer_suspected
1
0
0
0
0
0
0
0
0
0
not_reported
na
28
0
0
0
0
0
2,020
6
70
female
district
cytology_pap
lung
infectious
0
1
0
0
0
1
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
7
45
female
regional
biopsy
prostate
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
8
54
male
tertiary
biopsy
liver
inflammatory
1
1
0
1
0
0
0
0
0
0
not_reported
na
39
0
0
0
0
0
2,021
9
46
male
tertiary
biopsy
other
other
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
10
33
male
tertiary
autopsy
gi_tract
cancer_suspected
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
11
40
female
district
cytology_pap
thyroid
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
12
30
male
health_centre
cytology_pap
prostate
inflammatory
1
0
0
1
0
0
0
0
0
0
not_reported
na
241
0
0
0
0
0
2,023
13
33
female
regional
excision
gi_tract
screening
1
0
0
0
1
0
0
0
0
1
inflammatory
na
40
0
0
0
0
1
2,023
14
30
male
district
excision
bone_soft_tissue
benign_lesion
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
15
38
male
tertiary
excision
other
staging
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
16
51
female
regional
biopsy
lung
cancer_suspected
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
17
42
female
health_centre
biopsy
prostate
benign_lesion
0
1
1
0
0
0
0
0
1
0
benign
na
0
0
0
0
0
0
2,020
18
57
male
district
cytology_fnac
lymph_node
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
19
40
male
district
cytology_fnac
other
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
20
51
female
district
other
bone_soft_tissue
inflammatory
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
21
15
female
district
bone_marrow
lymph_node
screening
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
22
79
male
district
fluid_cytology
cervix
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
23
59
male
regional
biopsy
cervix
cancer_suspected
1
1
0
1
0
0
0
0
0
0
not_reported
na
46
0
0
0
0
0
2,021
24
48
female
health_centre
biopsy
breast
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
25
51
male
health_centre
biopsy
other
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
26
48
female
tertiary
cytology_pap
gi_tract
staging
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
27
52
male
regional
excision
prostate
screening
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
28
65
female
health_centre
cytology_fnac
bone_soft_tissue
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
29
49
female
tertiary
surgical_resection
cervix
other
1
0
0
0
0
0
0
0
0
0
not_reported
na
22
0
0
0
0
0
2,020
30
29
male
district
biopsy
lymph_node
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
31
17
female
tertiary
biopsy
cervix
infectious
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
32
51
male
regional
excision
breast
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
33
35
female
district
excision
other
benign_lesion
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
34
72
female
tertiary
excision
bone_soft_tissue
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
35
26
female
health_centre
biopsy
bone_soft_tissue
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
36
55
male
tertiary
surgical_resection
breast
other
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
37
25
female
tertiary
surgical_resection
other
benign_lesion
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
38
68
female
health_centre
biopsy
liver
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
39
32
male
health_centre
cytology_fnac
breast
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
40
53
female
regional
cytology_pap
liver
infectious
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
41
49
male
regional
excision
lymph_node
infectious
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
42
41
male
district
biopsy
lymph_node
inflammatory
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
43
63
female
district
excision
gi_tract
benign_lesion
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
44
54
female
district
biopsy
cervix
staging
1
1
0
1
0
0
0
0
0
0
not_reported
na
13
1
0
0
0
0
2,019
45
18
female
regional
biopsy
lymph_node
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
46
54
female
regional
cytology_fnac
cervix
cancer_suspected
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
47
34
female
tertiary
excision
skin
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
48
41
male
regional
biopsy
gi_tract
inflammatory
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
49
45
female
district
biopsy
skin
inflammatory
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
50
46
female
district
fluid_cytology
prostate
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
51
36
male
tertiary
biopsy
other
screening
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
52
50
female
district
excision
lung
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
53
77
female
district
cytology_fnac
other
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
54
41
female
health_centre
excision
other
screening
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
55
59
male
regional
biopsy
cervix
infectious
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
56
51
male
district
fluid_cytology
cervix
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
57
32
female
regional
fluid_cytology
prostate
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
58
55
female
health_centre
other
prostate
screening
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
59
50
female
district
biopsy
skin
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
60
43
female
district
cytology_pap
prostate
staging
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
61
52
male
regional
excision
breast
staging
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
62
57
female
district
fluid_cytology
other
benign_lesion
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
63
52
female
tertiary
other
cervix
cancer_suspected
1
1
0
1
0
0
0
0
0
0
not_reported
na
36
0
0
0
0
0
2,019
64
47
male
district
biopsy
prostate
screening
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
65
44
female
regional
excision
lung
staging
1
1
0
1
0
0
0
0
0
0
not_reported
na
100
0
0
0
0
0
2,021
66
59
male
district
surgical_resection
breast
cancer_suspected
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
67
14
male
district
cytology_pap
bone_soft_tissue
cancer_suspected
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
68
43
female
district
other
skin
benign_lesion
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
69
59
male
tertiary
excision
cervix
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
70
68
male
tertiary
cytology_fnac
breast
inflammatory
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
71
51
female
district
cytology_pap
prostate
cancer_suspected
0
1
0
0
0
0
0
0
1
0
inflammatory
na
0
0
0
0
0
0
2,020
72
63
male
district
cytology_pap
skin
infectious
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
73
44
female
district
excision
cervix
staging
0
0
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
74
69
female
health_centre
biopsy
gi_tract
benign_lesion
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
75
53
female
tertiary
autopsy
other
benign_lesion
1
1
0
0
1
0
0
0
0
0
infectious
na
39
0
0
0
0
0
2,022
76
60
male
district
other
gi_tract
cancer_suspected
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
77
18
female
regional
biopsy
lung
staging
1
1
0
1
0
0
0
0
0
0
not_reported
na
40
0
0
0
0
0
2,019
78
32
female
district
cytology_pap
cervix
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
79
30
male
tertiary
excision
lymph_node
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
80
43
female
district
surgical_resection
prostate
screening
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
81
44
male
regional
fluid_cytology
breast
screening
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
82
33
female
regional
biopsy
breast
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
83
54
female
tertiary
biopsy
other
inflammatory
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
84
62
male
health_centre
excision
lymph_node
inflammatory
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
85
1
female
tertiary
other
prostate
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
86
72
female
regional
cytology_fnac
cervix
other
0
1
0
0
0
1
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
87
51
female
regional
surgical_resection
gi_tract
infectious
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
88
53
male
regional
autopsy
lung
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
89
67
male
district
surgical_resection
gi_tract
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
90
53
female
district
cytology_fnac
cervix
screening
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,020
91
43
male
regional
cytology_fnac
other
cancer_suspected
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
92
63
female
regional
cytology_fnac
cervix
screening
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
93
62
female
district
excision
breast
other
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
94
49
female
district
biopsy
thyroid
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,023
95
64
male
tertiary
excision
bone_soft_tissue
staging
1
0
0
1
0
0
0
0
0
0
not_reported
na
24
0
0
0
0
0
2,020
96
67
female
health_centre
other
cervix
cancer_suspected
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
97
24
male
regional
cytology_pap
gi_tract
infectious
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
98
62
male
district
excision
cervix
infectious
0
0
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,021
99
60
female
health_centre
cytology_pap
other
cancer_suspected
0
1
1
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,019
100
48
female
district
biopsy
thyroid
staging
0
1
0
0
0
0
0
0
0
0
not_reported
na
0
0
0
0
0
0
2,022
End of preview. Expand in Data Studio

⚠️ Synthetic dataset — Parameterized from published SSA literature, not real observations. Not suitable for empirical analysis or policy inference.

Pathology & Histology Services

Abstract

Synthetic dataset modeling pathology and histology services across three SSA scenarios. Captures histology processing, pathologist availability, IHC, telepathology, specimen types, cancer diagnosis, turnaround times, and quality indicators. Parameterized from SSA pathology research.

Parameterization Evidence

Parameter Value Source Year
SSA pathologists <1 per 1M pop Nelson et al. Lancet 2016
Histopathology TAT 2-12 weeks Nelson et al. 2016
Total SSA pathologists <500 for 900M+ Adesina et al. Lancet Oncol 2013
IHC availability <10% facilities Adesina et al. 2013

Validation

Validation Report

Usage 

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/pathology-histology-services", name="limited_pathology")
df = ds['train'].to_pandas()

References

  1. Nelson AM et al. (2016). Pathology in Africa. Lancet. DOI: 10.1016/S0140-6736(16)00337-X
  2. Adesina A et al. (2013). Pathology improvement SSA. Lancet Oncol. DOI: 10.1016/S1470-2045(12)70598-3
  3. Sayed S et al. (2018). Telepathology SSA. J Clin Pathol. DOI: 10.1136/jclinpath-2017-204767

License

CC-BY-4.0
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